Csa4G000850 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G000850
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 196606 .. 196943 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATGTGAAAGCCAATGAAAACCATATACTAGAAAGAGAGATCAGATTCACATATGGAGATGAAAAACAAGGTTGCTTTGGTGGCCATGGTGGTTGTGATGGTGGTTATGACTCGATCAGCCACTGTCACCGCTGCCATGGATGAGGGGATTGAACTCCCAACCAACGGTGAAGCAAGTTATTATGATACGCCACCGCCTCCTCGTGTTTGTCCTATTATGATATTACCATGCAAAACTGATTCTGAGTGTTCTCCATGCTATTGTAACAATGGCTCCTGCATTTGACAAACAAAATGAGAAGGGAAAAAGAACCAGAAGAATGAAGTTTGTAATTTG

mRNA sequence

ATGGAGATGAAAAACAAGGTTGCTTTGGTGGCCATGGTGGTTGTGATGGTGGTTATGACTCGATCAGCCACTGTCACCGCTGCCATGGATGAGGGGATTGAACTCCCAACCAACGGTGAAGCAAGTTATTATGATACGCCACCGCCTCCTCGTGTTTGTCCTATTATGATATTACCATGCAAAACTGATTCTGAGTGTTCTCCATGCTATTGTAACAATGGCTCCTGCATTTGA

Coding sequence (CDS)

ATGGAGATGAAAAACAAGGTTGCTTTGGTGGCCATGGTGGTTGTGATGGTGGTTATGACTCGATCAGCCACTGTCACCGCTGCCATGGATGAGGGGATTGAACTCCCAACCAACGGTGAAGCAAGTTATTATGATACGCCACCGCCTCCTCGTGTTTGTCCTATTATGATATTACCATGCAAAACTGATTCTGAGTGTTCTCCATGCTATTGTAACAATGGCTCCTGCATTTGA

Protein sequence

MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPCKTDSECSPCYCNNGSCI*
Homology
[Close]
BLAST of Csa4G000850 vs. TrEMBL
Match: A0A0A0KY39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 6.9e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCNNGSCI 78
          KTDSECSPCYCNNGSCI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]
BLAST of Csa4G000850 vs. TrEMBL
Match: A0A0A0KWE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 1 

Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVM +S T   A DE IEL + GE +        RVCP  +LPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL-SGGENT-------ARVCPATLLPC 60

Query: 61 KTDSECSPCYCN--NGSCI 78
          +TDSECSPC CN  +G+C+
Sbjct: 61 ETDSECSPCICNVKSGACV 70

[Close]
BLAST of Csa4G000850 vs. NCBI nr
Match: gi|700197608|gb|KGN52766.1| (hypothetical protein Csa_4G000850 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 9.9e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCNNGSCI 78
          KTDSECSPCYCNNGSCI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]
BLAST of Csa4G000850 vs. NCBI nr
Match: gi|700197609|gb|KGN52767.1| (hypothetical protein Csa_4G000860 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 1 

Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVM +S T   A DE IEL + GE +        RVCP  +LPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL-SGGENT-------ARVCPATLLPC 60

Query: 61 KTDSECSPCYCN--NGSCI 78
          +TDSECSPC CN  +G+C+
Sbjct: 61 ETDSECSPCICNVKSGACV 70

The following BLAST results are available for this feature:
BLAST of Csa4G000850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY39_CUCSA6.9e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000850 PE=4 SV=1[more]
A0A0A0KWE9_CUCSA1.3e-1258.23Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000860 PE=4 SV=1[more]
BLAST of Csa4G000850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197608|gb|KGN52766.1|9.9e-38100.00hypothetical protein Csa_4G000850 [Cucumis sativus][more]
gi|700197609|gb|KGN52767.1|1.9e-1258.23hypothetical protein Csa_4G000860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU114084cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G000850.1Csa4G000850.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU114084CU114084transcribed_cluster