Csa3G825030 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G825030
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 32672093 .. 32673006 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTCCTTTTCGAAAAATATACAAAGAAACAGAGAAAAACTCAATTTTCTTACTGTTATTACTCATCACTTACTCATTCATTCATAAATCTAAAAACAACCCATTTCTCAAAATCCTCTTAACAGTAATGGGTCGCTCTTCTTTTCTCTCTATTCTTCTTCTTCTTTCTTTCTTAATCACTCTCTGTTTCTCTAATGGTAATTTTCTAATCTCTTCTTAAATTTCCTTTTTTTTTTTTTTAATTTTAATTATTTTACTAAAAGGGTTTGTTTTCTGTTGCAAATCTGAAGGATTTGGAAGGAATTTGAGGATGGTGGTGGAGCCTCTTGATTCACATCATAACTCCAGAGTTCTACTAGAGGTAACAAAATTGTTTTTTTTTTTTTTTTTTTCTTTAAAGTTTTTTGGTGAATGAATCTTGGAAATTTTGGTATTTAATTTGTGGGTTCTGTTCGCAAATAAATTTAAAAAACAAAAAATAAAAAATGCAGGAAAGTGGAAGAAAATGGAGGATGATGAAGATGGAGACAATGGATTATGCAGATCCAGAGCCAAACACGAATGTAAAAGGTGGCTATGTTTCTCCACCTCCTCCTCCAAATCATGGATGAAGTTTAATTCAATTCTCTATAAATTAAAACAAAGGGTTTCTTTAATTTTTCTATTTTGTGTTTGTGTGTGTGGGAATGTTATTTGTTCATAGTATTTGTTTGGGAAAGGTAGGGAAAGAAGGGTTTATTGATGTTGAATTACCTAATTTTATTTTGTTTTTTTTTGTAAAGTGGGTTTGTTTGTGGATTCATAAATCATGCATTTTATTAAAGTTGCCTTTTTGCTTTTAAGTCTGAAAAAAGTTGGAAAAGAAAAGGGCTTGTATATGGTTGTATACAATAAATGGGAAATTGAATGAGC

mRNA sequence

ATGGGTCGCTCTTCTTTTCTCTCTATTCTTCTTCTTCTTTCTTTCTTAATCACTCTCTGTTTCTCTAATGGATTTGGAAGGAATTTGAGGATGGTGGTGGAGCCTCTTGATTCACATCATAACTCCAGAGTTCTACTAGAGGAAAGTGGAAGAAAATGGAGGATGATGAAGATGGAGACAATGGATTATGCAGATCCAGAGCCAAACACGAATGTAAAAGGTGGCTATGTTTCTCCACCTCCTCCTCCAAATCATGGATGA

Coding sequence (CDS)

ATGGGTCGCTCTTCTTTTCTCTCTATTCTTCTTCTTCTTTCTTTCTTAATCACTCTCTGTTTCTCTAATGGATTTGGAAGGAATTTGAGGATGGTGGTGGAGCCTCTTGATTCACATCATAACTCCAGAGTTCTACTAGAGGAAAGTGGAAGAAAATGGAGGATGATGAAGATGGAGACAATGGATTATGCAGATCCAGAGCCAAACACGAATGTAAAAGGTGGCTATGTTTCTCCACCTCCTCCTCCAAATCATGGATGA

Protein sequence

MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMETMDYADPEPNTNVKGGYVSPPPPPNHG*

Homology

[Close]

BLAST of Csa3G825030 vs. TrEMBL
Match: A0A0A0LCS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60

Query: 61 MDYADPEPNTNVKGGYVSPPPPPNHG 87
          MDYADPEPNTNVKGGYVSPPPPPNHG
Sbjct: 61 MDYADPEPNTNVKGGYVSPPPPPNHG 86

[Close]

BLAST of Csa3G825030 vs. TrEMBL
Match: M5X086_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014215mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.8e-09
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGR  FL + ++ S L+ LCFS+GFGRNL   +  +D    S ++ +E+  K R M +  
Sbjct: 1  MGRPWFLRVFIV-SCLLALCFSHGFGRNL---MGTIDLEDFSVLVSKETHGKPRKM-ITV 60

Query: 61 MDYADPEPNTNVKGGYV-SPPPPPN 85
          MDYADPEPN N + GY+ +PPP PN
Sbjct: 61 MDYADPEPNVNPRTGYIFTPPPQPN 80

[Close]

BLAST of Csa3G825030 vs. TrEMBL
Match: A0A0A0KSB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.9e-08
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDS-HHNSRVLLEES----GRKWRM 60
          M      S LLLLS  + L F++G      + VE ++S  H S V +  S    G K R 
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHG------LKVEMIESLGHGSNVRISPSLKGIGGKSRK 60

