Csa3G824220 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGAATTAAAAAATTAATGGAAGTTGTAGATCCATAAAGCAACCTCTTTTCTCTTTTTTCAATCCTTTATAAGCCTCACTTCGCCCCTTCTAGAGAACATTGGAAATACAGAGCAAATGGAAGTTCTAAGAACAAGGGTCGGTGGCAGTGGGCTTCTGGTGGCCGTTGCGGCAGTGGTGATACTGCTGGCGGCGGTGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAACATGGGTTGGAATACTAATGTGAACTATACTACCTGGGCTCAGGGAAAGCACTTCTATTATGATGATTGGCTCTGTAAGCACCTCTATCTATAGATCTGTGAATGGTGTTTAGAGTTATTGCTGATTTTCAGATCTTATGTGGATTTTCAGCCTCTTTAGTTTGTTTTTGGGGTCTTGTTGGATTTGCCGGGGTTTTAAACCTTTAGCTTGAAGTTTTTTTTGTTCTGTTTGGTTGCTGAGAAAATTGGGGGGAAATTAATTTCTATATGAGTTGTTTTTGAATGGGTTCTTTCTCAACTCAAGATAACTTCAAAGGGATTGACTGTTTGTGCTGAGAAATGAGTGATTGAGTCGTTTCTCTGTTTATTTTGGATGAATGTGGATGAGTTAGGAACTTAGGATTGTTTGTGTTCTTGTTATTTTGTTTGATCCATATATCTCTTGCTCATGCATTGACATCTAAATACAATGTAGTGATATTTTCTTATAAATCAACTGAGTACTTTCTTCATGTTTTGTTAGAAATTTGCTATGAGATCTTTTAATTTAGTCCAAATATGCCTAAGCATGAAGTTACTAGCAAACGAGTTTACTAACAAAAGCAGGAATGTGGCTCTGGCTTGTCTGTAACCTGAAAAACACAGTGTTCTCCAAATTAACAAAAAATACTTTCGGTTTTTCGTTAGATGGGGAGTGTTTATTTGCTCCTTAGTTACTAGAAAATGAGTTCACTTAACAAAAGTGGGAAGATGTCTCTAGATTGTCTATAACCACACAATATTCTCCGAACCAACTACAAATTCCTTTGGTTTTTTTTTATTCGTTTTTCGAAACCTTACATAGAGATTAGTAACAATTGGAGGGTGATTTTGGGTCACTTCCTTACCCTTGTTGTGTACTAGTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGACTATGAGAATTGCATTTCTGATCATCCACTCCACAATTTCACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGGCCTTATTACTTCATAAGTGGAAAAGGCTTTTGCTTTGGAGGCATGAAGCTTGCTATCCATGTCGAACACCTACCTCCCCCGCCCTCATCCTCACCCTTGAACGAAAAGAGCAGTGCTCTTAGATCTACCAACACTGGACACACCCCATTCGTTCTAACCGCTGTTTTCGCCATTGCTGCTGTACTTGAAGTTTTCACTCGGGTCTGGTAGAGACCAGTTCTTACTTGATTCATATTCAATAGAGTACATTTTTCTTCACCAAATTGTGGAAGGAAGATCAAGTTATTAATTCTCTTCTTTCATATTTTTTTTTGAGGGTGTAGTGTCTCATTGTGTTATCTTTTGCTCTCACTTTGATTTAGACTTCAATGTTTCAAAATAGTTTTTCTTTTTTTTGTTTGCTTTTGAAAACTTAAATTTTGGAATTTTTGTTGTTTGGGTGGTGGATATAAAAATTGTAGGGATTGAATTTTTGATAAGACTCTAATTTATTTGTCCTGTCCTCTTAAATGGTTTTTGCAAGCAACCAA ATGGAAGTTCTAAGAACAAGGGTCGGTGGCAGTGGGCTTCTGGTGGCCGTTGCGGCAGTGGTGATACTGCTGGCGGCGGTGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAACATGGGTTGGAATACTAATGTGAACTATACTACCTGGGCTCAGGGAAAGCACTTCTATTATGATGATTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGACTATGAGAATTGCATTTCTGATCATCCACTCCACAATTTCACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGGCCTTATTACTTCATAAGTGGAAAAGGCTTTTGCTTTGGAGGCATGAAGCTTGCTATCCATGTCGAACACCTACCTCCCCCGCCCTCATCCTCACCCTTGAACGAAAAGAGCAGTGCTCTTAGATCTACCAACACTGGACACACCCCATTCGTTCTAACCGCTGTTTTCGCCATTGCTGCTGTACTTGAAGTTTTCACTCGGGTCTGGTAG ATGGAAGTTCTAAGAACAAGGGTCGGTGGCAGTGGGCTTCTGGTGGCCGTTGCGGCAGTGGTGATACTGCTGGCGGCGGTGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAACATGGGTTGGAATACTAATGTGAACTATACTACCTGGGCTCAGGGAAAGCACTTCTATTATGATGATTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGACTATGAGAATTGCATTTCTGATCATCCACTCCACAATTTCACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGGCCTTATTACTTCATAAGTGGAAAAGGCTTTTGCTTTGGAGGCATGAAGCTTGCTATCCATGTCGAACACCTACCTCCCCCGCCCTCATCCTCACCCTTGAACGAAAAGAGCAGTGCTCTTAGATCTACCAACACTGGACACACCCCATTCGTTCTAACCGCTGTTTTCGCCATTGCTGCTGTACTTGAAGTTTTCACTCGGGTCTGGTAG MEVLRTRVGGSGLLVAVAAVVILLAAVPEVSATRWTVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYENCISDHPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCFGGMKLAIHVEHLPPPPSSSPLNEKSSALRSTNTGHTPFVLTAVFAIAAVLEVFTRVW*
BLAST of Csa3G824220 vs. Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 6.9e-50 Identity = 91/168 (54.17%), Postives = 119/168 (70.83%), Query Frame = 1
BLAST of Csa3G824220 vs. Swiss-Prot
Match: BCB3_ARATH (Uclacyanin-3 OS=Arabidopsis thaliana GN=UCC3 PE=2 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 7.2e-15 Identity = 55/145 (37.93%), Postives = 72/145 (49.66%), Query Frame = 1
BLAST of Csa3G824220 vs. Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.0e-12 Identity = 52/154 (33.77%), Postives = 73/154 (47.40%), Query Frame = 1
BLAST of Csa3G824220 vs. Swiss-Prot
