CmoCh16G003410 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G003410
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 1576182 .. 1577692 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAACAAGAAGGTTGCTTTGCTGGTTATGGTGGTTCTGGCGGCGGTTATGGCTCAATCCGCGGCCGTGGATGAGGCGATTCAGCTGCCGTCGGAGGGCGGAGCAGGTTGTTACGACACACCGCCCCCTCCAAGAGTATGTCCGGTTATGATATTGCCGTGTAAAACTGACTCTGAGTGCTCTCCATGTTACTGTGTTAATGGCTCCTGCGTTTGATGAGCAAAAACAAAAGGAAGAAGGAAAAGATTGTCATTAAGCACTGTTGCGTTGTTGTTTGTTCTTTTCCTTTTTTTTCTATGTTCTAATAAAAAAAACTTCCCTTTTCATCACTTTTTGTCTTGCAAAATTAATCTCTCTCTATTTTTTTGGTGTTCATGTGATTACACGAGATTCTACGCCCGTTAGAGAAGAGAACGAAGTATTTTTTTATAAGGGTGTGGAAACATCTCACTAGTGTACGCGTTTTGTAATTGTGGAGCTCACTACAAGCTAAAATAGATAATAACAGCTAGCTACAAATTTAATGACCCATCTCACTAGTATACGCGTTTTGTAATTGTGGAGCTGACTACAACCTAAAACAGACAATAACAGCTAGCTACAGATTCAATGACCCATCTCACTAGTATACGCGTTTTGTAATTGTGGAGCTGAATACAAGCTAAAACAGATAATAACAGCTAGCTACAAATTCAATGACTCGAATAATTTGAATCACCTAATCCAAACAATAAGTGTTGTGTTGGGTTGGGTTTTTTTTGGTTTGGATTGGGATGAATTTTTTGAAAATCGAAAAATTTGGTATGGTTTGGTTCACGGGTTGGAACGTATTTGATCGAGTCAACCTGACCCACTAGAAAATAGGATTTACAATCCAACTCAACCCTACAGTACTTTTTAAATTGTTATGAATATTAAGAGGATTTTAGTTATTAATGTAACATGTATTATGAATAATATGGTTTTTTTAAAATAATTAAAAAAATGAACAATTGGACGATACAACCCGACTAAAAAATAAAGGGTTGAGTTAGGTTAGGTTATAAACCCTACTCGAGTCATTCGTGTCACCGACCTACAATTCTACGTGGGTTTGTGACGAATAAGCTAAGTGACCAATAAAGTAACGAAATTGATAAGGGTGAGGACGCGATTAGAGACTTTTTGTTACGTTGAAAGCATGAATATTCATTAATGGCTGCTGCTCTGTGCTATAAATACAAGGCTTGGGAGAGCAAATAAAACCATACAATTGCTGTTGGGAAATAGAGAGAGATCATATGGAGATGAAAAACAAGGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCACTCCGCCACCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGAATCCGATACACCCAGGGTGTGCCCGGCTACACTTTTGCCATGCAAAACTGACTCTGAGTGCTCTCCATGCAACTGTGTCAATGGCTCCTGCGTTTGA

mRNA sequence

ATGGAGATGAACAAGAAGGTTGCTTTGCTGGTTATGGTGGTTCTGGCGGCGGTTATGGCTCAATCCGCGGCCGTGGATGAGGCGATTCAGCTGCCGTCGGAGGGCGGAGCAGGTTGTTACGACACACCGCCCCCTCCAAGAGTATGTCCGGTTATGATATTGCCGTGTAAAACTGACTCTGAGTGCTCTCCATGTTACTGTGTTAATGGCTCCTGCAGAGATCATATGGAGATGAAAAACAAGGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCACTCCGCCACCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGAATCCGATACACCCAGGGTGTGCCCGGCTACACTTTTGCCATGCAAAACTGACTCTGAGTGCTCTCCATGCAACTGTGTCAATGGCTCCTGCGTTTGA

Coding sequence (CDS)

ATGGAGATGAACAAGAAGGTTGCTTTGCTGGTTATGGTGGTTCTGGCGGCGGTTATGGCTCAATCCGCGGCCGTGGATGAGGCGATTCAGCTGCCGTCGGAGGGCGGAGCAGGTTGTTACGACACACCGCCCCCTCCAAGAGTATGTCCGGTTATGATATTGCCGTGTAAAACTGACTCTGAGTGCTCTCCATGTTACTGTGTTAATGGCTCCTGCAGAGATCATATGGAGATGAAAAACAAGGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCACTCCGCCACCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGAATCCGATACACCCAGGGTGTGCCCGGCTACACTTTTGCCATGCAAAACTGACTCTGAGTGCTCTCCATGCAACTGTGTCAATGGCTCCTGCGTTTGA
Homology
[Close]
BLAST of CmoCh16G003410 vs. TrEMBL
Match: A0A0A0KY39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-20
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 1 

Query: 1  MEMNKKVALLVMVVLAAVMAQSA----AVDEAIQLPSEGGAGCYDTPPPPRVCPVMILPC 60
          MEM  KVAL+ MVV+  VM +SA    A+DE I+LP+ G A  YDTPPPPRVCP+MILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCVNGSC 73
          KTDSECSPCYC NGSC
Sbjct: 61 KTDSECSPCYCNNGSC 76

[Close]
BLAST of CmoCh16G003410 vs. TrEMBL
Match: A0A0A0KWE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 76  MEMKNKVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSESDTPRVCPATLLPCKTD 135
           MEMKNK  LVAMVV MVVMA S TTI A DE I++  +GG    +T RVCPATLLPC+TD
Sbjct: 1   MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGG---ENTARVCPATLLPCETD 60

