Csa3G271370 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G271370
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Probable 30S ribosomal protein PSRP-3; contains IPR006924 (Ribosomal protein PSRP-3/Ycf65)
Location	Chr3 : 16448716 .. 16451356 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATTGCACCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCCATCTCCGAACGCACTCTCTATGATGTTATCCATGGCAGTTCAACTTCAGCCCAATGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTTCAAAACCGTTCAAACTTCCTTTTGCTGTGAGGCAAAGAACCACCGCTTCTTCCTGCATTCCCAACTTCCATACTGTTTTTGGCTTGCAATTGAGGCGCCAGAACTTCAGAACTCAAGAAATCTCTGCTTCTGCTGCGCCCATTGAAGCTGTCGAAGCTGCTTCAGAATTGCTTGTTGCTGATGATTCCGACTCCGTCTCTTCTCCTGTTAAGGAGGTCTCTCTCTCTCTCTTCCTCCCTTTCTATCTCGTCTGATTGCTCCGTTTAGTTTCGTTCGTTTTCAGCAAGTTGAAAAATGAATCCTTGTTTTTTCTGCTGGATGGAGATCGTCTGATATTTGGGGGAGAGCTACCGAAAGTTTGGTAAACAAACAGTACTGTCGTTTCTTAGTTAGTTGAGAGGGGCGGATTTATTGGTGAATTTGGTTACTTGAAAGCTCGTTCTATTTCTAAATTTTTTTTGTTTCTTTTTTTAAAATGTTCTTGCTTTCATTTCAGTTTTTGGTTCTTTTCAAAGAAACTGCTTGAATTCATTGAGATCCTATAGCTTACTGTGGCTATGTATTGTACATTGTTTGTTTGATCGAGTAGTGTTGTTTTCGCTATGAACACATGGTAGAAATTCTGGTATAACGAATTACTAATACTTTGTGAGTAACTTGGAAGATAGGTTCTAACAAGAATGTTGATGTTGATTTTCATGGATCCCTAAAAGTTTATAATTTGAAATGAACGTATTGAAGAAGATCAATTCTCACACAGTAGTTAAATGATTGACGCAGCATTAACATTTAATTGTTAATTTTATTAATTCCAAATTGAAGTTTGAATAAGTAATGAATTAATACTCCTTGTTGGCTGAATTGCTATTTTCTCTAGGTTTCTGGTTATATCTGTGTTATTGTGATTTGAATTGGGACGTGGTTGGTTTTTTGAATGCTCATTTTATTATTGCCTTGCCTTGAGCATTTATTTAGGTTTGGTTTTGGTTTTTTGTTGTTAGGTTTGAGCACTGCTTTAATTGTTAAACTTTATCACTTTGTGGCTGGATTTGGATGTCTCCAAGTTTTGGATATTGTATTTGGAATTTGATTTTTTTAGCTAAATTTAAGTGATATTTTGCTGCTTTTCGAACAATACTCTAGTTTCGTTTTGTGAGATTTCAATTTCATCAATATTTCAGTTTAAATTTCAATTCGATAAAGTTATAACTTAGCCTCTTAGGCTAGTATATGTAGTTCTTTTCTTTTCTTTTCCCCTCCCTTTGTCCATACCTTATGGGGATGCTTTTTGCTTGCTGATTAACCTAGGTTTAGTTTGGATTTGCGTAATCTACCCCTAGAATTTGTAAAGGAATGAGTTGTAGAAATCTTGGTATGTGTAAAATATGTTTTGTTTAAGTTCAACTATAAACCTGTGGTTTCATTTTGTTATATGTATGTAACCTTTGTTGTTGTAGCTTGTGGAATTAGCTAACTGTTGACCTGTGGGATAAGAATCGTAATTTGGATAAATAAGCTCATGTACTAAAGTTTAGTCATACCTCTTTGCTATCTTAACATTCAGCTACACAAATCCAACTTGTGTGCTAATCAAGTCCTAAAGATATCTTTTATGTTACACTAAATAATTTCTAGAACAACTCTAAGCATATGTAGTTTCTTAACAAGTATTTACTATAAACAAACTCATACTTTCCCCACTTGGCTTTACTTTAACCATATTAGGAGTCTTAGAGGTAATCTCCCTCCCTTTGATAAGATGATATCAACATCAAATACTGAAACGGACTGTACAACAGTGAAAATCTTTTGATTCTCATTATTTTTGTGAAACACAATTAAACAAGTACTGGTATTTTGATTTTATAGTTTCCTTTTGCTTTTACAAATGAAAACTTGAGCAAAATAGATTTATCAGGAAGCCCTTCTCTGGCAAATTATACATTTTGACGATTCATTTTTTAATGTTATAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTTATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCGTACTACTTTTGGCCTCGGAAAGATGCATGGGAAGAACTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATTCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAAGCTCCAATGTAAAAAGTTTCAAATTTTTTTGATAGTGGTCTTAGATTGTGACTATTCTTGAATCGTACGGCTGTTCAGATGTCCTTTTTCGTATATTCTGAAGTAATTTTATAATTTATAAATGACTCATCTTTTGTTGTATATTATGTTGGTTGTGTAACCCATCTACAGTTCACATTTTCCGTTGAAAGTTTTGTTCATATTCAATATGAAAACCTATTATTTTATGCATTTAGCTGGG

