CmaCh11G010160 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G010160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr11 : 5504940 .. 5505975 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGGCTTATATTGAAAGCTCCATAAAATAAAGCTCAGAAAGGCTGTATGCTATATATATATATAATCTTGAACTCACATAAAACAAATCTGAAAACGGCGATTGAGTTGGAGATATCTTCAAAAACCCCATTTTTATAGCCTTTCATCCCTCCTTGCAGTTAAGTGGCAGCACTTTCCTATTTTCTCTGCAACCAACAACGAAAGAGAGAACAAAAGCCCAGTTTTTGTCTTCTTTCTTCATTGATTCATTGATTCATTCATAAACTCGTAAATCTAAAGCCGACCCATCTCCCAAAATCCCCTTAACTCAAATGGGTCGCTCTCCTTTTCTCTCAATTCTTCTTCTTTCTCTCTTAATCGCTCCCTGTTTCACTAATGGTACATATTTCATTTTCCTCTGCTTTCTTCTTAAAAACCCCTGTTTTCTTCCCTTTTTGATGTTTTAATTTAATGGGTTTTTGGTTTTTTTTTTTGGTGTAAATCTCAAGGATTTGGAGGCAAAATGAGGATGATGGAGGGTGTTGATACACACCATGGCTCCAGAGTTGAATTAAAGGTAATTAAAGAGGGTGTTTTTTTGGGGAATCTGAGGGATCTGAAAATGGTGTTTGATTTTAGGGTTGAAAAATTGCAGGAAAGTGGAGAAGAAATGAGGAGGAGGATGATGATGATGCTGATGGAGACGATGGATTATTCAGATCCAGAACCAAACACCAACGTAAAAGGTGGCGGCTATGTTTCTCCACCTCCTCCCCTTCGTGGATGAACTCTTTGATTCTGTTTATGTTTTTGTTCATAGTTTTTGTTTGGGGAAGTTAGGGGAAGAAAGAAGTTTCGTTGATATATGTTAAATTGCCTGGTTTTTGTTTTGTTTTTGTATAGAGTTTTGTTTGTGGTTTCCCTGTGGGATTCAATAAATGCTGCATTTTGTTGAAGTTTTTCCTGCATAAAAGCAAATCACTTCGAGTTATCTTTTCGTTACATGACATATCACGTGTGTATCTTTCCAACTCCTAACATCACATTCGTTCTA

mRNA sequence

CTTTGGCTTATATTGAAAGCTCCATAAAATAAAGCTCAGAAAGGCTGTATGCTATATATATATATAATCTTGAACTCACATAAAACAAATCTGAAAACGGCGATTGAGTTGGAGATATCTTCAAAAACCCCATTTTTATAGCCTTTCATCCCTCCTTGCAGTTAAGTGGCAGCACTTTCCTATTTTCTCTGCAACCAACAACGAAAGAGAGAACAAAAGCCCAGTTTTTGTCTTCTTTCTTCATTGATTCATTGATTCATTCATAAACTCGTAAATCTAAAGCCGACCCATCTCCCAAAATCCCCTTAACTCAAATGGGTCGCTCTCCTTTTCTCTCAATTCTTCTTCTTTCTCTCTTAATCGCTCCCTGTTTCACTAATGGATTTGGAGGCAAAATGAGGATGATGGAGGGTGTTGATACACACCATGGCTCCAGAGTTGAATTAAAGGAAAGTGGAGAAGAAATGAGGAGGAGGATGATGATGATGCTGATGGAGACGATGGATTATTCAGATCCAGAACCAAACACCAACGTAAAAGGTGGCGGCTATGTTTCTCCACCTCCTCCCCTTCGTGGATGAACTCTTTGATTCTGTTTATGTTTTTGTTCATAGTTTTTGTTTGGGGAAGTTAGGGGAAGAAAGAAGTTTCGTTGATATATGTTAAATTGCCTGGTTTTTGTTTTGTTTTTGTATAGAGTTTTGTTTGTGGTTTCCCTGTGGGATTCAATAAATGCTGCATTTTGTTGAAGTTTTTCCTGCATAAAAGCAAATCACTTCGAGTTATCTTTTCGTTACATGACATATCACGTGTGTATCTTTCCAACTCCTAACATCACATTCGTTCTA

Coding sequence (CDS)

ATGGGTCGCTCTCCTTTTCTCTCAATTCTTCTTCTTTCTCTCTTAATCGCTCCCTGTTTCACTAATGGATTTGGAGGCAAAATGAGGATGATGGAGGGTGTTGATACACACCATGGCTCCAGAGTTGAATTAAAGGAAAGTGGAGAAGAAATGAGGAGGAGGATGATGATGATGCTGATGGAGACGATGGATTATTCAGATCCAGAACCAAACACCAACGTAAAAGGTGGCGGCTATGTTTCTCCACCTCCTCCCCTTCGTGGATGA

Protein sequence

MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSRVELKESGEEMRRRMMMMLMETMDYSDPEPNTNVKGGGYVSPPPPLRG

Homology

[Close]

BLAST of CmaCh11G010160 vs. TrEMBL
Match: A0A0A0LCS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-20
Identity = 60/87 (68.97%), Postives = 68/87 (78.16%), Query Frame = 1


Query: 1  MGRSPFLSILLL-SLLIAPCFTNGFGGKMRMM-EGVDTHHGSRVELKESGEEMRRRMMMM 60
          MGRS FLSILLL S LI  CF+NGFG  +RM+ E +D+HH SRV L+ESG + R    MM
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWR----MM 60

Query: 61 LMETMDYSDPEPNTNVKGGGYVSPPPP 86
           METMDY+DPEPNTNVK GGYVSPPPP
Sbjct: 61 KMETMDYADPEPNTNVK-GGYVSPPPP 82

[Close]

BLAST of CmaCh11G010160 vs. TrEMBL
Match: D7SXD8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00990 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 1


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSRVELKESGEEMRRRMMMMLM 60
          MGRS FL  L LS L+    ++GFG K   ME  +    S V +KES  + R     +++
Sbjct: 1  MGRSCFLRALFLSALLLLSSSHGFGRKA--MESFELKDSSTVLVKESAGKAR-----VMI 60

Query: 61 ETMDYSDPEPNTNVKGGGYVSPPP 85
          + MDY +P PNTN K G Y+SPPP
Sbjct: 61 QMMDYEEPVPNTNPKSGYYLSPPP 77

[Close]

BLAST of CmaCh11G010160 vs. TrEMBL
Match: A0A0B0N658_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_14499 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.0e-06
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSRVELKESGEEMRRRMMMMLM 60
          MGRS FL++LLLS+L+   F+ GF  + +MME V+    S  +L+E+ +  R      ++
Sbjct: 1  MGRSCFLNLLLLSMLLLLSFSQGFSIR-KMMETVEFEE-STAQLEENADTSRE-----MI 60

Query: 61 ETMDYSDPEPNTNVKGGGYVSPPP 85
          E MDY DP PN N + G   SPPP
Sbjct: 61 EIMDYKDPGPNVNPRTGYIFSPPP 77

[Close]

BLAST of CmaCh11G010160 vs. NCBI nr
Match: gi|778685535|ref|XP_011652234.1| (PREDICTED: uncharacterized protein LOC105435001 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 6.2e-20
Identity = 60/87 (68.97%), Postives = 68/87 (78.16%), Query Frame = 1


Query: 1  MGRSPFLSILLL-SLLIAPCFTNGFGGKMRMM-EGVDTHHGSRVELKESGEEMRRRMMMM 60
          MGRS FLSILLL S LI  CF+NGFG  +RM+ E +D+HH SRV L+ESG + R    MM
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWR----MM 60

Query: 61 LMETMDYSDPEPNTNVKGGGYVSPPPP 86
           METMDY+DPEPNTNVK GGYVSPPPP
Sbjct: 61 KMETMDYADPEPNTNVK-GGYVSPPPP 82

[Close]

BLAST of CmaCh11G010160 vs. NCBI nr
Match: gi|296082934|emb|CBI22235.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 1


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSRVELKESGEEMRRRMMMMLM 60
          MGRS FL  L LS L+    ++GFG K   ME  +    S V +KES  + R     +++
Sbjct: 1  MGRSCFLRALFLSALLLLSSSHGFGRKA--MESFELKDSSTVLVKESAGKAR-----VMI 60

Query: 61 ETMDYSDPEPNTNVKGGGYVSPPP 85
          + MDY +P PNTN K G Y+SPPP
Sbjct: 61 QMMDYEEPVPNTNPKSGYYLSPPP 77

[Close]

BLAST of CmaCh11G010160 vs. NCBI nr
Match: gi|728830510|gb|KHG09953.1| (hypothetical protein F383_14499 [Gossypium arboreum])

HSP 1 Score: 58.2 bits (139), Expect = 8.7e-06
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSRVELKESGEEMRRRMMMMLM 60
          MGRS FL++LLLS+L+   F+ GF  + +MME V+    S  +L+E+ +  R      ++
Sbjct: 1  MGRSCFLNLLLLSMLLLLSFSQGFSIR-KMMETVEFEE-STAQLEENADTSRE-----MI 60

Query: 61 ETMDYSDPEPNTNVKGGGYVSPPP 85
          E MDY DP PN N + G   SPPP
Sbjct: 61 EIMDYKDPGPNVNPRTGYIFSPPP 77

The following BLAST results are available for this feature:

BLAST of CmaCh11G010160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G010160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCS0_CUCSA	4.3e-20	68.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825030 PE=4 SV=1	[more]
D7SXD8_VITVI	1.2e-06	44.05	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00990 PE=4 SV=...	[more]
A0A0B0N658_GOSAR	6.0e-06	42.86	Uncharacterized protein OS=Gossypium arboreum GN=F383_14499 PE=4 SV=1	[more]

BLAST of CmaCh11G010160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh11G010160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778685535\|ref\|XP_011652234.1\|	6.2e-20	68.97	PREDICTED: uncharacterized protein LOC105435001 [Cucumis sativus]	[more]
gi\|296082934\|emb\|CBI22235.3\|	1.7e-06	44.05	unnamed protein product [Vitis vinifera]	[more]
gi\|728830510\|gb\|KHG09953.1\|	8.7e-06	42.86	hypothetical protein F383_14499 [Gossypium arboreum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G010160.1	CmaCh11G010160.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G010160	Cucsa.338750	Cucumber (Gy14) v1	cgycmaB0923
CmaCh11G010160	Cla016994	Watermelon (97103) v1	cmawmB089
CmaCh11G010160	Csa3G825030	Cucumber (Chinese Long) v2	cmacuB125
CmaCh11G010160	ClCG10G015200	Watermelon (Charleston Gray)	cmawcgB088
CmaCh11G010160	CSPI03G38880	Wild cucumber (PI 183967)	cmacpiB122
CmaCh11G010160	CmoCh11G010380	Cucurbita moschata (Rifu)	cmacmoB112
CmaCh11G010160	Lsi03G014980	Bottle gourd (USVL1VR-Ls)	cmalsiB119
CmaCh11G010160	Cp4.1LG04g01660	Cucurbita pepo (Zucchini)	cmacpeB147
CmaCh11G010160	CsaV3_3G041320	Cucumber (Chinese Long) v3	cmacucB0142
CmaCh11G010160	Cla97C10G198070	Watermelon (97103) v2	cmawmbB095
CmaCh11G010160	Bhi11G002471	Wax gourd	cmawgoB0094
CmaCh11G010160	Carg22886	Silver-seed gourd	carcmaB0291

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G010160	Watermelon (97103) v2	cmawmbB152
CmaCh11G010160	Wax gourd	cmawgoB0101
CmaCh11G010160	Cucurbita maxima (Rimu)	cmacmaB077
CmaCh11G010160	Cucurbita maxima (Rimu)	cmacmaB132
CmaCh11G010160	Cucurbita maxima (Rimu)	cmacmaB134
CmaCh11G010160	Cucurbita moschata (Rifu)	cmacmoB130
CmaCh11G010160	Melon (DHL92) v3.5.1	cmameB127
CmaCh11G010160	Cucurbita pepo (Zucchini)	cmacpeB113
CmaCh11G010160	Cucurbita pepo (Zucchini)	cmacpeB146
CmaCh11G010160	Bottle gourd (USVL1VR-Ls)	cmalsiB110
CmaCh11G010160	Cucumber (Gy14) v2	cgybcmaB292
CmaCh11G010160	Melon (DHL92) v3.6.1	cmamedB086
CmaCh11G010160	Melon (DHL92) v3.6.1	cmamedB139
CmaCh11G010160	Silver-seed gourd	carcmaB0358
CmaCh11G010160	Silver-seed gourd	carcmaB0606
CmaCh11G010160	Silver-seed gourd	carcmaB0959
CmaCh11G010160	Cucumber (Chinese Long) v3	cmacucB0156