Carg22886 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22886
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein, putative
Location	Cucurbita_argyrosperma_scaffold_124 : 42292 .. 43049 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGCCCAGTTTTTGTCTTCTTTCTTCATTGATTCATTGATTCATTCATAAATTCGTAAATCTAAAACCGACCCATCTCTCAAAATCCCCTTAATTCAAATGGGTCGCTCTCCTTTTCTCTCAATTCTTCTTCTTTCTCTCTTAATCGCACCCTGTTTCACTAATGGTACATATTTCATTTTCCTCTGCTTTCTTCTTAAAAACCCCTGTTTTCTTCCCTTTTTGATGTTTTAATTTAATGGGTTTTTGGTTTTTTTGTGTAAATCTCCAGGATTTGGAGGCAAAATGAGGATGATGGAGGGCGTTGATACACACCATGGCTCCAGTGTTGAATTAAAGGTAATTAAAGAGGGTGTTTTTTTGGGGAATCTGAGGGATCTGAAAATGGTGTTTGATTTTAGGGTTGAAAAATTGCAGGAAAGTGGAGAAGAAATGAGGAGGAGGATGATGATGATGGAGACGATGGATTATTCAGATCCAGAACCAAACACCAACGTAAAAGGTGGCGGCTATGTTTCTCCACCTCCTCCCCTTCGTGGATGAACTTTTTGATTCTGTTTATGTTTTTGTTCATAGTTTTTGTTTGTGGAAGTTAAGGAAAGAAAGCGGTTTCGTTGATATATATTAAATTGCCTGGTTTTTTGTTTTGTTTTTGTATAGAGTTTTGGTTGTGGGATTCAATAAATGATGCATTTTGTTGAAGTTTTTCTTTTTCTGTTCCTTATTGTAAATAATGGGAAGAAATTATCTTAATGAAA

mRNA sequence

AAAGCCCAGTTTTTGTCTTCTTTCTTCATTGATTCATTGATTCATTCATAAATTCGTAAATCTAAAACCGACCCATCTCTCAAAATCCCCTTAATTCAAATGGGTCGCTCTCCTTTTCTCTCAATTCTTCTTCTTTCTCTCTTAATCGCACCCTGTTTCACTAATGGATTTGGAGGCAAAATGAGGATGATGGAGGGCGTTGATACACACCATGGCTCCAGTGTTGAATTAAAGGAAAGTGGAGAAGAAATGAGGAGGAGGATGATGATGATGGAGACGATGGATTATTCAGATCCAGAACCAAACACCAACGTAAAAGGTGGCGGCTATGTTTCTCCACCTCCTCCCCTTCGTGGATGAACTTTTTGATTCTGTTTATGTTTTTGTTCATAGTTTTTGTTTGTGGAAGTTAAGGAAAGAAAGCGGTTTCGTTGATATATATTAAATTGCCTGGTTTTTTGTTTTGTTTTTGTATAGAGTTTTGGTTGTGGGATTCAATAAATGATGCATTTTGTTGAAGTTTTTCTTTTTCTGTTCCTTATTGTAAATAATGGGAAGAAATTATCTTAATGAAA

Coding sequence (CDS)

ATGGGTCGCTCTCCTTTTCTCTCAATTCTTCTTCTTTCTCTCTTAATCGCACCCTGTTTCACTAATGGATTTGGAGGCAAAATGAGGATGATGGAGGGCGTTGATACACACCATGGCTCCAGTGTTGAATTAAAGGAAAGTGGAGAAGAAATGAGGAGGAGGATGATGATGATGGAGACGATGGATTATTCAGATCCAGAACCAAACACCAACGTAAAAGGTGGCGGCTATGTTTCTCCACCTCCTCCCCTTCGTGGATGA

Protein sequence

MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSSVELKESGEEMRRRMMMMETMDYSDPEPNTNVKGGGYVSPPPPLRG

Homology

[Close]

BLAST of Carg22886 vs. NCBI nr
Match: XP_011652234.1 (PREDICTED: uncharacterized protein LOC105435001 [Cucumis sativus] >KGN59558.1 hypothetical protein Csa_3G825030 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-19
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MGRSPFLSI-LLLSLLIAPCFTNGFGGKMRM-MEGVDTHHGSSVELKESGEEMRRRMMMM 60
          MGRS FLSI LLLS LI  CF+NGFG  +RM +E +D+HH S V L+ESG +   RMM M
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKW--RMMKM 60

Query: 61 ETMDYSDPEPNTNVKGGGYVSPPPP 84
          ETMDY+DPEPNTNVK GGYVSPPPP
Sbjct: 61 ETMDYADPEPNTNVK-GGYVSPPPP 82

[Close]

BLAST of Carg22886 vs. NCBI nr
Match: PON65370.1 (hypothetical protein PanWU01x14_116840 [Parasponia andersonii])

