Cla97C05G093730 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G093730
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	30S ribosomal protein 3, chloroplastic-like
Location	Cla97Chr05 : 13458501 .. 13460895 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTCTGTTTCAATGCCTCCTACACTGCTCAAACCGCTACTTCAAAGCCACTCCAAGTTCCCTATTCTGTGAAGCAAAGAACCACCGCTGCTTCCTGCATTGCCAACTTGCATTCTCTTTCTGGGGTGAAATTGAGGCGCCAGAACTTCAGAACTCTCGAAATCTCTGCTGCGGCCGCTGAAGCTGTTGAAGCTGCTTCAGAATCGCTTGTTGCTGATGATTCCGACTCTGAGTCCTCTCCTGTTAAGGAGGTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTTTCTATTTCATGTGATTGCTCCGTTTAATTTGGTTAGTTTTTAGCAAGTTTAAATGAATGCTTGTTTTTTTTGGCTGGATGGGGATCGTCTGAAATTTGGTGGAGAGTAATGGAAAGTTTTGGGAAAAAAAAAAAAAAAACAATATTGTCGTTGCTTAGTTAATTGAGGGGCGGATTAATTGGTGAATTTGGTTCCTTGAAAGCTCGTTGTATTTGTAGAAACTGTGAAAAAAAGGTTATTGATTTTTTTTGTTCTTTATAAAGAAAGTACTTGAATTCTTTGAGATCCAATTGCTTACTGTGGCTATGTATTGTTCTTTATTTGTTTGATCGAGTAGTGTTATTTTCTCTATGAACAATGATAGAAATTCTGGTATAAACGAATTACTAATACTTTGTGAGTAACTTGGAAGGTATGTTCTAATGAGGATGTTGATGTTGATGTTGATTTTCATGAATCTCTAGAAGATTATGAAATTTGAAATGAACTTATGGAAGAAGATCAACTCTCACCTTAGATGATTGAGGCAACTTTAACCTTAAAGTGTTAATTTCATTAAATTGAGATTAAAATTTGAATAAATAATGAATTAACATCCCTTGTTGGCCGAGTTGCTATTTCCTCTAGGTTTCTGGTTATATCTATGTCTTCTTGTGATGCGAATTGGGATGTGACTAGTTTTTTGAATGCTCATTTTATTGTTTCCTTGCCTTGAGCATTTGTTTTTTTGTTTTGGTTGGGTTTTGATGTTTTATTGTTGGATTTGATATTGCTTTGGTTCTTAAACTTAGTGCCTGGATTTTGATGTCTCTTCACCAAGATTTGAATATAGTAGTTGGAACTTGATTTTGTTTTCTGAATTTTAAGTGATATTTTGCTGTTTTTGGGGCAATTTTCTAGTTTTATTTGTGAGATTTTAGTTTCATCAGTTATTTAAGTTTAGAATTCAATTTGATAAATTTATAGCTTTAAGGCTAATGTACATGTGGGGTTTTCTTTTCTTTTCTTTTTCCTTTCCCCTTCCTTTATCCATCCCTTAAGGGATGCTTTTTGCATGCTGTTTTGATAAACCTAGGTTTAGTTTGGATTTTTGTAATCTACGCTTAGAATTTGTAAGGAAATGAGTTGTAGAAATCTTGGTATTTGTAAAATGTGTTTTGTTCAAGTTCAACTATAAAAACGTGGTTTCATTTGTTTATATTTATGTAACCTGAGTTGTTGGCTTGTGGGATTAGCTAACTCTTAACCCGTGGAGAATTATAACTTGGATAAACAAGCTCACGTACTAAAGTTTAGGCATGGCTCTTTACTATCTTAACATTGAGCTACACAAATCTAACTTGTGCATTAAACATGTCCTAATGATATCTTTTATATTATGCTATACAGTATCTAGAACAACTCTAAGAATATGTATTTTTTGAAAAAATATTTACTATAAAAAAACTTATGTGGTAATCATATTTTCCCCACTTAGTTTTACTTTATCGATATTCAGATTCTTAGAAATAATCTCCCTCTCTTTGATATCAATATCAAATACTGAAACTGACAGTACAACAGTGAAAATCTCTTTGTTCTCATTATTTTTACGAAGCACAATAAAATCAGTACTTGTATTTTGATTTTATAGTTCCTTTTTCTTTTACAAATGAAATGTTGAGCAAAATAGATTAATAAGGAAGGCTTCCTCTGACAAATTAAACATTCACGTTATTTTTTATTTTTTATTTTTTATTATTATTATTATTATTATTTTTTTGTGTGTGTGCGTGTTATAGAAACTGGGAGTGGTTGTGAAACCAATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCGCTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGAAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAA

mRNA sequence

ATGATGCTATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTCTGTTTCAATGCCTCCTACACTGCTCAAACCGCTACTTCAAAGCCACTCCAAGTTCCCTATTCTGTGAAGCAAAGAACCACCGCTGCTTCCTGCATTGCCAACTTGCATTCTCTTTCTGGGGTGAAATTGAGGCGCCAGAACTTCAGAACTCTCGAAATCTCTGCTGCGGCCGCTGAAGCTGTTGAAGCTGCTTCAGAATCGCTTGTTGCTGATGATTCCGACTCTGAGTCCTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCAATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCGCTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGAAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAA

Coding sequence (CDS)

ATGATGCTATCCATGGCAGTTCAACTTCAGCCCAACGTTAATTTCTGTTTCAATGCCTCCTACACTGCTCAAACCGCTACTTCAAAGCCACTCCAAGTTCCCTATTCTGTGAAGCAAAGAACCACCGCTGCTTCCTGCATTGCCAACTTGCATTCTCTTTCTGGGGTGAAATTGAGGCGCCAGAACTTCAGAACTCTCGAAATCTCTGCTGCGGCCGCTGAAGCTGTTGAAGCTGCTTCAGAATCGCTTGTTGCTGATGATTCCGACTCTGAGTCCTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCAATGGAAAAGCCAAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGTATTGCGCTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCATACTACTTCTGGCCTCGAAAAGATGCATGGGAAGAGCTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAA

Protein sequence

MMLSMAVQLQPNVNFCFNASYTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLRRQNFRTLEISAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA

Homology

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BLAST of Cla97C05G093730 vs. NCBI nr
Match: XP_004145640.1 (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 4.6e-85
Identity = 169/193 (87.56%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLR 60
           MMLSMAVQLQPNVNFCFN S +TAQTA SKP ++P++V+QRTTA+SCI N H++ G++LR
Sbjct: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTASSCIPNFHTVFGLQLR 60

Query: 61  RQNFRTLEISAAAA--EAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQNFRT EISA+AA  EAVEAASE LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 191
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 192

[Close]

BLAST of Cla97C05G093730 vs. NCBI nr
Match: XP_008461583.1 (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo])

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 169/193 (87.56%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLR 60
           MMLSMAVQLQPNV+FCFN S +TAQ A SKP Q+P++VKQRTTA+SCI N HS+ G+KLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  RQNFRTLEISAAA--AEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQN RT EISA+A   EAVEAASESLV DDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 191
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 192

[Close]

BLAST of Cla97C05G093730 vs. NCBI nr
Match: XP_023522262.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.1 bits (788), Expect = 2.0e-80
Identity = 163/201 (81.09%), Postives = 180/201 (89.55%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTA--------ASCIANLH 60
           MMLSMAVQLQPNVNFC N S +++  ATSKP QVP+S+KQRTTA        +SCIA+++
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPYQVPFSLKQRTTALSSPSSSISSCIADVY 60

Query: 61  SLSGVKLRRQNFRTLEI--SAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKP 120
           S+SG+KLRRQ+FRTL++  SAAAA+AV+A SES VADDS SESSP KEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 121 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 181 ILLNQATDIINLWQQGGGNLA 191
           ILLNQATDIINLWQQGGG+LA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of Cla97C05G093730 vs. NCBI nr
Match: XP_022148098.1 (30S ribosomal protein 3, chloroplastic-like [Momordica charantia])

HSP 1 Score: 306.2 bits (783), Expect = 7.7e-80
Identity = 165/202 (81.68%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTA----------ASCIAN 60
           MMLSMAVQLQPN+NFC N S + AQ ATSKP QV + VKQRTTA          +SCIA+
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 61  LHSLSGVKLRRQNFRTLEIS--AAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPME 120
            H  SG K RRQNFR LE+S  AAA EAVEAASES V DDSDS SSPVKEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 190
           MIILLNQATDIINLWQQGGGNL
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 202

[Close]

