Csa3G852440 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G852440
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 35324949 .. 35325330 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCACCATTTTTCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCCATAATGTCTATGGCCGAAAGTTAATTGATTAATTTTGTTTTTTGGGATTATTCTTTGATTCTTATTCAACAAATTTCTGGGATTTTCTTTGTATGTATGGAGTATCTAT

mRNA sequence

ATGCCCACCATTTTTCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCCATAATGTCTATGGCCGAAAGTTAA

Coding sequence (CDS)

ATGCCCACCATTTTTCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCCATAATGTCTATGGCCGAAAGTTAA

Protein sequence

MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES*

Homology

[Close]

BLAST of Csa3G852440 vs. TrEMBL
Match: A0A0A0LD23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G852440 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]

BLAST of Csa3G852440 vs. TrEMBL
Match: B9N1L2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41500g PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-14
Identity = 52/108 (48.15%), Postives = 61/108 (56.48%), Query Frame = 1


Query: 1   MPTIFQSQP-----PPRRTPSVAGREPGRNRAV-------RSTCRSFSFGGMVRGGRNLM 60
           M TI Q Q      PP R     G    RN  V       RSTC   +  G VR  ++  
Sbjct: 1   METISQKQTRGRLQPPARQSLGEGNRVRRNNQVASISPRPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  ALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 97
            +P D+ RRNQ + E+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 61  LVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of Csa3G852440 vs. TrEMBL
Match: B9HZY7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12430g PE=4 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-12
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 8   QPPPRRTPSVAGREPGRNRAV------RSTCRSFSFGGMVRGGRNLMALPGDRC-RRNQG 67
           Q P R+      R    N+ V      RSTC   +  G VR  ++   +PGD+  RR+Q 
Sbjct: 14  QLPTRQALGEGSRVRRNNQVVPIPPRPRSTCTCSNRPGSVRCSKHGYMVPGDKLIRRHQA 73

Query: 68  SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 97
           ++E+LRRAL PP+RR TLRW NFRPTPSRLS MSMA
Sbjct: 74  NKELLRRALAPPNRRLTLRWFNFRPTPSRLSNMSMA 109

[Close]

BLAST of Csa3G852440 vs. TrEMBL
Match: B9T365_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0129360 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-12
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 22  PGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRN-QGSREVLRRALMPPSRRPTLRW 81
           P  +   RSTC   +  G VR  ++   LP D+ RR+ Q SRE+LRRAL PP+R+ +LRW
Sbjct: 42  PASSPRPRSTCTCSNRPGSVRCSKHGYVLPSDKLRRHHQASREILRRALAPPNRKMSLRW 101

Query: 82  MNFRPTPSRLSIMSMA 97
            NFRPTPSRLS MSMA
Sbjct: 102 WNFRPTPSRLSNMSMA 117

[Close]

BLAST of Csa3G852440 vs. TrEMBL
Match: A0A072VBI5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g080030 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.3e-12
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1


Query: 8   QPPPRRTPSVAGREPG---RNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQGSREV 67
           Q PP+ + S   +  G    ++  R  C   +  G VR  R+   +PG+R ++   S+E+
Sbjct: 18  QLPPKMSFSGQNKNEGYMSMSQRFRPACTCLNRPGSVRCARHGYVVPGERLKKRLASKEI 77

Query: 68  LRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 97
           LRRAL PP +R  LRW+NF+PTPSRLSIMSMA
Sbjct: 78  LRRALTPPPKRLGLRWLNFKPTPSRLSIMSMA 109

[Close]

BLAST of Csa3G852440 vs. TAIR10
Match: AT3G15518.1 (AT3G15518.1 unknown protein)

HSP 1 Score: 68.2 bits (165), Expect = 3.3e-12
Identity = 47/100 (47.00%), Postives = 50/100 (50.00%), Query Frame = 1


Query: 12  RRTPSVAGRE-PGRNRAVRSTCRSFSFGGMVRGGRNLMALPGD-RCRRN----------- 71
           RR PS  G E PGR+   R   RS   G  VR        PG  +C R+           
Sbjct: 5   RRIPSGEGVEMPGRSETNRIRRRSHGSGLRVRVACTCSGRPGSTKCARHGFVVPSDERLM 64

Query: 72  ----QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMS 95
                GSREVLRRAL PP RR  LRW+NFRPTPSRL  MS
Sbjct: 65  RKASDGSREVLRRALTPPIRRMNLRWLNFRPTPSRLCKMS 104

[Close]

BLAST of Csa3G852440 vs. NCBI nr
Match: gi|778688989|ref|XP_011652880.1| (PREDICTED: uncharacterized protein LOC105435142 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]

BLAST of Csa3G852440 vs. NCBI nr
Match: gi|659109339|ref|XP_008454664.1| (PREDICTED: uncharacterized protein LOC103495017 [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 1


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRR+PSVAGRE GR RAVRSTCRS SFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS+MSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

[Close]

BLAST of Csa3G852440 vs. NCBI nr
Match: gi|566154106|ref|XP_006370308.1| (hypothetical protein POPTR_0001s41500g [Populus trichocarpa])

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-14
Identity = 52/108 (48.15%), Postives = 61/108 (56.48%), Query Frame = 1


