CU121413 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU121413
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Early nodulin-like protein 17
Location	Chr3 : 32504741 .. 32504873 (-)
Sequence length	187

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCTCCGTATCCACCACCACCTCCTCCGTATCCACCACCACCTCCGCCTCCGTATCCTCCACAATTTCACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGGCCTTATTACTTCATAAGTGGAAGAGGCTTTTGCTTTGGGGGCATGAAGCTTGCTATCCATGTCGAACACCTACCT

Library


Library category	ESTs
fruit (8DPP) library	2

Homology

[Close]

BLAST of CU121413 vs. Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-08
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 2


Query: 62  NFTTGAGRDVVHLNVTRPYYFISGRGFCFGGMKLAIHVEHLP 121
           N+T GAGRD+V LN T+ YY + G+G C+GGMKL++ VE LP
Sbjct: 88  NWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLP 129

Query: 122  181
           
Sbjct: 148  129

Query: 182  188
           
Sbjct: 208  129

[Close]

BLAST of CU121413 vs. TrEMBL
Match: A0A0A0LC11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-16
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2


Query: 62  NFTTGAGRDVVHLNVTRPYYFISGRGFCFGGMKLAIHVEHLP 121
           NFTTGAGRDVVHLNVTRPYYFISG+GFCFGGMKLAIHVEHLP
Sbjct: 94  NFTTGAGRDVVHLNVTRPYYFISGKGFCFGGMKLAIHVEHLP 135

Query: 122  181
           
Sbjct: 154  135

Query: 182  188
           
Sbjct: 214  135

[Close]

BLAST of CU121413 vs. TrEMBL
Match: Q2HW94_MEDTR (Blue (Type 1) copper domain OS=Medicago truncatula GN=MTR_6g013420 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.0e-13
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 2


Query: 62  NFTTGAGRDVVHLNVTRPYYFISGRGFCFGGMKLAIHVEHLP 121
           N+TTGAGRDVV LNVTR YYFISG+GFCFGGMKLA+HVE+LP
Sbjct: 97  NWTTGAGRDVVPLNVTRHYYFISGKGFCFGGMKLAVHVENLP 138

Query: 122  181
           
Sbjct: 157  138

Query: 182  188
           
Sbjct: 217  138

[Close]

BLAST of CU121413 vs. TrEMBL
Match: A0A067JTG9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19891 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.2e-12
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 2


Query: 62  NFTTGAGRDVVHLNVTRPYYFISGRGFCFGGMKLAIHVEHLP 121
           N+TTGAGRDVV LNVTR YYFISG+GFCFGGMKLA+HVE+ P
Sbjct: 95  NWTTGAGRDVVPLNVTRNYYFISGKGFCFGGMKLAVHVENPP 136

Query: 122  181
           
Sbjct: 155  136

Query: 182  188
           
Sbjct: 215  136

[Close]

BLAST of CU121413 vs. TrEMBL
Match: B9T3T7_RICCO (Blue copper protein, putative OS=Ricinus communis GN=RCOM_0169200 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.8e-12
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 2


Query: 62  NFTTGAGRDVVHLNVTRPYYFISGRGFCFGGMKLAIHVEHLP 121
           N+TTGAGRDVV LNVTR YYFISG+GFCFGGMK+AIHVE+ P
Sbjct: 100 NWTTGAGRDVVPLNVTRNYYFISGKGFCFGGMKVAIHVENPP 141

Query: 122  181
           
Sbjct: 160  141

Query: 182  188
           
Sbjct: 220  141

[Close]

BLAST of CU121413 vs. TrEMBL
Match: A0A022RWL9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014978mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-11
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 2


Query: 62  NFTTGAGRDVVHLNVTRPYYFISGRGFCFGGMKLAIHVEHLP 121
           N+TTGAGRDVV LNVTR +YFISG+GFCFGGMKLAIHVE+ P
Sbjct: 89  NWTTGAGRDVVPLNVTRNFYFISGKGFCFGGMKLAIHVENPP 130

Query: 122  181
           
Sbjct: 149  130

Query: 182  188
           
Sbjct: 209  130

[Close]

BLAST of CU121413 vs. NCBI nr
Match: gi|449437808|ref|XP_004136682.1| (PREDICTED: lamin-like protein [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-17
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2


Query: 62  NFTTGAGRDVVHLNVTRPYYFISGRGFCFGGMKLAIHVEHLP 121
           NFTTGAGRDVVHLNVTRPYYFISG+GFCFGGMKLAIHVEHLP
Sbjct: 94  NFTTGAGRDVVHLNVTRPYYFISGKGFCFGGMKLAIHVEHLP 135

