Carg14681 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14681
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_048 : 371300 .. 371593 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACAATTTTCCAGTCCCAACAGCAGCCTGCTTCCAGGCCGTCGCACGCCGGCGCCGTAAGGGAAGGTGGCCGAAGCCGGAGCCTTAGATCGAATTGCAGGAGCTTGAGTTTTGGGGGAGTGGGTAGAGGTGGCCGTAATGTGACGGCAGCCGGAGATAAGCTCCGGCGGCTTCAGGGCAGAAGAGAGATGTTGAGAAGGGCGTTGACGCCGCCCAACCGGAGACCCACTCTCCGGTGGTTGAATTTCCGAGCAACTCCCAGTCGGCTCTCGAATATGTCTATGGCTTGA

mRNA sequence

ATGCCTACAATTTTCCAGTCCCAACAGCAGCCTGCTTCCAGGCCGTCGCACGCCGGCGCCGTAAGGGAAGGTGGCCGAAGCCGGAGCCTTAGATCGAATTGCAGGAGCTTGAGTTTTGGGGGAGTGGGTAGAGGTGGCCGTAATGTGACGGCAGCCGGAGATAAGCTCCGGCGGCTTCAGGGCAGAAGAGAGATGTTGAGAAGGGCGTTGACGCCGCCCAACCGGAGACCCACTCTCCGGTGGTTGAATTTCCGAGCAACTCCCAGTCGGCTCTCGAATATGTCTATGGCTTGA

Coding sequence (CDS)

ATGCCTACAATTTTCCAGTCCCAACAGCAGCCTGCTTCCAGGCCGTCGCACGCCGGCGCCGTAAGGGAAGGTGGCCGAAGCCGGAGCCTTAGATCGAATTGCAGGAGCTTGAGTTTTGGGGGAGTGGGTAGAGGTGGCCGTAATGTGACGGCAGCCGGAGATAAGCTCCGGCGGCTTCAGGGCAGAAGAGAGATGTTGAGAAGGGCGTTGACGCCGCCCAACCGGAGACCCACTCTCCGGTGGTTGAATTTCCGAGCAACTCCCAGTCGGCTCTCGAATATGTCTATGGCTTGA

Protein sequence

MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA

Homology

[Close]

BLAST of Carg14681 vs. NCBI nr
Match: XP_011652880.1 (PREDICTED: uncharacterized protein LOC105435142 [Cucumis sativus] >KGN59895.1 hypothetical protein Csa_3G852440 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 6.8e-24
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTA-AGDKLRRL 60
          MPTIFQSQ  P   PS AG  RE GR+R++RS CRS SFGG+ RGGRN+ A  GD+ RR 
Sbjct: 1  MPTIFQSQPPPRRTPSVAG--REPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRN 60

Query: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 98
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Sbjct: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96

[Close]

BLAST of Carg14681 vs. NCBI nr
Match: CDP05872.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-08
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 54  DKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSM 97
           DK RR Q ++E+LRRALTPP RRPTLRWL+FR TPSRL NMSM
Sbjct: 61  DKFRRKQAKKEILRRALTPPVRRPTLRWLDFRPTPSRLRNMSM 103

[Close]

BLAST of Carg14681 vs. NCBI nr
Match: XP_021608479.1 (uncharacterized protein LOC110612112 [Manihot esculenta] >OAY54940.1 hypothetical protein MANES_03G114400 [Manihot esculenta])

HSP 1 Score: 67.0 bits (162), Expect = 4.0e-08
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 18  AGAVREGGRSRSLRSNCRSLSFGGVGRGGRN-VTAAGDKLRRLQGRREMLRRALTPPNRR 77
           A  VR   R  + R  C   +  G  R  R+     GDKL+R Q  +E++RRALTPPNR+
Sbjct: 26  ANRVRRNYRHHNHRPACTCSNRPGSVRCSRHGYIVPGDKLKRRQANKEIIRRALTPPNRK 85

Query: 78  PTLRWLNFRATPSRLSNMSMA 98
            TLRW NFR TPSRLSNMS A
Sbjct: 86  LTLRWWNFRPTPSRLSNMSTA 106

[Close]

BLAST of Carg14681 vs. NCBI nr
Match: XP_021679078.1 (uncharacterized protein LOC110663908 [Hevea brasiliensis])

HSP 1 Score: 67.0 bits (162), Expect = 4.0e-08
Identity = 47/97 (48.45%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 9   QQPASR--PSHAGAVREGGR-----SRSLRSNCRSLSFGGVGRGGRN-VTAAGDKLRRLQ 68
           Q P S    +H   VR   R     S  LR +C   +  G  R  R+     GDKL+R Q
Sbjct: 15  QSPPSENTTAHTNRVRRNHRLPPVSSPRLRPSCTCSNRPGSARCSRHGYLIPGDKLKRRQ 74

Query: 69  GRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 98
             +E++RRALTPPNR+ TLRW NFR TPSRLSNMS A
Sbjct: 75  ANKEIIRRALTPPNRKLTLRWWNFRPTPSRLSNMSTA 111

[Close]

BLAST of Carg14681 vs. NCBI nr
Match: PNT59349.1 (hypothetical protein POPTR_001G404500v3 [Populus trichocarpa])

HSP 1 Score: 66.2 bits (160), Expect = 6.8e-08
Identity = 50/108 (46.30%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 1   MPTIFQSQQQPASRPSHAGAVREGGRSR----------SLRSNCR-SLSFGGVGRGGRNV 60
           M TI Q Q +   +P    ++ EG R R            RS C  S   G V       
Sbjct: 1   METISQKQTRGRLQPPARQSLGEGNRVRRNNQVASISPRPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  TAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 98
               DKLRR Q   E+LRRAL PPNRR TLRW NF+ TPSRLSNMSMA
Sbjct: 61  LVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of Carg14681 vs. TAIR10
Match: AT3G15518.1 (unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 22  REGGRSRSLRSNCRSLSFGGVGRGGRN--VTAAGDKLRR--LQGRREMLRRALTPPNRRP 81
           R  G    +R  C      G  +  R+  V  + ++L R    G RE+LRRALTPP RR 
Sbjct: 27  RSHGSGLRVRVACTCSGRPGSTKCARHGFVVPSDERLMRKASDGSREVLRRALTPPIRRM 86

Query: 82  TLRWLNFRATPSRLSNMS 96
            LRWLNFR TPSRL  MS
Sbjct: 87  NLRWLNFRPTPSRLCKMS 104

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BLAST of Carg14681 vs. TrEMBL
Match: tr|A0A0A0LD23|A0A0A0LD23_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.5e-24
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTA-AGDKLRRL 60
          MPTIFQSQ  P   PS AG  RE GR+R++RS CRS SFGG+ RGGRN+ A  GD+ RR 
Sbjct: 1  MPTIFQSQPPPRRTPSVAG--REPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRN 60

Query: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 98
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Sbjct: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96

[Close]

BLAST of Carg14681 vs. TrEMBL
Match: tr|A0A068UC67|A0A068UC67_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021180001 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 54  DKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSM 97
           DK RR Q ++E+LRRALTPP RRPTLRWL+FR TPSRL NMSM
Sbjct: 61  DKFRRKQAKKEILRRALTPPVRRPTLRWLDFRPTPSRLRNMSM 103

[Close]

BLAST of Carg14681 vs. TrEMBL
Match: tr|A0A2C9W6J8|A0A2C9W6J8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G114400 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 18  AGAVREGGRSRSLRSNCRSLSFGGVGRGGRN-VTAAGDKLRRLQGRREMLRRALTPPNRR 77
           A  VR   R  + R  C   +  G  R  R+     GDKL+R Q  +E++RRALTPPNR+
Sbjct: 26  ANRVRRNYRHHNHRPACTCSNRPGSVRCSRHGYIVPGDKLKRRQANKEIIRRALTPPNRK 85

Query: 78  PTLRWLNFRATPSRLSNMSMA 98
            TLRW NFR TPSRLSNMS A
Sbjct: 86  LTLRWWNFRPTPSRLSNMSTA 106

[Close]

BLAST of Carg14681 vs. TrEMBL
Match: tr|B9N1L2|B9N1L2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500v3 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-08
Identity = 50/108 (46.30%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 1   MPTIFQSQQQPASRPSHAGAVREGGRSR----------SLRSNCR-SLSFGGVGRGGRNV 60
           M TI Q Q +   +P    ++ EG R R            RS C  S   G V       
Sbjct: 1   METISQKQTRGRLQPPARQSLGEGNRVRRNNQVASISPRPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  TAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 98
               DKLRR Q   E+LRRAL PPNRR TLRW NF+ TPSRLSNMSMA
Sbjct: 61  LVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of Carg14681 vs. TrEMBL
Match: tr|A0A067KRZ7|A0A067KRZ7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00664 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.9e-08
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 30  LRSNCRSLSFGGVGRGGRN--VTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRAT 89
           +R NC   S  G+ R  R+  V    +KL+R    +E+LRRAL+PPNR+ TLRW NF+ T
Sbjct: 46  IRPNCTCSSRPGLVRCSRHGYVVPGDNKLKRHHANKEILRRALSPPNRKMTLRWWNFQPT 105

Query: 90  PSRLSNMSMA 98
           PSRLSNMSMA
Sbjct: 106 PSRLSNMSMA 115

The following BLAST results are available for this feature:

BLAST of Carg14681 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652880.1	6.8e-24	69.39	PREDICTED: uncharacterized protein LOC105435142 [Cucumis sativus] >KGN59895.1 hy...	[more]
CDP05872.1	3.1e-08	76.74	unnamed protein product [Coffea canephora]	[more]
XP_021608479.1	4.0e-08	51.85	uncharacterized protein LOC110612112 [Manihot esculenta] >OAY54940.1 hypothetica...	[more]
XP_021679078.1	4.0e-08	48.45	uncharacterized protein LOC110663908 [Hevea brasiliensis]	[more]
PNT59349.1	6.8e-08	46.30	hypothetical protein POPTR_001G404500v3 [Populus trichocarpa]	[more]

BLAST of Carg14681 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15518.1	1.6e-06	46.15	unknown protein	[more]

BLAST of Carg14681 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14681 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LD23\|A0A0A0LD23_CUCSA	4.5e-24	69.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1	[more]
tr\|A0A068UC67\|A0A068UC67_COFCA	2.0e-08	76.74	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021180001 PE=4 ...	[more]
tr\|A0A2C9W6J8\|A0A2C9W6J8_MANES	2.6e-08	51.85	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G114400 PE=4 SV=...	[more]
tr\|B9N1L2\|B9N1L2_POPTR	4.5e-08	46.30	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500v3 PE=...	[more]
tr\|A0A067KRZ7\|A0A067KRZ7_JATCU	5.9e-08	54.29	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00664 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14681-RA	Carg14681-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14681	Cla023409	Watermelon (97103) v1	carwmB0304
Carg14681	Csa3G852440	Cucumber (Chinese Long) v2	carcuB0337
Carg14681	MELO3C018234	Melon (DHL92) v3.5.1	carmeB0312
Carg14681	ClCG11G018300	Watermelon (Charleston Gray)	carwcgB0305
Carg14681	CSPI03G42120	Wild cucumber (PI 183967)	carcpiB0343
Carg14681	Cucsa.341770	Cucumber (Gy14) v1	carcgyB0367
Carg14681	CmaCh09G008860	Cucurbita maxima (Rimu)	carcmaB0434
Carg14681	CmoCh09G008740	Cucurbita moschata (Rifu)	carcmoB0428
Carg14681	CmoCh01G012460	Cucurbita moschata (Rifu)	carcmoB0430
Carg14681	Lsi04G012990	Bottle gourd (USVL1VR-Ls)	carlsiB284
Carg14681	Cp4.1LG06g07060	Cucurbita pepo (Zucchini)	carcpeB0434
Carg14681	MELO3C018234.2	Melon (DHL92) v3.6.1	carmedB0321
Carg14681	CsaV3_3G044520	Cucumber (Chinese Long) v3	carcucB0342
Carg14681	Cla97C11G224450	Watermelon (97103) v2	carwmbB0321
Carg14681	Bhi09G001711	Wax gourd	carwgoB0395

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg14681	Carg12757	Silver-seed gourd	carcarB339

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14681	Cucumber (Gy14) v2	carcgybB0321
Carg14681	Cucurbita maxima (Rimu)	carcmaB0437
Carg14681	Cucurbita pepo (Zucchini)	carcpeB0431