Query: 1   MPTIFQSQP-----PPRRTPSVAGREPGRNRAV-------RSTCRSFSFGGMVRGGRNLM 60
           M TI Q Q      PP R     G    RN  V       RSTC   +  G VR  ++  
Sbjct: 1   METISQKQTRGRLQPPARQSLGEGNRVRRNNQVASISPRPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  ALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 97
            +P D+ RRNQ + E+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 61  LVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of Csa3G852440 vs. NCBI nr
Match: gi|566195099|ref|XP_002316920.2| (hypothetical protein POPTR_0011s12430g [Populus trichocarpa])

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-12
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 8   QPPPRRTPSVAGREPGRNRAV------RSTCRSFSFGGMVRGGRNLMALPGDRC-RRNQG 67
           Q P R+      R    N+ V      RSTC   +  G VR  ++   +PGD+  RR+Q 
Sbjct: 14  QLPTRQALGEGSRVRRNNQVVPIPPRPRSTCTCSNRPGSVRCSKHGYMVPGDKLIRRHQA 73

Query: 68  SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 97
           ++E+LRRAL PP+RR TLRW NFRPTPSRLS MSMA
Sbjct: 74  NKELLRRALAPPNRRLTLRWFNFRPTPSRLSNMSMA 109

[Close]

BLAST of Csa3G852440 vs. NCBI nr
Match: gi|255583867|ref|XP_002532684.1| (PREDICTED: uncharacterized protein LOC8268674 [Ricinus communis])

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 22  PGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRN-QGSREVLRRALMPPSRRPTLRW 81
           P  +   RSTC   +  G VR  ++   LP D+ RR+ Q SRE+LRRAL PP+R+ +LRW
Sbjct: 42  PASSPRPRSTCTCSNRPGSVRCSKHGYVLPSDKLRRHHQASREILRRALAPPNRKMSLRW 101

Query: 82  MNFRPTPSRLSIMSMA 97
            NFRPTPSRLS MSMA
Sbjct: 102 WNFRPTPSRLSNMSMA 117

The following BLAST results are available for this feature:

BLAST of Csa3G852440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD23_CUCSA	1.0e-49	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G852440 PE=4 SV=1	[more]
B9N1L2_POPTR	3.0e-14	48.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41500g PE=4 SV=1	[more]
B9HZY7_POPTR	2.2e-12	48.96	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12430g PE=4 SV=2	[more]
B9T365_RICCO	2.8e-12	55.26	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0129360 PE=4 SV=1	[more]
A0A072VBI5_MEDTR	6.3e-12	44.57	Uncharacterized protein OS=Medicago truncatula GN=MTR_2g080030 PE=4 SV=1	[more]

BLAST of Csa3G852440 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15518.1	3.3e-12	47.00	unknown protein	[more]

BLAST of Csa3G852440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688989\|ref\|XP_011652880.1\|	1.4e-49	100.00	PREDICTED: uncharacterized protein LOC105435142 [Cucumis sativus]	[more]
gi\|659109339\|ref\|XP_008454664.1\|	1.9e-46	94.90	PREDICTED: uncharacterized protein LOC103495017 [Cucumis melo]	[more]
gi\|566154106\|ref\|XP_006370308.1\|	4.4e-14	48.15	hypothetical protein POPTR_0001s41500g [Populus trichocarpa]	[more]
gi\|566195099\|ref\|XP_002316920.2\|	3.1e-12	48.96	hypothetical protein POPTR_0011s12430g [Populus trichocarpa]	[more]
gi\|255583867\|ref\|XP_002532684.1\|	4.1e-12	55.26	PREDICTED: uncharacterized protein LOC8268674 [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU124619	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G852440.1	Csa3G852440.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU124619	CU124619	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G852440	Cla023409	Watermelon (97103) v1	cuwmB274
Csa3G852440	MELO3C018234	Melon (DHL92) v3.5.1	cumeB222
Csa3G852440	ClCG11G018300	Watermelon (Charleston Gray)	cuwcgB201
Csa3G852440	Lsi04G012990	Bottle gourd (USVL1VR-Ls)	culsiB193
Csa3G852440	MELO3C018234.2	Melon (DHL92) v3.6.1	cumedB208
Csa3G852440	Cla97C11G224450	Watermelon (97103) v2	cuwmbB193
Csa3G852440	Bhi09G001711	Wax gourd	cuwgoB341
Csa3G852440	CSPI03G42120	Wild cucumber (PI 183967)	cpicuB120
Csa3G852440	Cucsa.341770	Cucumber (Gy14) v1	cgycuB478
Csa3G852440	CmaCh09G008860	Cucurbita maxima (Rimu)	cmacuB018
Csa3G852440	CmoCh01G012460	Cucurbita moschata (Rifu)	cmocuB435
Csa3G852440	CmoCh09G008740	Cucurbita moschata (Rifu)	cmocuB009
Csa3G852440	Cp4.1LG06g07060	Cucurbita pepo (Zucchini)	cpecuB780
Csa3G852440	Carg14681	Silver-seed gourd	carcuB0337
Csa3G852440	Carg12757	Silver-seed gourd	carcuB0920

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G852440	Cucumber (Gy14) v2	cgybcuB110
Csa3G852440	Cucumber (Chinese Long) v2	cucuB019
Csa3G852440	Cucurbita maxima (Rimu)	cmacuB448
Csa3G852440	Melon (DHL92) v3.5.1	cumeB188
Csa3G852440	Watermelon (Charleston Gray)	cuwcgB219
Csa3G852440	Watermelon (97103) v1	cuwmB216
Csa3G852440	Cucurbita pepo (Zucchini)	cpecuB560