mRNA sequence

ATGCATATTGCACCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCCATCTCCGAACGCACTCTCTATGATGTTATCCATGGCAGTTCAACTTCAGCCCAATGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTTCAAAACCGTTCAAACTTCCTTTTGCTGTGAGGCAAAGAACCACCGCTTCTTCCTGCATTCCCAACTTCCATACTGTTTTTGGCTTGCAATTGAGGCGCCAGAACTTCAGAACTCAAGAAATCTCTGCTTCTGCTGCGCCCATTGAAGCTGTCGAAGCTGCTTCAGAATTGCTTGTTGCTGATGATTCCGACTCCGTCTCTTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTTATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCGTACTACTTTTGGCCTCGGAAAGATGCATGGGAAGAACTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATTCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAA

Coding sequence (CDS)

ATGCATATTGCACCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCCATCTCCGAACGCACTCTCTATGATGTTATCCATGGCAGTTCAACTTCAGCCCAATGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTTCAAAACCGTTCAAACTTCCTTTTGCTGTGAGGCAAAGAACCACCGCTTCTTCCTGCATTCCCAACTTCCATACTGTTTTTGGCTTGCAATTGAGGCGCCAGAACTTCAGAACTCAAGAAATCTCTGCTTCTGCTGCGCCCATTGAAGCTGTCGAAGCTGCTTCAGAATTGCTTGTTGCTGATGATTCCGACTCCGTCTCTTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTTATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCGTACTACTTTTGGCCTCGGAAAGATGCATGGGAAGAACTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATTCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAA

Protein sequence

MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA*

Homology

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BLAST of Csa3G271370 vs. Swiss-Prot
Match: RRP3_SPIOL (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.7e-51
Identity = 116/192 (60.42%), Postives = 131/192 (68.23%), Query Frame = 1


Query: 23  MLSMAVQLQPNVNFCFNTSNFTAQTAS-KPFKLPFAVRQRTTASSCIPNFHTVFGLQLRR 82
           MLSMAVQ  PN+N     S + +   S KPFK P     +   SS  P+F      QL++
Sbjct: 1   MLSMAVQ--PNINAIAKPSIYQSPKLSLKPFKTPAFANPKPFFSS--PSFS-----QLKK 60

Query: 83  QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 142
           +N     +  +   I  V      +  DD   V+   KEKL V+VKPM+KPRLVLKFIWM
Sbjct: 61  KN--NWSLFVAPETISDVAIMGNEVDIDDDLLVN---KEKLKVLVKPMDKPRLVLKFIWM 120

Query: 143 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 202
           EKNIG+ALDQ IPGHGT+PLSPYYFWPRKDAWEELKVLLE+KPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDI 178

Query: 203 INLWQQGGGNLA 214
           INLWQQ GGNLA
Sbjct: 181 INLWQQSGGNLA 178

[Close]

BLAST of Csa3G271370 vs. Swiss-Prot
Match: RRP32_ARATH (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-40
Identity = 89/189 (47.09%), Postives = 118/189 (62.43%), Query Frame = 1


Query: 26  MAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRRQNFR 85
           MAVQ   + +F F T++ + + +SKP      +   + ++   P+           Q   
Sbjct: 1   MAVQANQSASFGFRTASPSQKLSSKP------IAHISLSTKLKPSSRPSLSCSTWNQGQI 60

Query: 86  TQEISASAAPIEAVEAASELLVADDSDSVSSPV-KEKLGVVVKPMEKPRLVLKFIWMEKN 145
               S     I A   ++     +  +S S P+ K+K+ V+VKP+EKP++VLKF+WM+K+
Sbjct: 61  PARHSCINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKD 120

Query: 146 IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 205
           IG+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQATDIINL
Sbjct: 121 IGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINL 180

Query: 206 WQQGGGNLA 214
           WQ  GG+L+
Sbjct: 181 WQSSGGDLS 183

[Close]

BLAST of Csa3G271370 vs. Swiss-Prot
Match: RRP31_ARATH (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=At1g68590 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.7e-40
Identity = 80/114 (70.18%), Postives = 89/114 (78.07%), Query Frame = 1


Query: 101 AASELLVADDSDSV--SSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGT 160
           AA E L A+    +  S    ++   VVKP EK R+VLKF+WMEKNIG+ LDQ +PGHGT
Sbjct: 50  AAPETLTAETVTGIDTSDNTPQQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGT 109

Query: 161 IPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 213
           IPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 110 IPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of Csa3G271370 vs. Swiss-Prot
Match: RRP3_HORVU (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.9e-39
Identity = 97/178 (54.49%), Postives = 112/178 (62.92%), Query Frame = 1


Query: 44  TAQTASKP-FKLPFAVRQRTTASSCIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAA 103
           T   AS+P   LP   R  T +SS      ++  L+ RR   R+     +AA   AVEA 
Sbjct: 11  TPALASRPRVSLP---RPSTPSSSS-----SLVHLKSRRPPLRSLRSLTAAAAAAAVEAG 70

Query: 104 SELL-VADDS------DSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPG 163
                + DD       D+ +    E+  V V   + P LVLKFIWMEKNIGIALDQM+PG
Sbjct: 71  EPYFGLGDDEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPG 130

Query: 164 HGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 214
            G+IPLSPYYFWPRKDAWEEL+  LE K WISQKQMIILLNQATDIINLWQQGGG+L+
Sbjct: 131 VGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLS 180

[Close]

BLAST of Csa3G271370 vs. Swiss-Prot
Match: RRP3_PYRYE (Probable 30S ribosomal protein 3, chloroplastic OS=Pyropia yezoensis GN=ycf65 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-21
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 133 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 192
           +  LK +W+E NI IA+DQ++ G+GT PL+ Y+FWPR DAWEELK  LESKPWI+++  I
Sbjct: 8   KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 67

Query: 193 ILLNQATDIINLWQQGG 210
            LLN+ T++IN WQ+ G
Sbjct: 68  ELLNKTTEVINYWQEEG 83

[Close]

BLAST of Csa3G271370 vs. TrEMBL
Match: A0A0A0L9T8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271370 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 2.7e-116
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1


Query: 1   MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ 60
           MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ
Sbjct: 1   MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ 60

Query: 61  RTTASSCIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE 120
           RTTASSCIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE
Sbjct: 61  RTTASSCIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE 120

Query: 121 KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL 180
           KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL
Sbjct: 121 KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL 180

Query: 181 ESKPWISQKQMIILLNQATDIINLWQQGGGNLA 214
           ESKPWISQKQMIILLNQATDIINLWQQGGGNLA
Sbjct: 181 ESKPWISQKQMIILLNQATDIINLWQQGGGNLA 213

[Close]

BLAST of Csa3G271370 vs. TrEMBL
Match: A0A059AE97_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01498 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.3e-51
Identity = 121/207 (58.45%), Postives = 138/207 (66.67%), Query Frame = 1


Query: 7   SSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASS 66
           +S + SF         ML+MAV+ + +           +   SKP +  F   ++T   +
Sbjct: 34  TSLAQSFDTVSIPSKTMLTMAVEPKVSAALVQRPPFLCSDVVSKPSRASFFAARKTGRCA 93

Query: 67  CIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVV 126
                    GL++ R   R   ISA +A  EAV AA E   AD S  V    KEKLGVVV
Sbjct: 94  ---------GLKVGRCGSRGIRISAVSAAAEAV-AAEETPAADSSPEVVQD-KEKLGVVV 153

Query: 127 KPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWI 186
           KPM+KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWI
Sbjct: 154 KPMDKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWI 213

Query: 187 SQKQMIILLNQATDIINLWQQGGGNLA 214
           SQKQMIILLNQATDIINLWQQ GG+L+
Sbjct: 214 SQKQMIILLNQATDIINLWQQSGGDLS 229

[Close]

BLAST of Csa3G271370 vs. TrEMBL
Match: M5XDM2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011873mg PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.7e-51
Identity = 122/199 (61.31%), Postives = 142/199 (71.36%), Query Frame = 1


Query: 23  MLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIP---NF---HTVFG 82
           MLSM + ++   N   N S    +   +  KL   V     A +  P   NF   H++  
Sbjct: 1   MLSMGLGIECQANL--NASVLRQKLPQQKHKL-LLVNNNQRALNFKPRTSNFSVSHSLSE 60

Query: 83  LQLR-RQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPV-KEKLGVVVKPMEKPRL 142
           L+LR  Q  R  ++SA+A  + A E A+    ADD+ +  +P+ KEKLGVVVKP+EKPRL
Sbjct: 61  LKLRLTQTTRNVKLSAAAESLVAEETAA----ADDNLTTETPLEKEKLGVVVKPIEKPRL 120

Query: 143 VLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIIL 202
           VLKFIWMEKNIGIALDQMIPGHG+IPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIIL
Sbjct: 121 VLKFIWMEKNIGIALDQMIPGHGSIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIIL 180

Query: 203 LNQATDIINLWQQGGGNLA 214
           LNQATDIINLWQQ GGNLA
Sbjct: 181 LNQATDIINLWQQSGGNLA 192

[Close]

BLAST of Csa3G271370 vs. TrEMBL
Match: F6HSE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g03060 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.7e-49
Identity = 111/188 (59.04%), Postives = 125/188 (66.49%), Query Frame = 1


Query: 26  MAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRRQNFR 85
           MAVQ  PN              A K +  P +  +         N  +++  +    N R
Sbjct: 1   MAVQPNPNA-------------ALKSYTFPMSSNRNHRLMFKSSNALSLYSTRSASTNLR 60

Query: 86  TQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNI 145
              + AS AP+ AV  + +     +S S S    EKLGVVVKPMEKPRLVLKFIWMEKNI
Sbjct: 61  ---LRASPAPVVAVAVSEQSSAPQESLSASPLDVEKLGVVVKPMEKPRLVLKFIWMEKNI 120

Query: 146 GIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLW 205
           G+ALDQ IPGHGTIPLSPYYFWPRKDAWEE+KVLLESKPWISQKQMIILLNQATDIINLW
Sbjct: 121 GVALDQAIPGHGTIPLSPYYFWPRKDAWEEIKVLLESKPWISQKQMIILLNQATDIINLW 172

Query: 206 QQGGGNLA 214
           QQ GGNLA
Sbjct: 181 QQSGGNLA 172

[Close]

BLAST of Csa3G271370 vs. TrEMBL
Match: A0A0J8CY65_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026700 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.3e-49
Identity = 120/196 (61.22%), Postives = 134/196 (68.37%), Query Frame = 1


Query: 23  MLSMAVQLQPNVNFCFNTSNFTAQTAS-KPFKLPFAVRQRTTASSCIPNFHTVFGLQLRR 82
           M SMAVQ  PN+N     S + +   S KP K P  V  +  +             QL++
Sbjct: 1   MFSMAVQ--PNINAIVKPSTYPSPKLSLKPLKAPTFVNPKPFS-------------QLKK 60

Query: 83  QNFRTQEISASAAP-----IEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVL 142
           +N+     S SAAP     I  VE  +EL V DD   V+   KEKL VVV PM+KPRLVL
Sbjct: 61  KNW---SFSLSAAPESISDISVVE--NELDVDDDLPVVT---KEKLQVVVNPMDKPRLVL 120

Query: 143 KFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLN 202
           KFIWMEKNIG+AL+Q IPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLN
Sbjct: 121 KFIWMEKNIGLALNQTIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLN 173

Query: 203 QATDIINLWQQGGGNL 213
           QATDIINLWQQ GGNL
Sbjct: 181 QATDIINLWQQSGGNL 173

[Close]

BLAST of Csa3G271370 vs. TAIR10
Match: AT5G15760.1 (AT5G15760.1 Ribosomal protein PSRP-3/Ycf65)

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-41
Identity = 89/189 (47.09%), Postives = 118/189 (62.43%), Query Frame = 1


Query: 26  MAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRRQNFR 85
           MAVQ   + +F F T++ + + +SKP      +   + ++   P+           Q   
Sbjct: 1   MAVQANQSASFGFRTASPSQKLSSKP------IAHISLSTKLKPSSRPSLSCSTWNQGQI 60

Query: 86  TQEISASAAPIEAVEAASELLVADDSDSVSSPV-KEKLGVVVKPMEKPRLVLKFIWMEKN 145
               S     I A   ++     +  +S S P+ K+K+ V+VKP+EKP++VLKF+WM+K+
Sbjct: 61  PARHSCINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKD 120

Query: 146 IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 205
           IG+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQATDIINL
Sbjct: 121 IGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINL 180

Query: 206 WQQGGGNLA 214
           WQ  GG+L+
Sbjct: 181 WQSSGGDLS 183

[Close]

BLAST of Csa3G271370 vs. TAIR10
Match: AT1G68590.1 (AT1G68590.1 Ribosomal protein PSRP-3/Ycf65)

HSP 1 Score: 165.2 bits (417), Expect = 4.3e-41
Identity = 80/114 (70.18%), Postives = 89/114 (78.07%), Query Frame = 1


Query: 101 AASELLVADDSDSV--SSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGT 160
           AA E L A+    +  S    ++   VVKP EK R+VLKF+WMEKNIG+ LDQ +PGHGT
Sbjct: 50  AAPETLTAETVTGIDTSDNTPQQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGT 109

Query: 161 IPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 213
           IPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 110 IPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of Csa3G271370 vs. NCBI nr
Match: gi|700202611|gb|KGN57744.1| (hypothetical protein Csa_3G271370 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 3.8e-116
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1


Query: 1   MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ 60
           MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ
Sbjct: 1   MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ 60

Query: 61  RTTASSCIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE 120
           RTTASSCIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE
Sbjct: 61  RTTASSCIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE 120

Query: 121 KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL 180
           KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL
Sbjct: 121 KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL 180

Query: 181 ESKPWISQKQMIILLNQATDIINLWQQGGGNLA 214
           ESKPWISQKQMIILLNQATDIINLWQQGGGNLA
Sbjct: 181 ESKPWISQKQMIILLNQATDIINLWQQGGGNLA 213

[Close]

BLAST of Csa3G271370 vs. NCBI nr
Match: gi|449455804|ref|XP_004145640.1| (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 386.7 bits (992), Expect = 2.6e-104
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


Query: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRR 81
           MMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRR
Sbjct: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRR 60

Query: 82  QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 141
           QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM
Sbjct: 61  QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 120

Query: 142 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 201
           EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 180

Query: 202 INLWQQGGGNLA 214
           INLWQQGGGNLA
Sbjct: 181 INLWQQGGGNLA 192

[Close]

BLAST of Csa3G271370 vs. NCBI nr
Match: gi|659123285|ref|XP_008461583.1| (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo])

HSP 1 Score: 364.0 bits (933), Expect = 1.8e-97
Identity = 180/192 (93.75%), Postives = 185/192 (96.35%), Query Frame = 1


Query: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRR 81
           MMLSMAVQLQPNV+FCFNTSNFTAQ ASKPF+LPFAV+QRTTASSCIPNFH+VFGL+LRR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPASKPFQLPFAVKQRTTASSCIPNFHSVFGLKLRR 60

Query: 82  QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 141
           QN RTQEISASA   EAVEAASE LV DDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM
Sbjct: 61  QNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 120

Query: 142 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 201
           EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 180

Query: 202 INLWQQGGGNLA 214
           INLWQQGGGNLA
Sbjct: 181 INLWQQGGGNLA 192

[Close]

BLAST of Csa3G271370 vs. NCBI nr
Match: gi|225452011|ref|XP_002283616.1| (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 211.1 bits (536), Expect = 1.9e-51
Identity = 115/192 (59.90%), Postives = 129/192 (67.19%), Query Frame = 1


Query: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRR 81
           MMLSMAVQ  PN              A K +  P +  +         N  +++  +   
Sbjct: 1   MMLSMAVQPNPNA-------------ALKSYTFPMSSNRNHRLMFKSSNALSLYSTRSAS 60

Query: 82  QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 141
            N R   + AS AP+ AV  + +     +S S S    EKLGVVVKPMEKPRLVLKFIWM
Sbjct: 61  TNLR---LRASPAPVVAVAVSEQSSAPQESLSASPLDVEKLGVVVKPMEKPRLVLKFIWM 120

Query: 142 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 201
           EKNIG+ALDQ IPGHGTIPLSPYYFWPRKDAWEE+KVLLESKPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGVALDQAIPGHGTIPLSPYYFWPRKDAWEEIKVLLESKPWISQKQMIILLNQATDI 176

Query: 202 INLWQQGGGNLA 214
           INLWQQ GGNLA
Sbjct: 181 INLWQQSGGNLA 176

[Close]

BLAST of Csa3G271370 vs. NCBI nr
Match: gi|629085702|gb|KCW52059.1| (hypothetical protein EUGRSUZ_J01498 [Eucalyptus grandis])

HSP 1 Score: 210.3 bits (534), Expect = 3.3e-51
Identity = 121/207 (58.45%), Postives = 138/207 (66.67%), Query Frame = 1


Query: 7   SSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASS 66
           +S + SF         ML+MAV+ + +           +   SKP +  F   ++T   +
Sbjct: 34  TSLAQSFDTVSIPSKTMLTMAVEPKVSAALVQRPPFLCSDVVSKPSRASFFAARKTGRCA 93

Query: 67  CIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVV 126
                    GL++ R   R   ISA +A  EAV AA E   AD S  V    KEKLGVVV
Sbjct: 94  ---------GLKVGRCGSRGIRISAVSAAAEAV-AAEETPAADSSPEVVQD-KEKLGVVV 153

Query: 127 KPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWI 186
           KPM+KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWI
Sbjct: 154 KPMDKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWI 213

Query: 187 SQKQMIILLNQATDIINLWQQGGGNLA 214
           SQKQMIILLNQATDIINLWQQ GG+L+
Sbjct: 214 SQKQMIILLNQATDIINLWQQSGGDLS 229

The following BLAST results are available for this feature:

BLAST of Csa3G271370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RRP3_SPIOL	5.7e-51	60.42	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1	[more]
RRP32_ARATH	2.6e-40	47.09	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=At5g15760 PE...	[more]
RRP31_ARATH	7.7e-40	70.18	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=At1g68590 PE...	[more]
RRP3_HORVU	2.9e-39	54.49	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare GN=PSRP3 PE=2 SV=1	[more]
RRP3_PYRYE	2.7e-21	57.14	Probable 30S ribosomal protein 3, chloroplastic OS=Pyropia yezoensis GN=ycf65 PE...	[more]

BLAST of Csa3G271370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9T8_CUCSA	2.7e-116	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271370 PE=4 SV=1	[more]
A0A059AE97_EUCGR	2.3e-51	58.45	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01498 PE=4 SV=1	[more]
M5XDM2_PRUPE	6.7e-51	61.31	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011873mg PE=4 SV=1	[more]
F6HSE3_VITVI	1.7e-49	59.04	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g03060 PE=4 SV=...	[more]
A0A0J8CY65_BETVU	6.3e-49	61.22	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026700 PE=4 S...	[more]

BLAST of Csa3G271370 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15760.1	1.5e-41	47.09	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.1	4.3e-41	70.18	Ribosomal protein PSRP-3/Ycf65	[more]

BLAST of Csa3G271370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202611\|gb\|KGN57744.1\|	3.8e-116	100.00	hypothetical protein Csa_3G271370 [Cucumis sativus]	[more]
gi\|449455804\|ref\|XP_004145640.1\|	2.6e-104	100.00	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis sativus]	[more]
gi\|659123285\|ref\|XP_008461583.1\|	1.8e-97	93.75	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo]	[more]
gi\|225452011\|ref\|XP_002283616.1\|	1.9e-51	59.90	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Vitis vinifera]	[more]
gi\|629085702\|gb\|KCW52059.1\|	3.3e-51	58.45	hypothetical protein EUGRSUZ_J01498 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006924	Ribosomal_PSRP3/Ycf65

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU106158	cucumber EST collection version 3.0	transcribed_cluster
CU117832	cucumber EST collection version 3.0	transcribed_cluster
CU128675	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G271370.1	Csa3G271370.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU106158	CU106158	transcribed_cluster
CU117832	CU117832	transcribed_cluster
CU128675	CU128675	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006924	Ribosomal protein PSRP-3/Ycf65	PRODOM	PD015453		coord: 133..208 score: 8.0
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 161..207 score: 1.6
None	No IPR available	PANTHER	PTHR35108	FAMILY NOT NAMED	coord: 11..213 score: 2.7
None	No IPR available	PANTHER	PTHR35108:SF1	30S RIBOSOMAL PROTEIN 3-1, CHLOROPLASTIC-RELATED	coord: 11..213 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G271370	MELO3C023788	Melon (DHL92) v3.5.1	cumeB161
Csa3G271370	ClCG05G011680	Watermelon (Charleston Gray)	cuwcgB229
Csa3G271370	MELO3C023788.2	Melon (DHL92) v3.6.1	cumedB228
Csa3G271370	Cla97C05G093730	Watermelon (97103) v2	cuwmbB213
Csa3G271370	Bhi01G001457	Wax gourd	cuwgoB271
Csa3G271370	CSPI03G20590	Wild cucumber (PI 183967)	cpicuB120
Csa3G271370	Cucsa.031480	Cucumber (Gy14) v1	cgycuB003
Csa3G271370	CmaCh01G003860	Cucurbita maxima (Rimu)	cmacuB455
Csa3G271370	CmoCh01G004080	Cucurbita moschata (Rifu)	cmocuB442
Csa3G271370	CsGy3G020280	Cucumber (Gy14) v2	cgybcuB109
Csa3G271370	Carg07476	Silver-seed gourd	carcuB0780

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G271370	Watermelon (Charleston Gray)	cuwcgB233
Csa3G271370	Watermelon (97103) v1	cuwmB247
Csa3G271370	Cucurbita pepo (Zucchini)	cpecuB547
Csa3G271370	Cucurbita pepo (Zucchini)	cpecuB600
Csa3G271370	Bottle gourd (USVL1VR-Ls)	culsiB212
Csa3G271370	Silver-seed gourd	carcuB0513
Csa3G271370	Watermelon (97103) v2	cuwmbB218
Csa3G271370	Cucurbita maxima (Rimu)	cmacuB242
Csa3G271370	Cucurbita moschata (Rifu)	cmocuB229