Cla016994 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016994
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 21229669 .. 21229932 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGGCTTTTGATTCACATCATGGCTCTAGAGTTCTACTAGAGGTGACGAATTTTCTTTTCTTTTCTTTTTTTTTTGGTGGAATGAATCTTGAAATTTTGATTTTGTGGGTTTTTTTTTTTTTGAATAAAAATTAGCAGGAAAGTGGAAGAAAATGGAGGATGATGATGATGGAGACAATGGATTATTCAGATCCAGAACCAAATACCAACGTAAAAGGTGGCTATGTTTCTCCACCCCCTCCTCCAAATCGTGGATGA

mRNA sequence

ATGGTGGAGGCTTTTGATTCACATCATGGCTCTAGAGTTCTACTAGAGGAAAGTGGAAGAAAATGGAGGATGATGATGATGGAGACAATGGATTATTCAGATCCAGAACCAAATACCAACGTAAAAGGTGGCTATGTTTCTCCACCCCCTCCTCCAAATCGTGGATGA

Coding sequence (CDS)

ATGGTGGAGGCTTTTGATTCACATCATGGCTCTAGAGTTCTACTAGAGGAAAGTGGAAGAAAATGGAGGATGATGATGATGGAGACAATGGATTATTCAGATCCAGAACCAAATACCAACGTAAAAGGTGGCTATGTTTCTCCACCCCCTCCTCCAAATCGTGGATGA

Protein sequence

MVEAFDSHHGSRVLLEESGRKWRMMMMETMDYSDPEPNTNVKGGYVSPPPPPNRG

Homology

[Close]

BLAST of Cla016994 vs. TrEMBL
Match: A0A0A0LCS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-21
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1


Query: 1  MVEAFDSHHGSRVLLEESGRKWRMMMMETMDYSDPEPNTNVKGGYVSPPPPPNRG 56
          +VE  DSHH SRVLLEESGRKWRMM METMDY+DPEPNTNVKGGYVSPPPPPN G
Sbjct: 32 VVEPLDSHHNSRVLLEESGRKWRMMKMETMDYADPEPNTNVKGGYVSPPPPPNHG 86

[Close]

BLAST of Cla016994 vs. TrEMBL
Match: A0A0A0KSB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-06
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 9  HGSRVLLEES----GRKWRMMMMETMDYSDPEPNTNVKGGYVSPPPPPN 54
          HGS V +  S    G K R MM+E MDY+DP PNTN + GY++PPPPP+
Sbjct: 35 HGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS 83

[Close]

BLAST of Cla016994 vs. TrEMBL
Match: A0A059AEU1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01355 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-06
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1


Query: 16 EESGRKWRMMMMETMDYSDPEPNTNVKGGY-VSPPPPPNR 55
          +ESG KWR M+ E MDYSDPEPNTN + GY +SPPPPP R
Sbjct: 52 QESGGKWRKMV-EVMDYSDPEPNTNPRSGYLLSPPPPPPR 90

[Close]

BLAST of Cla016994 vs. NCBI nr
Match: gi|778685535|ref|XP_011652234.1| (PREDICTED: uncharacterized protein LOC105435001 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-21
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1


Query: 1  MVEAFDSHHGSRVLLEESGRKWRMMMMETMDYSDPEPNTNVKGGYVSPPPPPNRG 56
          +VE  DSHH SRVLLEESGRKWRMM METMDY+DPEPNTNVKGGYVSPPPPPN G
Sbjct: 32 VVEPLDSHHNSRVLLEESGRKWRMMKMETMDYADPEPNTNVKGGYVSPPPPPNHG 86

[Close]

BLAST of Cla016994 vs. NCBI nr
Match: gi|629085538|gb|KCW51895.1| (hypothetical protein EUGRSUZ_J01355 [Eucalyptus grandis])

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1


Query: 16 EESGRKWRMMMMETMDYSDPEPNTNVKGGY-VSPPPPPNR 55
          +ESG KWR M+ E MDYSDPEPNTN + GY +SPPPPP R
Sbjct: 52 QESGGKWRKMV-EVMDYSDPEPNTNPRSGYLLSPPPPPPR 90

[Close]

BLAST of Cla016994 vs. NCBI nr
Match: gi|700197291|gb|KGN52468.1| (hypothetical protein Csa_5G636600 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 9  HGSRVLLEES----GRKWRMMMMETMDYSDPEPNTNVKGGYVSPPPPPN 54
          HGS V +  S    G K R MM+E MDY+DP PNTN + GY++PPPPP+
Sbjct: 35 HGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPS 83

