CmaCh16G003230 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G003230
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 1517298 .. 1518680 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAACAAGAAGGTTGCTTTGCTGGTTATGGTGGTTCTGGCGGCCGTTATGGCTCAATCCGCCGCAGTGGATGAGGCGATTCAGCTGCCGTCAGAGGGCGGAGCAGGTTGTTACGACACACCGCCGCCTCCGAGAGTATGTCCGGTTATGATATTGCCATGTAAAACTGACTCTGAGTGCTCTCCATGTTACTGTATTAATGGCTCCTGCGTTTGATAAGCAAAAACAAAAGGAAGAAGGAAAAGATTCTCATTAAGCACCGTTGTGTTTGTTCTTTTCCTTTTTTTCTATGTTCTATGCACAATAAAAAACTTCCCTTTTCATCACTTTTTGTCTTGCAAAATTAATCTCTCTCTACTTTTTCGGTGTTCATGTGATTACGTGAGATTTTACATCGATTAGAGAAGAGAACGAAATACTTTTTTTTATACGGGTGTGAAACATCTCACTAGTGTACGCGTTTTATAATTGTGGAGCTGACTACAAGCTAAAACCGACAATAACAGCTAGCTACAGATTCAATGACTCGAATAATTTGAATGACCTAATCCAAACAATAAGTGTTGTGTTGGGTTGAGTTTTTTTTGATTTGGATCGGGATGAATTTTTTGAAAATCGAAAAATTTGGTACGGTTTGGTTCACGGGTTTGAACCTATTTGATCAGTCAACTTGACCATCTAGAAAATAGGATTTACAACTCAATCAAACTCAACTCTACAATATTTTTTAAATTGTTATGAATATTAAGAATATTTAACATTGGTAATAGATGCCAGATGTATTGTGACTTGAAAATATATGATTAACGTGACATGTATTATGAATAATATGGTTTTTAAAAATAATTAAAAATATGAACAATTGGACGATACAACCGACTAAAAAATAAAGGGTTGAGTTAGGTTAGGTTATAAATCCTACTAGAGTCATTCGTGTCACCGACCTACAATTCTACGTGGGTTTGTGACAAATAAGTTAAGTGGCCAATAAAGTCAGCAAAATTGATATGGGTGAGGACACCATTAGAGACTTTTTGTTATGTTGAAAGCATGCATATTCATTAATGGCTGCTACTCTGTGCTATAAATACAAGGCTTGGGAGAGCAGATAAAAGCATACAATTACTGTTGGGAAATAGAGAAAGAGATCATATGGAGATGAAAAACAAGGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCACTCCGCCACCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGATTCCAATACACCAAGGGTCTGCCCTGCTACACTTTTGCCATGCAAAACTGACTCTGAGTGTTCTCCATGCAACTGTGTTAATGGCTCCTGCGTTTGA

mRNA sequence

ATGGAGATGAACAAGAAGGTTGCTTTGCTGGTTATGGTGGTTCTGGCGGCCGTTATGGCTCAATCCGCCGCAGTGGATGAGGCGATTCAGCTGCCGTCAGAGGGCGGAGCAGGTTGTTACGACACACCGCCGCCTCCGAGAGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCACTCCGCCACCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGATTCCAATACACCAAGGGTCTGCCCTGCTACACTTTTGCCATGCAAAACTGACTCTGAGTGTTCTCCATGCAACTGTGTTAATGGCTCCTGCGTTTGA

Coding sequence (CDS)

ATGGAGATGAACAAGAAGGTTGCTTTGCTGGTTATGGTGGTTCTGGCGGCCGTTATGGCTCAATCCGCCGCAGTGGATGAGGCGATTCAGCTGCCGTCAGAGGGCGGAGCAGGTTGTTACGACACACCGCCGCCTCCGAGAGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCACTCCGCCACCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGATTCCAATACACCAAGGGTCTGCCCTGCTACACTTTTGCCATGCAAAACTGACTCTGAGTGTTCTCCATGCAACTGTGTTAATGGCTCCTGCGTTTGA

Protein sequence

MEMNKKVALLVMVVLAAVMAQSAAVDEAIQLPSEGGAGCYDTPPPPRVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSDSNTPRVCPATLLPCKTDSECSPCNCVNGSCV
Homology
[Close]
BLAST of CmaCh16G003230 vs. TrEMBL
Match: A0A0A0KY39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-15
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 47  RVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSDSNTP---RVCPATLLPCKTDSE 106
           +V LVAMVVVMVVM  SAT  AA+DE I++PTNG  S  +TP   RVCP  +LPCKTDSE
Sbjct: 6   KVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPCKTDSE 65

Query: 107 CSPCNCVNGSCV 116
           CSPC C NGSC+
Sbjct: 66  CSPCYCNNGSCI 77

[Close]
BLAST of CmaCh16G003230 vs. TrEMBL
Match: A0A0A0KWE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-10
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1 

Query: 47  RVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSDSNTPRVCPATLLPCKTDSECSP 106
           +  LVAMVV MVVMA S TTI A DE I++  +GG    NT RVCPATLLPC+TDSECSP
Sbjct: 6   KAALVAMVVFMVVMAQSVTTITA-DETIEL--SGG---ENTARVCPATLLPCETDSECSP 65

Query: 107 CNC--VNGSCV 116
           C C   +G+CV
Sbjct: 66  CICNVKSGACV 70

[Close]
BLAST of CmaCh16G003230 vs. NCBI nr
Match: gi|700197608|gb|KGN52766.1| (hypothetical protein Csa_4G000850 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-15
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 47  RVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSDSNTP---RVCPATLLPCKTDSE 106
           +V LVAMVVVMVVM  SAT  AA+DE I++PTNG  S  +TP   RVCP  +LPCKTDSE
Sbjct: 6   KVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPCKTDSE 65

Query: 107 CSPCNCVNGSCV 116
           CSPC C NGSC+
Sbjct: 66  CSPCYCNNGSCI 77

[Close]
BLAST of CmaCh16G003230 vs. NCBI nr
Match: gi|700197609|gb|KGN52767.1| (hypothetical protein Csa_4G000860 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1 

Query: 47  RVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSDSNTPRVCPATLLPCKTDSECSP 106
           +  LVAMVV MVVMA S TTI A DE I++  +GG    NT RVCPATLLPC+TDSECSP
Sbjct: 6   KAALVAMVVFMVVMAQSVTTITA-DETIEL--SGG---ENTARVCPATLLPCETDSECSP 65

Query: 107 CNC--VNGSCV 116
           C C   +G+CV
Sbjct: 66  CICNVKSGACV 70

The following BLAST results are available for this feature:
BLAST of CmaCh16G003230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh16G003230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY39_CUCSA1.4e-1566.67Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000850 PE=4 SV=1[more]
A0A0A0KWE9_CUCSA4.0e-1063.38Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000860 PE=4 SV=1[more]
BLAST of CmaCh16G003230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh16G003230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197608|gb|KGN52766.1|2.1e-1566.67hypothetical protein Csa_4G000850 [Cucumis sativus][more]
gi|700197609|gb|KGN52767.1|5.8e-1063.38hypothetical protein Csa_4G000860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G003230.1CmaCh16G003230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G003230Cla006423Watermelon (97103) v1cmawmB293
CmaCh16G003230Csa4G000850Cucumber (Chinese Long) v2cmacuB333
CmaCh16G003230MELO3C017999Melon (DHL92) v3.5.1cmameB303
CmaCh16G003230ClCG10G010450Watermelon (Charleston Gray)cmawcgB280
CmaCh16G003230CSPI04G00390Wild cucumber (PI 183967)cmacpiB338
CmaCh16G003230CmoCh16G003410Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G003230Cp4.1LG14g04620Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G003230MELO3C017999.2Melon (DHL92) v3.6.1cmamedB354
CmaCh16G003230CsaV3_4G000340Cucumber (Chinese Long) v3cmacucB0388
CmaCh16G003230Cla97C10G193350Watermelon (97103) v2cmawmbB332
CmaCh16G003230Bhi11G000951Wax gourdcmawgoB0410
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G003230Cucumber (Gy14) v2cgybcmaB494
CmaCh16G003230Cucumber (Gy14) v2cgybcmaB750
CmaCh16G003230Melon (DHL92) v3.6.1cmamedB331
CmaCh16G003230Melon (DHL92) v3.6.1cmamedB363
CmaCh16G003230Silver-seed gourdcarcmaB0406
CmaCh16G003230Silver-seed gourdcarcmaB0526
CmaCh16G003230Cucumber (Chinese Long) v3cmacucB0413
CmaCh16G003230Cucumber (Chinese Long) v3cmacucB0414
CmaCh16G003230Watermelon (97103) v2cmawmbB342
CmaCh16G003230Wax gourdcmawgoB0446
CmaCh16G003230Cucurbita maxima (Rimu)cmacmaB135
CmaCh16G003230Cucurbita maxima (Rimu)cmacmaB340
CmaCh16G003230Cucurbita maxima (Rimu)cmacmaB351
CmaCh16G003230Cucumber (Gy14) v1cgycmaB0226
CmaCh16G003230Cucumber (Gy14) v1cgycmaB0197
CmaCh16G003230Cucumber (Gy14) v1cgycmaB0623
CmaCh16G003230Cucurbita moschata (Rifu)cmacmoB318
CmaCh16G003230Cucurbita moschata (Rifu)cmacmoB338
CmaCh16G003230Wild cucumber (PI 183967)cmacpiB351
CmaCh16G003230Cucumber (Chinese Long) v2cmacuB347
CmaCh16G003230Cucumber (Chinese Long) v2cmacuB348
CmaCh16G003230Melon (DHL92) v3.5.1cmameB287
CmaCh16G003230Melon (DHL92) v3.5.1cmameB311
CmaCh16G003230Watermelon (Charleston Gray)cmawcgB293
CmaCh16G003230Cucurbita pepo (Zucchini)cmacpeB351
CmaCh16G003230Bottle gourd (USVL1VR-Ls)cmalsiB304
CmaCh16G003230Bottle gourd (USVL1VR-Ls)cmalsiB307