Query: 136 SECSPCNC--VNGSCV 150
           SECSPC C   +G+CV
Sbjct: 61  SECSPCICNVKSGACV 70

[Close]
BLAST of CmoCh16G003410 vs. NCBI nr
Match: gi|700197608|gb|KGN52766.1| (hypothetical protein Csa_4G000850 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 4.7e-20
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 1 

Query: 1  MEMNKKVALLVMVVLAAVMAQSA----AVDEAIQLPSEGGAGCYDTPPPPRVCPVMILPC 60
          MEM  KVAL+ MVV+  VM +SA    A+DE I+LP+ G A  YDTPPPPRVCP+MILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCVNGSC 73
          KTDSECSPCYC NGSC
Sbjct: 61 KTDSECSPCYCNNGSC 76

[Close]
BLAST of CmoCh16G003410 vs. NCBI nr
Match: gi|700197609|gb|KGN52767.1| (hypothetical protein Csa_4G000860 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-12
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 76  MEMKNKVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSESDTPRVCPATLLPCKTD 135
           MEMKNK  LVAMVV MVVMA S TTI A DE I++  +GG    +T RVCPATLLPC+TD
Sbjct: 1   MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGG---ENTARVCPATLLPCETD 60

Query: 136 SECSPCNC--VNGSCV 150
           SECSPC C   +G+CV
Sbjct: 61  SECSPCICNVKSGACV 70

The following BLAST results are available for this feature:
BLAST of CmoCh16G003410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G003410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY39_CUCSA3.3e-2069.74Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000850 PE=4 SV=1[more]
A0A0A0KWE9_CUCSA1.5e-1265.79Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000860 PE=4 SV=1[more]
BLAST of CmoCh16G003410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G003410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197608|gb|KGN52766.1|4.7e-2069.74hypothetical protein Csa_4G000850 [Cucumis sativus][more]
gi|700197609|gb|KGN52767.1|2.1e-1265.79hypothetical protein Csa_4G000860 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G003410.1CmoCh16G003410.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00286PTI_1coord: 47..73
score: 1.6coord: 123..149
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G003410CmaCh16G003230Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G003410Cla006423Watermelon (97103) v1cmowmB287
CmoCh16G003410Csa4G000850Cucumber (Chinese Long) v2cmocuB322
CmoCh16G003410MELO3C017999Melon (DHL92) v3.5.1cmomeB298
CmoCh16G003410ClCG10G010450Watermelon (Charleston Gray)cmowcgB273
CmoCh16G003410CSPI04G00390Wild cucumber (PI 183967)cmocpiB329
CmoCh16G003410Cp4.1LG14g04620Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G003410MELO3C017999.2Melon (DHL92) v3.6.1cmomedB342
CmoCh16G003410CsaV3_4G000340Cucumber (Chinese Long) v3cmocucB0385
CmoCh16G003410Cla97C10G193350Watermelon (97103) v2cmowmbB316
CmoCh16G003410Bhi11G000951Wax gourdcmowgoB0405
CmoCh16G003410CsGy4G000350Cucumber (Gy14) v2cgybcmoB465
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G003410Cucumber (Chinese Long) v3cmocucB0369
CmoCh16G003410Cucumber (Chinese Long) v3cmocucB0391
CmoCh16G003410Cucumber (Chinese Long) v3cmocucB0408
CmoCh16G003410Cucumber (Chinese Long) v3cmocucB0409
CmoCh16G003410Watermelon (97103) v2cmowmbB333
CmoCh16G003410Wax gourdcmowgoB0444
CmoCh16G003410Cucurbita moschata (Rifu)cmocmoB010
CmoCh16G003410Cucurbita moschata (Rifu)cmocmoB096
CmoCh16G003410Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G003410Cucurbita moschata (Rifu)cmocmoB296
CmoCh16G003410Cucumber (Gy14) v1cgycmoB0190
CmoCh16G003410Cucumber (Gy14) v1cgycmoB0219
CmoCh16G003410Cucumber (Gy14) v1cgycmoB0625
CmoCh16G003410Cucumber (Gy14) v1cgycmoB0964
CmoCh16G003410Cucurbita maxima (Rimu)cmacmoB133
CmoCh16G003410Cucurbita maxima (Rimu)cmacmoB502
CmoCh16G003410Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G003410Wild cucumber (PI 183967)cmocpiB336
CmoCh16G003410Wild cucumber (PI 183967)cmocpiB344
CmoCh16G003410Cucumber (Chinese Long) v2cmocuB328
CmoCh16G003410Cucumber (Chinese Long) v2cmocuB337
CmoCh16G003410Cucumber (Chinese Long) v2cmocuB338
CmoCh16G003410Melon (DHL92) v3.5.1cmomeB304
CmoCh16G003410Melon (DHL92) v3.5.1cmomeB280
CmoCh16G003410Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G003410Cucurbita pepo (Zucchini)cmocpeB321
CmoCh16G003410Bottle gourd (USVL1VR-Ls)cmolsiB291
CmoCh16G003410Bottle gourd (USVL1VR-Ls)cmolsiB294
CmoCh16G003410Bottle gourd (USVL1VR-Ls)cmolsiB298
CmoCh16G003410Cucumber (Gy14) v2cgybcmoB471
CmoCh16G003410Cucumber (Gy14) v2cgybcmoB732
CmoCh16G003410Melon (DHL92) v3.6.1cmomedB349
CmoCh16G003410Melon (DHL92) v3.6.1cmomedB317
CmoCh16G003410Melon (DHL92) v3.6.1cmomedB341
CmoCh16G003410Silver-seed gourdcarcmoB0258
CmoCh16G003410Silver-seed gourdcarcmoB0402
CmoCh16G003410Silver-seed gourdcarcmoB0509