Match: ENL2_ARATH (Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.9e-10 Identity = 43/126 (34.13%), Postives = 60/126 (47.62%), Query Frame = 1
BLAST of Csa3G824220 vs. Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 7.7e-09 Identity = 41/113 (36.28%), Postives = 58/113 (51.33%), Query Frame = 1
BLAST of Csa3G824220 vs. TrEMBL
Match: A0A0A0LC11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1) HSP 1 Score: 375.2 bits (962), Expect = 4.6e-101 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1
BLAST of Csa3G824220 vs. TrEMBL
Match: W9QQU4_9ROSA (Lamin-like protein OS=Morus notabilis GN=L484_020958 PE=4 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 5.8e-64 Identity = 128/183 (69.95%), Postives = 142/183 (77.60%), Query Frame = 1
BLAST of Csa3G824220 vs. TrEMBL
Match: A9PAA9_POPTR (Plastocyanin-like domain-containing family protein OS=Populus trichocarpa GN=POPTR_0017s12460g PE=2 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 2.9e-63 Identity = 117/171 (68.42%), Postives = 140/171 (81.87%), Query Frame = 1
BLAST of Csa3G824220 vs. TrEMBL
Match: B9T3T7_RICCO (Blue copper protein, putative OS=Ricinus communis GN=RCOM_0169200 PE=4 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 6.4e-63 Identity = 121/176 (68.75%), Postives = 139/176 (78.98%), Query Frame = 1
BLAST of Csa3G824220 vs. TrEMBL
Match: A0A067JTG9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19891 PE=4 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 8.4e-63 Identity = 117/169 (69.23%), Postives = 134/169 (79.29%), Query Frame = 1
BLAST of Csa3G824220 vs. TAIR10
Match: AT5G15350.1 (AT5G15350.1 early nodulin-like protein 17) HSP 1 Score: 198.4 bits (503), Expect = 3.9e-51 Identity = 91/168 (54.17%), Postives = 119/168 (70.83%), Query Frame = 1
BLAST of Csa3G824220 vs. TAIR10
Match: AT3G01070.1 (AT3G01070.1 early nodulin-like protein 16) HSP 1 Score: 174.9 bits (442), Expect = 4.6e-44 Identity = 89/160 (55.62%), Postives = 112/160 (70.00%), Query Frame = 1
BLAST of Csa3G824220 vs. TAIR10
Match: AT4G12880.1 (AT4G12880.1 early nodulin-like protein 19) HSP 1 Score: 159.5 bits (402), Expect = 2.0e-39 Identity = 73/136 (53.68%), Postives = 94/136 (69.12%), Query Frame = 1
BLAST of Csa3G824220 vs. TAIR10
Match: AT2G27035.1 (AT2G27035.1 early nodulin-like protein 20) HSP 1 Score: 122.9 bits (307), Expect = 2.1e-28 Identity = 71/167 (42.51%), Postives = 96/167 (57.49%), Query Frame = 1
BLAST of Csa3G824220 vs. TAIR10
Match: AT3G60280.1 (AT3G60280.1 uclacyanin 3) HSP 1 Score: 82.0 bits (201), Expect = 4.0e-16 Identity = 55/145 (37.93%), Postives = 72/145 (49.66%), Query Frame = 1
BLAST of Csa3G824220 vs. NCBI nr
Match: gi|449437808|ref|XP_004136682.1| (PREDICTED: lamin-like protein [Cucumis sativus]) HSP 1 Score: 375.2 bits (962), Expect = 6.5e-101 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1
BLAST of Csa3G824220 vs. NCBI nr
Match: gi|659085323|ref|XP_008443359.1| (PREDICTED: lamin-like protein [Cucumis melo]) HSP 1 Score: 352.1 bits (902), Expect = 5.9e-94 Identity = 167/180 (92.78%), Postives = 174/180 (96.67%), Query Frame = 1
BLAST of Csa3G824220 vs. NCBI nr
Match: gi|1000939959|ref|XP_015583134.1| (PREDICTED: lamin-like protein [Ricinus communis]) HSP 1 Score: 258.1 bits (658), Expect = 1.2e-65 Identity = 122/169 (72.19%), Postives = 140/169 (82.84%), Query Frame = 1
BLAST of Csa3G824220 vs. NCBI nr
Match: gi|703073526|ref|XP_010089568.1| (Lamin-like protein [Morus notabilis]) HSP 1 Score: 251.9 bits (642), Expect = 8.4e-64 Identity = 128/183 (69.95%), Postives = 142/183 (77.60%), Query Frame = 1
BLAST of Csa3G824220 vs. NCBI nr
Match: gi|224141443|ref|XP_002324082.1| (plastocyanin-like domain-containing family protein [Populus trichocarpa]) HSP 1 Score: 249.6 bits (636), Expect = 4.1e-63 Identity = 117/171 (68.42%), Postives = 140/171 (81.87%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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