The following BLAST results are available for this feature:

BLAST of Cla016994 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCS0_CUCSA	2.4e-21	87.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825030 PE=4 SV=1	[more]
A0A0A0KSB7_CUCSA	1.7e-06	55.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636600 PE=4 SV=1	[more]
A0A059AEU1_EUCGR	1.7e-06	70.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01355 PE=4 SV=1	[more]

BLAST of Cla016994 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778685535\|ref\|XP_011652234.1\|	3.5e-21	87.27	PREDICTED: uncharacterized protein LOC105435001 [Cucumis sativus]	[more]
gi\|629085538\|gb\|KCW51895.1\|	2.4e-06	70.00	hypothetical protein EUGRSUZ_J01355 [Eucalyptus grandis]	[more]
gi\|700197291\|gb\|KGN52468.1\|	2.4e-06	55.10	hypothetical protein Csa_5G636600 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU11632	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU12607	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla016994	Cla016994.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU11632	WMU11632	transcribed_cluster
WMU12607	WMU12607	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla016994	Cla97C10G198070	Watermelon (97103) v2	wmwmbB051
Cla016994	Csa3G825030	Cucumber (Chinese Long) v2	cuwmB198
Cla016994	MELO3C009860	Melon (DHL92) v3.5.1	mewmB346
Cla016994	ClCG10G015200	Watermelon (Charleston Gray)	wcgwmB051
Cla016994	CSPI03G38880	Wild cucumber (PI 183967)	cpiwmB198
Cla016994	Cucsa.338750	Cucumber (Gy14) v1	cgywmB609
Cla016994	CmaCh11G010160	Cucurbita maxima (Rimu)	cmawmB089
Cla016994	CmoCh11G010380	Cucurbita moschata (Rifu)	cmowmB080
Cla016994	Lsi03G014980	Bottle gourd (USVL1VR-Ls)	lsiwmB240
Cla016994	Cp4.1LG04g01660	Cucurbita pepo (Zucchini)	cpewmB641
Cla016994	MELO3C009860.2	Melon (DHL92) v3.6.1	medwmB344
Cla016994	Carg22886	Silver-seed gourd	carwmB0201
Cla016994	CsaV3_3G041320	Cucumber (Chinese Long) v3	cucwmB208
Cla016994	Bhi11G002471	Wax gourd	wgowmB021

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla016994	Melon (DHL92) v3.6.1	medwmB006
Cla016994	Melon (DHL92) v3.6.1	medwmB047
Cla016994	Silver-seed gourd	carwmB0249
Cla016994	Silver-seed gourd	carwmB0431
Cla016994	Cucumber (Chinese Long) v3	cucwmB393
Cla016994	Cucumber (Chinese Long) v3	cucwmB397
Cla016994	Watermelon (97103) v2	wmwmbB076
Cla016994	Wax gourd	wgowmB122
Cla016994	Watermelon (97103) v1	wmwmB009
Cla016994	Watermelon (97103) v1	wmwmB045
Cla016994	Cucumber (Gy14) v1	cgywmB281
Cla016994	Cucumber (Gy14) v1	cgywmB520
Cla016994	Cucurbita maxima (Rimu)	cmawmB228
Cla016994	Cucurbita maxima (Rimu)	cmawmB257
Cla016994	Cucurbita maxima (Rimu)	cmawmB658
Cla016994	Cucurbita moschata (Rifu)	cmowmB214
Cla016994	Cucurbita moschata (Rifu)	cmowmB652
Cla016994	Wild cucumber (PI 183967)	cpiwmB376
Cla016994	Wild cucumber (PI 183967)	cpiwmB379
Cla016994	Melon (DHL92) v3.5.1	mewmB008
Cla016994	Melon (DHL92) v3.5.1	mewmB045
Cla016994	Watermelon (Charleston Gray)	wcgwmB018
Cla016994	Watermelon (Charleston Gray)	wcgwmB272
Cla016994	Cucumber (Chinese Long) v2	cuwmB368
Cla016994	Cucumber (Chinese Long) v2	cuwmB371
Cla016994	Cucurbita pepo (Zucchini)	cpewmB167
Cla016994	Cucurbita pepo (Zucchini)	cpewmB597
Cla016994	Bottle gourd (USVL1VR-Ls)	lsiwmB181
Cla016994	Cucumber (Gy14) v2	cgybwmB187
Cla016994	Cucumber (Gy14) v2	cgybwmB347