Query: 61 MKMETMDYADPEPNTNVKGGYVSPPPPPN 85
          M +E MDYADP PNTN + GY++PPPPP+
Sbjct: 61 MMIEIMDYADPGPNTNTRSGYLNPPPPPS 83

[Close]

BLAST of Csa3G825030 vs. TrEMBL
Match: W9QF36_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013585 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-07
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGR  FL+  LL+SF + L FS+GFGR L+  ++  D    S V ++E G   R + +E 
Sbjct: 1  MGRPCFLTTALLVSFFMFLLFSHGFGRTLKSTIQDED----SSVEVKEVGGNSREI-IEV 60

Query: 61 MDYADPEPNTNVKGGYVSPPP 82
          MDY  P PN N +G  VSPPP
Sbjct: 61 MDYEGPHPNKNERGINVSPPP 76

[Close]

BLAST of Csa3G825030 vs. TrEMBL
Match: D7SXD8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00990 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-07
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGRS FL  L L S L+ L  S+GFGR     +E  +   +S VL++ES  K R+M ++ 
Sbjct: 1  MGRSCFLRALFL-SALLLLSSSHGFGRK---AMESFELKDSSTVLVKESAGKARVM-IQM 60

Query: 61 MDYADPEPNTNVKGGYVSPPPP 83
          MDY +P PNTN K GY   PPP
Sbjct: 61 MDYEEPVPNTNPKSGYYLSPPP 77

[Close]

BLAST of Csa3G825030 vs. NCBI nr
Match: gi|778685535|ref|XP_011652234.1| (PREDICTED: uncharacterized protein LOC105435001 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 3.9e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60

Query: 61 MDYADPEPNTNVKGGYVSPPPPPNHG 87
          MDYADPEPNTNVKGGYVSPPPPPNHG
Sbjct: 61 MDYADPEPNTNVKGGYVSPPPPPNHG 86

[Close]

BLAST of Csa3G825030 vs. NCBI nr
Match: gi|595973437|ref|XP_007217712.1| (hypothetical protein PRUPE_ppa014215mg [Prunus persica])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGR  FL + ++ S L+ LCFS+GFGRNL   +  +D    S ++ +E+  K R M +  
Sbjct: 1  MGRPWFLRVFIV-SCLLALCFSHGFGRNL---MGTIDLEDFSVLVSKETHGKPRKM-ITV 60

Query: 61 MDYADPEPNTNVKGGYV-SPPPPPN 85
          MDYADPEPN N + GY+ +PPP PN
Sbjct: 61 MDYADPEPNVNPRTGYIFTPPPQPN 80

[Close]

BLAST of Csa3G825030 vs. NCBI nr
Match: gi|700197291|gb|KGN52468.1| (hypothetical protein Csa_5G636600 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 7.0e-08
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDS-HHNSRVLLEES----GRKWRM 60
          M      S LLLLS  + L F++G      + VE ++S  H S V +  S    G K R 
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHG------LKVEMIESLGHGSNVRISPSLKGIGGKSRK 60

Query: 61 MKMETMDYADPEPNTNVKGGYVSPPPPPN 85
          M +E MDYADP PNTN + GY++PPPPP+
Sbjct: 61 MMIEIMDYADPGPNTNTRSGYLNPPPPPS 83

[Close]

BLAST of Csa3G825030 vs. NCBI nr
Match: gi|703068067|ref|XP_010088141.1| (hypothetical protein L484_013585 [Morus notabilis])

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGR  FL+  LL+SF + L FS+GFGR L+  ++  D    S V ++E G   R + +E 
Sbjct: 1  MGRPCFLTTALLVSFFMFLLFSHGFGRTLKSTIQDED----SSVEVKEVGGNSREI-IEV 60

Query: 61 MDYADPEPNTNVKGGYVSPPP 82
          MDY  P PN N +G  VSPPP
Sbjct: 61 MDYEGPHPNKNERGINVSPPP 76

[Close]

BLAST of Csa3G825030 vs. NCBI nr
Match: gi|296082934|emb|CBI22235.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGRS FL  L L S L+ L  S+GFGR     +E  +   +S VL++ES  K R+M ++ 
Sbjct: 1  MGRSCFLRALFL-SALLLLSSSHGFGRK---AMESFELKDSSTVLVKESAGKARVM-IQM 60

Query: 61 MDYADPEPNTNVKGGYVSPPPP 83
          MDY +P PNTN K GY   PPP
Sbjct: 61 MDYEEPVPNTNPKSGYYLSPPP 77

The following BLAST results are available for this feature:

BLAST of Csa3G825030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCS0_CUCSA	2.7e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825030 PE=4 SV=1	[more]
M5X086_PRUPE	9.8e-09	47.06	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014215mg PE=4 SV=1	[more]
A0A0A0KSB7_CUCSA	4.9e-08	43.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1	[more]
W9QF36_9ROSA	1.4e-07	45.68	Uncharacterized protein OS=Morus notabilis GN=L484_013585 PE=4 SV=1	[more]
D7SXD8_VITVI	1.4e-07	47.56	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00990 PE=4 SV=...	[more]