BLAST of Cla97C05G093730 vs. NCBI nr
Match: XP_022997676.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 303.1 bits (775), Expect = 6.5e-79
Identity = 160/201 (79.60%), Postives = 179/201 (89.05%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTA--------ASCIANLH 60
           MMLSMAVQLQPNVNFC N S +++  ATSKP QVP+++KQRT A        +SCIA+++
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSSPSSSISSCIADVY 60

Query: 61  SLSGVKLRRQNFRTLEI--SAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKP 120
           S+SG+KLRRQ+F+TL++  SAAAA+AV+A SES VADDS SESSP KEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 121 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180
           RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 181 ILLNQATDIINLWQQGGGNLA 191
           ILLNQATDIINLWQQGGG+LA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of Cla97C05G093730 vs. TrEMBL
Match: tr|A0A1S3CF24|A0A1S3CF24_CUCME (30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500153 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.2e-84
Identity = 169/193 (87.56%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MMLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLR 60
           MMLSMAVQLQPNV+FCFN S +TAQ A SKP Q+P++VKQRTTA+SCI N HS+ G+KLR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTASSCIPNFHSVFGLKLR 60

Query: 61  RQNFRTLEISAAA--AEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120
           RQN RT EISA+A   EAVEAASESLV DDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  RQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 181 IINLWQQGGGNLA 191
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 192

[Close]

BLAST of Cla97C05G093730 vs. TrEMBL
Match: tr|A0A0A0L9T8|A0A0A0L9T8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.1e-77
Identity = 155/179 (86.59%), Postives = 167/179 (93.30%), Query Frame = 0


Query: 15  FCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLRRQNFRTLEISAAAA 74
           FCFN S +TAQTA SKP ++P++V+QRTTA+SCI N H++ G++LRRQNFRT EISA+AA
Sbjct: 36  FCFNTSNFTAQTA-SKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRRQNFRTQEISASAA 95

Query: 75  --EAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIP 134
             EAVEAASE LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIP
Sbjct: 96  PIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIP 155

Query: 135 GHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 191
           GHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA
Sbjct: 156 GHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 213

[Close]

BLAST of Cla97C05G093730 vs. TrEMBL
Match: tr|A0A2P5DY63|A0A2P5DY63_PARAD (Ribosomal protein PSRP-3/Ycf OS=Parasponia andersonii OX=3476 GN=PanWU01x14_021920 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.4e-53
Identity = 123/192 (64.06%), Postives = 140/192 (72.92%), Query Frame = 0


Query: 2   MLSMAVQLQPNVNFCFN-ASYTAQT--ATSKPLQVPYSVKQRTTAASCIANLHSLSGVKL 61
           M +MAVQ Q N+N  F  +S+  QT      P+Q   S K R    +   NL SL  +KL
Sbjct: 1   MPAMAVQFQANLNATFKPSSWPPQTHFQNLTPIQTSTSAKPRAFFPN--LNLRSLPELKL 60

Query: 62  RRQNFRTLEISAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWM 121
              + +  E+ A++  A  A SE    D+S  E+ P  EKLGVVVKP+EKPRLVLKFIWM
Sbjct: 61  SHSSGK-FELRASSVAAESAVSEEAPVDESAIETPPDTEKLGVVVKPLEKPRLVLKFIWM 120

Query: 122 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 181
           EKNIGIALDQ+IPGHGTIPLSPYYFWPRKDAWEELKVLLE+KPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGIALDQVIPGHGTIPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDI 180

Query: 182 INLWQQGGGNLA 191
           INLWQQ GGNLA
Sbjct: 181 INLWQQSGGNLA 189

[Close]

BLAST of Cla97C05G093730 vs. TrEMBL
Match: tr|M5XDM2|M5XDM2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G238100 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 5.8e-52
Identity = 112/142 (78.87%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 51  HSLSGVKLR-RQNFRTLEISAAAAEAVEAASESLVADDSDSESSPV-KEKLGVVVKPMEK 110
           HSLS +KLR  Q  R +++SAAA   V  A E+  ADD+ +  +P+ KEKLGVVVKP+EK
Sbjct: 53  HSLSELKLRLTQTTRNVKLSAAAESLV--AEETAAADDNLTTETPLEKEKLGVVVKPIEK 112

Query: 111 PRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQM 170
           PRLVLKFIWMEKNIGIALDQMIPGHG+IPLSPYYFWPRKDAWEELKVLLESKPWISQKQM
Sbjct: 113 PRLVLKFIWMEKNIGIALDQMIPGHGSIPLSPYYFWPRKDAWEELKVLLESKPWISQKQM 172