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGK-MRMMEGVDTHHGSSVELKESGEEMRRRMMMME 60
          MGR  F +ILL+SL +   F++GFG + ++ +EG    H SSVE+KE+G    R   M+E
Sbjct: 1  MGRRCFPTILLVSLFMLLFFSHGFGRRSLKTVEGHQEEHYSSVEVKENGGVKSRE--MIE 60

Query: 61 TMDYSDPEPNTNVKGGGYVSPPPPLR 86
            DYS+PEPNTN + G   +PPP  R
Sbjct: 61 VTDYSEPEPNTNPRAGYIFTPPPSSR 84

[Close]

BLAST of Carg22886 vs. NCBI nr
Match: POE81075.1 (hypothetical protein CFP56_69893 [Quercus suber] >POF20236.1 hypothetical protein CFP56_68897 [Quercus suber] >POF20237.1 hypothetical protein CFP56_68898 [Quercus suber])

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSSVELKESGEEMRRRMMMMET 60
          MGRS FL ILL+S L+   F++GFG K  +ME V+    S+V+ +E+  + R    + E 
Sbjct: 1  MGRSCFLKILLVSSLLVLFFSHGFGRK--VMETVEHEDNSTVQGEETIGKSRE---IAEV 60

Query: 61 MDYSDPEPNTNVKGGGYVSPPP 83
          MDYSDP PNTN K G  +SPPP
Sbjct: 61 MDYSDPGPNTNPKAGYILSPPP 77

[Close]

BLAST of Carg22886 vs. NCBI nr
Match: PON96377.1 (hypothetical protein TorRG33x02_079660 [Trema orientalis])

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGK-MRMMEGVDTHHGSSVELKESGEEMRRRMMMME 60
          MGR  F +ILL+S  +   F++GFG + ++ +EG      SSVE+KE+G    R   M+E
Sbjct: 1  MGRRCFPTILLVSFFVLLFFSHGFGRRSLKTVEGHQEESYSSVEVKENGGVKSRE--MIE 60

Query: 61 TMDYSDPEPNTNVKGGGYVSPPPPLRG 87
            DYS+PEPNTN +  GY+  PPP  G
Sbjct: 61 VTDYSEPEPNTNPR-AGYIFTPPPSSG 84

[Close]

BLAST of Carg22886 vs. NCBI nr
Match: OVA09827.1 (hypothetical protein BVC80_1753g22 [Macleaya cordata])

HSP 1 Score: 62.8 bits (151), Expect = 6.7e-07
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSSVELKESGEEMRRRMMMMET 60
          MGRS FL  LL S ++A C + GFG K+  +E  D    S+V L+E+  + R+   M+E 
Sbjct: 1  MGRSYFLRFLLFSAVLALCLSQGFGRKLMELENED----SAVLLEENTGKARK---MIEV 60

Query: 61 MDYSDPEPNTNVKGGGYVSPPP 83
          MDY+DPE NTN + G   +PPP
Sbjct: 61 MDYTDPEANTNPRTGYLFTPPP 75

[Close]

BLAST of Carg22886 vs. TrEMBL
Match: tr|A0A0A0LCS0|A0A0A0LCS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-19
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MGRSPFLSI-LLLSLLIAPCFTNGFGGKMRM-MEGVDTHHGSSVELKESGEEMRRRMMMM 60
          MGRS FLSI LLLS LI  CF+NGFG  +RM +E +D+HH S V L+ESG +   RMM M
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKW--RMMKM 60

Query: 61 ETMDYSDPEPNTNVKGGGYVSPPPP 84
          ETMDY+DPEPNTNVK GGYVSPPPP
Sbjct: 61 ETMDYADPEPNTNVK-GGYVSPPPP 82

[Close]

BLAST of Carg22886 vs. TrEMBL
Match: tr|A0A2P5CWE3|A0A2P5CWE3_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.1e-09
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGK-MRMMEGVDTHHGSSVELKESGEEMRRRMMMME 60
          MGR  F +ILL+SL +   F++GFG + ++ +EG    H SSVE+KE+G    R   M+E
Sbjct: 1  MGRRCFPTILLVSLFMLLFFSHGFGRRSLKTVEGHQEEHYSSVEVKENGGVKSRE--MIE 60

Query: 61 TMDYSDPEPNTNVKGGGYVSPPPPLR 86
            DYS+PEPNTN + G   +PPP  R
Sbjct: 61 VTDYSEPEPNTNPRAGYIFTPPPSSR 84

[Close]

BLAST of Carg22886 vs. TrEMBL
Match: tr|A0A2P4MRR5|A0A2P4MRR5_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_68897 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSSVELKESGEEMRRRMMMMET 60
          MGRS FL ILL+S L+   F++GFG K  +ME V+    S+V+ +E+  + R    + E 
Sbjct: 1  MGRSCFLKILLVSSLLVLFFSHGFGRK--VMETVEHEDNSTVQGEETIGKSRE---IAEV 60

Query: 61 MDYSDPEPNTNVKGGGYVSPPP 83
          MDYSDP PNTN K G  +SPPP
Sbjct: 61 MDYSDPGPNTNPKAGYILSPPP 77

[Close]