Query: 122  181
           
Sbjct: 154  135

Query: 182  188
           
Sbjct: 214  135

[Close]

BLAST of CU121413 vs. NCBI nr
Match: gi|659085323|ref|XP_008443359.1| (PREDICTED: lamin-like protein [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-16
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 2


Query: 62  NFTTGAGRDVVHLNVTRPYYFISGRGFCFGGMKLAIHVEHLP 121
           NFTTGAGRDVVHLNVTRPYYFISG+GFC+GGMKLAIHVEHLP
Sbjct: 95  NFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVEHLP 136

Query: 122  181
           
Sbjct: 155  136

Query: 182  188
           
Sbjct: 215  136

[Close]

BLAST of CU121413 vs. NCBI nr
Match: gi|357496611|ref|XP_003618594.1| (blue copper-like protein [Medicago truncatula])

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-13
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 2


Query: 62  NFTTGAGRDVVHLNVTRPYYFISGRGFCFGGMKLAIHVEHLP 121
           N+TTGAGRDVV LNVTR YYFISG+GFCFGGMKLA+HVE+LP
Sbjct: 97  NWTTGAGRDVVPLNVTRHYYFISGKGFCFGGMKLAVHVENLP 138

Query: 122  181
           
Sbjct: 157  138

Query: 182  188
           
Sbjct: 217  138

[Close]

BLAST of CU121413 vs. NCBI nr
Match: gi|1012261357|ref|XP_015946173.1| (PREDICTED: lamin-like protein [Arachis duranensis])

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-13
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 2


Query: 62  NFTTGAGRDVVHLNVTRPYYFISGRGFCFGGMKLAIHVEHLP 121
           N+TTGAGRDVV LNVTR YYFISG+GFCFGGMKLA+HVE+LP
Sbjct: 88  NWTTGAGRDVVPLNVTRNYYFISGKGFCFGGMKLAVHVENLP 129

Query: 122  181
           
Sbjct: 148  129

Query: 182  188
           
Sbjct: 208  129

[Close]

BLAST of CU121413 vs. NCBI nr
Match: gi|502091076|ref|XP_004489434.1| (PREDICTED: lamin-like protein [Cicer arietinum])

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-13
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 2


Query: 62  NFTTGAGRDVVHLNVTRPYYFISGRGFCFGGMKLAIHVEHLP 121
           N+TTGAGRDVV LNVTR YYFISG+GFC+GGMKLAIHVE+LP
Sbjct: 97  NWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAIHVENLP 138

Query: 122  181
           
Sbjct: 157  138

Query: 182  188
           
Sbjct: 217  138

The following BLAST results are available for this feature:

BLAST of CU121413 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LAML_ARATH	1.3e-08	59.52	Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1	[more]

BLAST of CU121413 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC11_CUCSA	1.6e-16	97.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1	[more]
Q2HW94_MEDTR	8.0e-13	85.71	Blue (Type 1) copper domain OS=Medicago truncatula GN=MTR_6g013420 PE=2 SV=1	[more]
A0A067JTG9_JATCU	5.2e-12	83.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19891 PE=4 SV=1	[more]
B9T3T7_RICCO	8.8e-12	83.33	Blue copper protein, putative OS=Ricinus communis GN=RCOM_0169200 PE=4 SV=1	[more]
A0A022RWL9_ERYGU	1.2e-11	83.33	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014978mg PE=4 SV=1	[more]

BLAST of CU121413 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437808\|ref\|XP_004136682.1\|	4.5e-17	97.62	PREDICTED: lamin-like protein [Cucumis sativus]	[more]
gi\|659085323\|ref\|XP_008443359.1\|	1.0e-16	95.24	PREDICTED: lamin-like protein [Cucumis melo]	[more]
gi\|357496611\|ref\|XP_003618594.1\|	2.3e-13	85.71	blue copper-like protein [Medicago truncatula]	[more]
gi\|1012261357\|ref\|XP_015946173.1\|	2.3e-13	85.71	PREDICTED: lamin-like protein [Arachis duranensis]	[more]
gi\|502091076\|ref\|XP_004489434.1\|	3.9e-13	85.71	PREDICTED: lamin-like protein [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G824220	Csa3G824220	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02NJM5S	FKNP3UI02NJM5S	EST
FKNP3UI02NJTHE	FKNP3UI02NJTHE	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..34 score: