Cp4.1LG14g04620 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g04620
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 1551999 .. 1553552 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAACAAGAAGGTTGCTTTGGTGGTTATGGTGGTTCTGGCGGCGGTTATGGCTCAATCCGCCGCAGTGGATGAGGCGATTCAGCTGCCGTCAGAGGGCGGAGCAGGTTGTTACGACACACCGCCGCCGCCTCCGAGAGTATGTCCGGTTATGATATTGCCGTGTAAAACTGACTCTGAGTGCTCTCCATGTTACTGTGTTAATGGCTCCTGCGTTTGATAAGCAAAAACAAAAGGAAGAAGGAAAAGATTGTCATTAAGCACTGGTTGTGTTGTTTGTTCTTTTCCTTTTTTTTTCTATGTTCTATGCACAATAAAAAAAACTTCCCTTTTCATCCCTTTTTGTCTTGCAAAATTAATCTCGGTGTTCATGTGATTACGTGAGATTCTACATCAGTTAGAGAAGAGAACAAATTATTTTTTTTATAAAAGTATGGAAATATCTCATTGGTATGCGCGTTTTGTAATTGTGGAGCTGACTACAAGCTAAAACAGACAATAACAGCTAGCTACAGATTCAATGACCCATCTCACTAGTATACGCGTTTTGTAACTGTGGAGCTCACTACAAGCTAAAACAGACAATAACAGCTAGCTACAGATTCAATGACCCATCTCACTAGTATACGCGTTTTGTAACTGTGGAGCTCACTACAAGCTAAAACAGACAATAACAGCTAGCTACAGATTCAATGACCCGAATAATTTGAATTACCTAATCCAAACAATAAGTGTTGTGTTTGGTTGGGTTTTTTTCGGTTTGAATTTGGATGACTTTTTTGAAAATAAAAAAAAATTTGGTACCGTTTGGTTCACCGGGTTGAACCTATTTGATCTAGTCAACTTGACCATCTAGAAAATAGGATTTACAACTCAATCAAACTCAACCTACAGTATTTTTTAAATTGATATGAATATATTTGACATTTGTAATAGAGGTTAGTGATGTACTGTGACTTGAAAATATATGATATTAGAGTCTTCCGAGATTTTAGTTATTAACGTGACATGTATTATGAATAATATGGTTTTTTGAAATAATTAAAAAAAATGAACAATTGGACGATACAACCCGACTAAAAAATAAAGGGTTGAGTTAGATTAGGTTATAAATCCTACTCGAGTCATTCGTGTCACTGACCTACAAGTCTACGTGGGTTTGTGACGAATAAGTTAAAAGTGGCCAATAAAGTCGCGAAATTGATAAGGGTGAGGACGGAATTAGAGACTTTTTGTTATGTTGAAAGCATGAATATTCATCAATGGCTGCTGGTCTGTGCTATAAATACAAGGCTTGGGAGAGGGAAATAGAGATAGAGATCATATGGAGATGAAAAACAAGGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCAATCCGCAGCCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGATTCCAATACACCCAGGGTGTGCCCTGCTACGATTCTGCCATGCAAAACTGACTCTGAGTGCTCTCCATGCAACTGTGTCAATGGCTCCTGCGTTTGA

mRNA sequence

ATGGAGATGAACAAGAAGGTTGCTTTGGTGGTTATGGTGGTTCTGGCGGCGGTTATGGCTCAATCCGCCGCAGTGGATGAGGCGATTCAGCTGCCGTCAGAGGGCGGAGCAGGCTTGGGAGAGGGAAATAGAGATAGAGATCATATGGAGATGAAAAACAAGGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCAATCCGCAGCCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGATTCCAATACACCCAGGGTGTGCCCTGCTACGATTCTGCCATGCAAAACTGACTCTGAGTGCTCTCCATGCAACTGTGTCAATGGCTCCTGCGTTTGA

Coding sequence (CDS)

ATGGAGATGAACAAGAAGGTTGCTTTGGTGGTTATGGTGGTTCTGGCGGCGGTTATGGCTCAATCCGCCGCAGTGGATGAGGCGATTCAGCTGCCGTCAGAGGGCGGAGCAGGCTTGGGAGAGGGAAATAGAGATAGAGATCATATGGAGATGAAAAACAAGGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCAATCCGCAGCCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGATTCCAATACACCCAGGGTGTGCCCTGCTACGATTCTGCCATGCAAAACTGACTCTGAGTGCTCTCCATGCAACTGTGTCAATGGCTCCTGCGTTTGA

Protein sequence

MEMNKKVALVVMVVLAAVMAQSAAVDEAIQLPSEGGAGLGEGNRDRDHMEMKNKVGLVAMVVVMVVMAQSAATIAAVDEPIQVPTNGGGSDSNTPRVCPATILPCKTDSECSPCNCVNGSCV
Homology
[Close]
BLAST of Cp4.1LG14g04620 vs. TrEMBL
Match: A0A0A0KY39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-18
Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 1 

Query: 49  MEMKNKVGLVAMVVVMVVMAQSAATIAAVDEPIQVPTNGGGSDSNT---PRVCPATILPC 108
           MEMKNKV LVAMVVVMVVM +SA   AA+DE I++PTNG  S  +T   PRVCP  ILPC
Sbjct: 1   MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 109 KTDSECSPCNCVNGSCV 123
           KTDSECSPC C NGSC+
Sbjct: 61  KTDSECSPCYCNNGSCI 77

[Close]
BLAST of Cp4.1LG14g04620 vs. TrEMBL
Match: A0A0A0KWE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.2e-13
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 49  MEMKNKVGLVAMVVVMVVMAQSAATIAAVDEPIQVPTNGGGSDSNTPRVCPATILPCKTD 108
           MEMKNK  LVAMVV MVVMAQS  TI A DE I++  +GG    NT RVCPAT+LPC+TD
Sbjct: 1   MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGG---ENTARVCPATLLPCETD 60

Query: 109 SECSPCNC--VNGSCV 123
           SECSPC C   +G+CV
Sbjct: 61  SECSPCICNVKSGACV 70

[Close]
BLAST of Cp4.1LG14g04620 vs. NCBI nr
Match: gi|700197608|gb|KGN52766.1| (hypothetical protein Csa_4G000850 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 4.7e-18
Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 1 

Query: 49  MEMKNKVGLVAMVVVMVVMAQSAATIAAVDEPIQVPTNGGGSDSNT---PRVCPATILPC 108
           MEMKNKV LVAMVVVMVVM +SA   AA+DE I++PTNG  S  +T   PRVCP  ILPC
Sbjct: 1   MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 109 KTDSECSPCNCVNGSCV 123
           KTDSECSPC C NGSC+
Sbjct: 61  KTDSECSPCYCNNGSCI 77

[Close]
BLAST of Cp4.1LG14g04620 vs. NCBI nr
Match: gi|700197609|gb|KGN52767.1| (hypothetical protein Csa_4G000860 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 49  MEMKNKVGLVAMVVVMVVMAQSAATIAAVDEPIQVPTNGGGSDSNTPRVCPATILPCKTD 108
           MEMKNK  LVAMVV MVVMAQS  TI A DE I++  +GG    NT RVCPAT+LPC+TD
Sbjct: 1   MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGG---ENTARVCPATLLPCETD 60

Query: 109 SECSPCNC--VNGSCV 123
           SECSPC C   +G+CV
Sbjct: 61  SECSPCICNVKSGACV 70

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g04620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g04620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY39_CUCSA3.3e-1870.13Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000850 PE=4 SV=1[more]
A0A0A0KWE9_CUCSA9.2e-1365.79Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000860 PE=4 SV=1[more]
BLAST of Cp4.1LG14g04620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g04620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197608|gb|KGN52766.1|4.7e-1870.13hypothetical protein Csa_4G000850 [Cucumis sativus][more]
gi|700197609|gb|KGN52767.1|1.3e-1265.79hypothetical protein Csa_4G000860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g04620.1Cp4.1LG14g04620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g04620CmaCh16G003230Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g04620CmoCh16G003410Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g04620Cla006423Watermelon (97103) v1cpewmB204
Cp4.1LG14g04620Csa4G000850Cucumber (Chinese Long) v2cpecuB219
Cp4.1LG14g04620MELO3C017999Melon (DHL92) v3.5.1cpemeB201
Cp4.1LG14g04620ClCG10G010450Watermelon (Charleston Gray)cpewcgB190
Cp4.1LG14g04620CSPI04G00390Wild cucumber (PI 183967)cpecpiB221
Cp4.1LG14g04620MELO3C017999.2Melon (DHL92) v3.6.1cpemedB243
Cp4.1LG14g04620CsaV3_4G000340Cucumber (Chinese Long) v3cpecucB0263
Cp4.1LG14g04620Bhi11G000951Wax gourdcpewgoB0266
Cp4.1LG14g04620CsGy4G000350Cucumber (Gy14) v2cgybcpeB485
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g04620Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG14g04620Cucumber (Gy14) v1cgycpeB0188
Cp4.1LG14g04620Cucumber (Gy14) v1cgycpeB0215
Cp4.1LG14g04620Cucurbita maxima (Rimu)cmacpeB114
Cp4.1LG14g04620Cucurbita maxima (Rimu)cmacpeB715
Cp4.1LG14g04620Cucurbita moschata (Rifu)cmocpeB092
Cp4.1LG14g04620Cucurbita moschata (Rifu)cmocpeB668
Cp4.1LG14g04620Cucumber (Chinese Long) v2cpecuB229
Cp4.1LG14g04620Bottle gourd (USVL1VR-Ls)cpelsiB168
Cp4.1LG14g04620Melon (DHL92) v3.5.1cpemeB200
Cp4.1LG14g04620Melon (DHL92) v3.5.1cpemeB182
Cp4.1LG14g04620Melon (DHL92) v3.5.1cpemeB208
Cp4.1LG14g04620Cucumber (Gy14) v2cgybcpeB492
Cp4.1LG14g04620Cucumber (Gy14) v2cgybcpeB747
Cp4.1LG14g04620Melon (DHL92) v3.6.1cpemedB220
Cp4.1LG14g04620Melon (DHL92) v3.6.1cpemedB242
Cp4.1LG14g04620Melon (DHL92) v3.6.1cpemedB250
Cp4.1LG14g04620Silver-seed gourdcarcpeB0407
Cp4.1LG14g04620Silver-seed gourdcarcpeB0523
Cp4.1LG14g04620Cucumber (Chinese Long) v3cpecucB0245
Cp4.1LG14g04620Cucumber (Chinese Long) v3cpecucB0269
Cp4.1LG14g04620Cucumber (Chinese Long) v3cpecucB0283
Cp4.1LG14g04620Wax gourdcpewgoB0304