BLAST of Csa3G825030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778685535\|ref\|XP_011652234.1\|	3.9e-43	100.00	PREDICTED: uncharacterized protein LOC105435001 [Cucumis sativus]	[more]
gi\|595973437\|ref\|XP_007217712.1\|	1.4e-08	47.06	hypothetical protein PRUPE_ppa014215mg [Prunus persica]	[more]
gi\|700197291\|gb\|KGN52468.1\|	7.0e-08	43.82	hypothetical protein Csa_5G636600 [Cucumis sativus]	[more]
gi\|703068067\|ref\|XP_010088141.1\|	2.0e-07	45.68	hypothetical protein L484_013585 [Morus notabilis]	[more]
gi\|296082934\|emb\|CBI22235.3\|	2.0e-07	47.56	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU088076	cucumber EST collection version 3.0	transcribed_cluster
CU090365	cucumber EST collection version 3.0	transcribed_cluster
CU121014	cucumber EST collection version 3.0	transcribed_cluster
CU141034	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G825030.1	Csa3G825030.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU121014	CU121014	transcribed_cluster
CU090365	CU090365	transcribed_cluster
CU141034	CU141034	transcribed_cluster
CU088076	CU088076	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37908	FAMILY NOT NAMED	coord: 2..82 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G825030	Cla016994	Watermelon (97103) v1	cuwmB198
Csa3G825030	MELO3C009860	Melon (DHL92) v3.5.1	cumeB223
Csa3G825030	ClCG10G015200	Watermelon (Charleston Gray)	cuwcgB194
Csa3G825030	Lsi03G014980	Bottle gourd (USVL1VR-Ls)	culsiB186
Csa3G825030	MELO3C009860.2	Melon (DHL92) v3.6.1	cumedB207
Csa3G825030	Cla97C10G198070	Watermelon (97103) v2	cuwmbB186
Csa3G825030	Bhi11G002471	Wax gourd	cuwgoB220
Csa3G825030	CSPI03G38880	Wild cucumber (PI 183967)	cpicuB120
Csa3G825030	Cucsa.338750	Cucumber (Gy14) v1	cgycuB478
Csa3G825030	CmaCh11G010160	Cucurbita maxima (Rimu)	cmacuB125
Csa3G825030	CmoCh11G010380	Cucurbita moschata (Rifu)	cmocuB111
Csa3G825030	Cp4.1LG04g01660	Cucurbita pepo (Zucchini)	cpecuB670
Csa3G825030	Carg22886	Silver-seed gourd	carcuB0237

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G825030	Bottle gourd (USVL1VR-Ls)	culsiB176
Csa3G825030	Cucumber (Gy14) v2	cgybcuB110
Csa3G825030	Cucumber (Gy14) v2	cgybcuB215
Csa3G825030	Cucumber (Gy14) v2	cgybcuB216
Csa3G825030	Melon (DHL92) v3.6.1	cumedB155
Csa3G825030	Melon (DHL92) v3.6.1	cumedB161
Csa3G825030	Silver-seed gourd	carcuB0288
Csa3G825030	Silver-seed gourd	carcuB0467
Csa3G825030	Watermelon (97103) v2	cuwmbB254
Csa3G825030	Wax gourd	cuwgoB267
Csa3G825030	Cucumber (Chinese Long) v2	cucuB103
Csa3G825030	Cucumber (Chinese Long) v2	cucuB106
Csa3G825030	Cucumber (Gy14) v1	cgycuB228
Csa3G825030	Cucumber (Gy14) v1	cgycuB408
Csa3G825030	Cucurbita maxima (Rimu)	cmacuB239
Csa3G825030	Cucurbita maxima (Rimu)	cmacuB284
Csa3G825030	Cucurbita maxima (Rimu)	cmacuB704
Csa3G825030	Cucurbita moschata (Rifu)	cmocuB226
Csa3G825030	Cucurbita moschata (Rifu)	cmocuB272
Csa3G825030	Cucurbita moschata (Rifu)	cmocuB695
Csa3G825030	Watermelon (Charleston Gray)	cuwcgB227
Csa3G825030	Melon (DHL92) v3.5.1	cumeB174
Csa3G825030	Melon (DHL92) v3.5.1	cumeB179
Csa3G825030	Watermelon (Charleston Gray)	cuwcgB178
Csa3G825030	Watermelon (97103) v1	cuwmB183
Csa3G825030	Watermelon (97103) v1	cuwmB238
Csa3G825030	Cucurbita pepo (Zucchini)	cpecuB170
Csa3G825030	Cucurbita pepo (Zucchini)	cpecuB597