CU121043 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU121043
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 32505618 .. 32505876 (+)
Sequence length264
The following sequences are available for this feature:

transcribed_cluster sequence

CTAGCAACCAAACAGAACAAAAAAACTTCAAGCTAAAGGTTTAAAACCCCGGCAAAATCCAACAAGACCCCAAAAACAAACTAAAGAGGCTGAAAATCCACATAAGATCTGAAAATCAGCAATAACTCTAAACACCATTCACAGATCTATAGATAGAGGTGCTTACAGAGCCAATCATCATAATAGAAGTGCTTTCCCTGAGCCCAGGTAGTATAGTTCACATTAGTATTCCAACCCATGTTGCCACCGACAGTCCCCCGGCCG
BLAST of CU121043 vs. Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-06
Identity = 21/29 (72.41%), Postives = 20/29 (68.97%), Query Frame = -2

Query: 168 TVGGNMGWNTNVNYTTWAQGKHFYYDDWL 227
           TVG N  WN N+NYT WAQGKHFY  DWL
Sbjct: 30  TVGENKFWNPNINYTIWAQGKHFYLGDWL 58

Query: 228 255
           
Sbjct: 90  58

BLAST of CU121043 vs. TrEMBL
Match: A0A0A0LC11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = -2

Query: 168 RGTVGGNMGWNTNVNYTTWAQGKHFYYDDWL 227
           R TVGGNMGWNTNVNYTTWAQGKHFYYDDWL
Sbjct: 34  RWTVGGNMGWNTNVNYTTWAQGKHFYYDDWL 64

Query: 228 261
           
Sbjct: 94  64

BLAST of CU121043 vs. TrEMBL
Match: W9QQU4_9ROSA (Lamin-like protein OS=Morus notabilis GN=L484_020958 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.3e-08
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = -2

Query: 168 RGTVGGNMGWNTNVNYTTWAQGKHFYYDDWL 227
           R TVGGN GW TNVNYT WAQGKHFY DDWL
Sbjct: 37  RYTVGGNQGWTTNVNYTIWAQGKHFYKDDWL 67

Query: 228 261
           
Sbjct: 97  67

BLAST of CU121043 vs. TrEMBL
Match: Q2HW94_MEDTR (Blue (Type 1) copper domain OS=Medicago truncatula GN=MTR_6g013420 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = -2

Query: 168 RGTVGGNMGWNTNVNYTTWAQGKHFYYDDWL 227
           R  VGG MGWNTN NYTTWA+GKHFY  DWL
Sbjct: 37  RFMVGGRMGWNTNFNYTTWAKGKHFYNGDWL 67

Query: 228 261
           
Sbjct: 97  67

BLAST of CU121043 vs. TrEMBL
Match: A9PAA9_POPTR (Plastocyanin-like domain-containing family protein OS=Populus trichocarpa GN=POPTR_0017s12460g PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = -2

Query: 168 RGTVGGNMGWNTNVNYTTWAQGKHFYYDDWL 227
           R TVG NMGW +NVNYT WAQGKHFY  DWL
Sbjct: 33  RWTVGSNMGWTSNVNYTIWAQGKHFYNGDWL 63

Query: 228 261
           
Sbjct: 93  63

BLAST of CU121043 vs. TrEMBL
Match: B9T3T7_RICCO (Blue copper protein, putative OS=Ricinus communis GN=RCOM_0169200 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = -2

Query: 168 RGTVGGNMGWNTNVNYTTWAQGKHFYYDDWL 227
           R TVG NMGWNTNVNYT WA+ KHFY  DWL
Sbjct: 33  RWTVGANMGWNTNVNYTIWAKDKHFYNGDWL 63

Query: 228 261
           
Sbjct: 93  63

BLAST of CU121043 vs. NCBI nr
Match: gi|449437808|ref|XP_004136682.1| (PREDICTED: lamin-like protein [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 5.7e-10
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = -2

Query: 168 RGTVGGNMGWNTNVNYTTWAQGKHFYYDDWL 227
           R TVGGNMGWNTNVNYTTWAQGKHFYYDDWL
Sbjct: 34  RWTVGGNMGWNTNVNYTTWAQGKHFYYDDWL 64

Query: 228 261
           
Sbjct: 94  64

BLAST of CU121043 vs. NCBI nr
Match: gi|659085323|ref|XP_008443359.1| (PREDICTED: lamin-like protein [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 8.3e-09
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = -2

Query: 168 RGTVGGNMGWNTNVNYTTWAQGKHFYYDDWL 227
           R TVGGNMGW TNVNY+TWAQGKHFYYDDWL
Sbjct: 35  RWTVGGNMGWTTNVNYSTWAQGKHFYYDDWL 65

Query: 228 261
           
Sbjct: 95  65

BLAST of CU121043 vs. NCBI nr
Match: gi|703073526|ref|XP_010089568.1| (Lamin-like protein [Morus notabilis])

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-07
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = -2

Query: 168 RGTVGGNMGWNTNVNYTTWAQGKHFYYDDWL 227
           R TVGGN GW TNVNYT WAQGKHFY DDWL
Sbjct: 37  RYTVGGNQGWTTNVNYTIWAQGKHFYKDDWL 67

Query: 228 261
           
Sbjct: 97  67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LAML_ARATH1.0e-0672.41Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LC11_CUCSA6.2e-1196.77Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1[more]
W9QQU4_9ROSA8.3e-0883.87Lamin-like protein OS=Morus notabilis GN=L484_020958 PE=4 SV=1[more]
Q2HW94_MEDTR1.6e-0677.42Blue (Type 1) copper domain OS=Medicago truncatula GN=MTR_6g013420 PE=2 SV=1[more]
A9PAA9_POPTR1.6e-0677.42Plastocyanin-like domain-containing family protein OS=Populus trichocarpa GN=POP... [more]
B9T3T7_RICCO2.1e-0677.42Blue copper protein, putative OS=Ricinus communis GN=RCOM_0169200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449437808|ref|XP_004136682.1|5.7e-1096.77PREDICTED: lamin-like protein [Cucumis sativus][more]
gi|659085323|ref|XP_008443359.1|8.3e-0990.32PREDICTED: lamin-like protein [Cucumis melo][more]
gi|703073526|ref|XP_010089568.1|7.7e-0783.87Lamin-like protein [Morus notabilis][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G824220Csa3G824220gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02MT40DFKNP3UI02MT40DEST
H0064535H0064535EST