BLAST of Carg22886 vs. TrEMBL
Match: tr|A0A2P5FF06|A0A2P5FF06_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_079660 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGK-MRMMEGVDTHHGSSVELKESGEEMRRRMMMME 60
          MGR  F +ILL+S  +   F++GFG + ++ +EG      SSVE+KE+G    R   M+E
Sbjct: 1  MGRRCFPTILLVSFFVLLFFSHGFGRRSLKTVEGHQEESYSSVEVKENGGVKSRE--MIE 60

Query: 61 TMDYSDPEPNTNVKGGGYVSPPPPLRG 87
            DYS+PEPNTN +  GY+  PPP  G
Sbjct: 61 VTDYSEPEPNTNPR-AGYIFTPPPSSG 84

[Close]

BLAST of Carg22886 vs. TrEMBL
Match: tr|A0A2N9I673|A0A2N9I673_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47476 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1  MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSSVELKESGEEMRRRMMMMET 60
          MGRS FL ILL+S L+   F++GFG K  +ME V+    S+V+ +E+  + R    ++E 
Sbjct: 5  MGRSCFLRILLVSSLLVLFFSHGFGRK--VMETVEDEDNSTVQGEEAIGKSRE---LIEV 64

Query: 61 MDYSDPEPNTNVKGGGYVSPPP 83
          MDYSDP PNTN + G  +SPPP
Sbjct: 65 MDYSDPGPNTNPRTGYILSPPP 81

The following BLAST results are available for this feature:

BLAST of Carg22886 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652234.1	3.4e-19	69.41	PREDICTED: uncharacterized protein LOC105435001 [Cucumis sativus] >KGN59558.1 hy...	[more]
PON65370.1	1.2e-08	46.51	hypothetical protein PanWU01x14_116840 [Parasponia andersonii]	[more]
POE81075.1	1.8e-07	48.78	hypothetical protein CFP56_69893 [Quercus suber] >POF20236.1 hypothetical protei...	[more]
PON96377.1	2.3e-07	44.83	hypothetical protein TorRG33x02_079660 [Trema orientalis]	[more]
OVA09827.1	6.7e-07	45.12	hypothetical protein BVC80_1753g22 [Macleaya cordata]	[more]

BLAST of Carg22886 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg22886 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22886 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCS0\|A0A0A0LCS0_CUCSA	2.3e-19	69.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1	[more]
tr\|A0A2P5CWE3\|A0A2P5CWE3_PARAD	8.1e-09	46.51	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE...	[more]
tr\|A0A2P4MRR5\|A0A2P4MRR5_QUESU	1.2e-07	48.78	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_68897 PE=4 SV=1	[more]
tr\|A0A2P5FF06\|A0A2P5FF06_9ROSA	1.5e-07	44.83	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_079660 PE=4 S...	[more]
tr\|A0A2N9I673\|A0A2N9I673_FAGSY	2.0e-07	47.56	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47476 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22886-RA	Carg22886-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..86
None	No IPR available	PANTHER	PTHR37908	FAMILY NOT NAMED	coord: 1..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22886	Cla016994	Watermelon (97103) v1	carwmB0201
Carg22886	Csa3G825030	Cucumber (Chinese Long) v2	carcuB0237
Carg22886	MELO3C009860	Melon (DHL92) v3.5.1	carmeB0219
Carg22886	ClCG10G015200	Watermelon (Charleston Gray)	carwcgB0207
Carg22886	CSPI03G38880	Wild cucumber (PI 183967)	carcpiB0243
Carg22886	Cucsa.338750	Cucumber (Gy14) v1	carcgyB0258
Carg22886	CmaCh11G010160	Cucurbita maxima (Rimu)	carcmaB0291
Carg22886	CmoCh11G010380	Cucurbita moschata (Rifu)	carcmoB0297
Carg22886	Lsi03G014980	Bottle gourd (USVL1VR-Ls)	carlsiB191
Carg22886	Cp4.1LG04g01660	Cucurbita pepo (Zucchini)	carcpeB0302
Carg22886	CsaV3_3G041320	Cucumber (Chinese Long) v3	carcucB0241
Carg22886	Cla97C10G198070	Watermelon (97103) v2	carwmbB0215
Carg22886	Bhi11G002471	Wax gourd	carwgoB0265

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22886	Silver-seed gourd	carcarB249
Carg22886	Silver-seed gourd	carcarB250
Carg22886	Silver-seed gourd	carcarB251
Carg22886	Cucumber (Gy14) v2	carcgybB0227
Carg22886	Cucurbita maxima (Rimu)	carcmaB0292
Carg22886	Cucurbita moschata (Rifu)	carcmoB0298
Carg22886	Cucurbita pepo (Zucchini)	carcpeB0301
Carg22886	Melon (DHL92) v3.6.1	carmedB0225
Carg22886	Watermelon (97103) v2	carwmbB0217
Carg22886	Wax gourd	carwgoB0266