Query: 171 IILLNQATDIINLWQQGGGNLA 191
           IILLNQATDIINLWQQ GGNLA
Sbjct: 173 IILLNQATDIINLWQQSGGNLA 192

[Close]

BLAST of Cla97C05G093730 vs. TrEMBL
Match: tr|A0A059AE97|A0A059AE97_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01498 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.9e-50
Identity = 115/189 (60.85%), Postives = 133/189 (70.37%), Query Frame = 0


Query: 2   MLSMAVQLQPNVNFCFNASYTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLRRQ 61
           ML+MAV+ + +        +      SKP +  +   ++T    C       +G+K+ R 
Sbjct: 50  MLTMAVEPKVSAALVQRPPFLCSDVVSKPSRASFFAARKT--GRC-------AGLKVGRC 109

Query: 62  NFRTLEISAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKN 121
             R + ISA +A A   A+E   A DS  E    KEKLGVVVKPM+KPRLVLKFIWMEKN
Sbjct: 110 GSRGIRISAVSAAAEAVAAEETPAADSSPEVVQDKEKLGVVVKPMDKPRLVLKFIWMEKN 169

Query: 122 IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 181
           IGIALDQMIPGHGTIPLS YYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL
Sbjct: 170 IGIALDQMIPGHGTIPLSSYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 229

Query: 182 WQQGGGNLA 191
           WQQ GG+L+
Sbjct: 230 WQQSGGDLS 229

[Close]

BLAST of Cla97C05G093730 vs. Swiss-Prot
Match: sp|P82412|RRP3_SPIOL (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.9e-48
Identity = 110/190 (57.89%), Postives = 129/190 (67.89%), Query Frame = 0


Query: 2   MLSMAVQLQPNVNFCFNAS-YTAQTATSKPLQVPYSVKQRTTAASCIANLHSLSGVKLRR 61
           MLSMAV  QPN+N     S Y +   + KP + P     +           S S  +L++
Sbjct: 1   MLSMAV--QPNINAIAKPSIYQSPKLSLKPFKTPAFANPKPF-------FSSPSFSQLKK 60

Query: 62  QNFRTLEISAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEK 121
           +N  +L ++      V      +   D D +    KEKL V+VKPM+KPRLVLKFIWMEK
Sbjct: 61  KNNWSLFVAPETISDVAIMGNEV---DIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEK 120

Query: 122 NIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIIN 181
           NIG+ALDQ IPGHGT+PLSPYYFWPRKDAWEELKVLLE+KPWISQKQMIILLNQATDIIN
Sbjct: 121 NIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDIIN 178

Query: 182 LWQQGGGNLA 191
           LWQQ GGNLA
Sbjct: 181 LWQQSGGNLA 178

[Close]

BLAST of Cla97C05G093730 vs. Swiss-Prot
Match: sp|Q9LFV0|RRP32_ARATH (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 92/188 (48.94%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 5   MAVQLQPNVNFCFNASYTAQTATSKPL-QVPYSVKQRTTAASCIANLHSLSGVKLRRQNF 64
           MAVQ   + +F F  +  +Q  +SKP+  +  S K + ++   ++      G    R + 
Sbjct: 1   MAVQANQSASFGFRTASPSQKLSSKPIAHISLSTKLKPSSRPSLSCSTWNQGQIPARHSC 60

Query: 65  RTLEISAAAAEAVEAASESLVADDSDSESSPV-KEKLGVVVKPMEKPRLVLKFIWMEKNI 124
               I A     +  + E       +SES P+ K+K+ V+VKP+EKP++VLKF+WM+K+I
Sbjct: 61  INPGIFAYPPSNLTFSHEL-----PESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDI 120

Query: 125 GIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLW 184
           G+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQATDIINLW
Sbjct: 121 GVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLW 180

Query: 185 QQGGGNLA 191
           Q  GG+L+
Sbjct: 181 QSSGGDLS 183

[Close]

BLAST of Cla97C05G093730 vs. Swiss-Prot
Match: sp|Q9SX22|RRP31_ARATH (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g68590 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.5e-39
Identity = 80/122 (65.57%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 68  ISAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALD 127
           I+ AA E + A + + +    ++    +K     VVKP EK R+VLKF+WMEKNIG+ LD
Sbjct: 47  ITLAAPETLTAETVTGIDTSDNTPQQTIK-----VVKPDEKSRVVLKFVWMEKNIGLGLD 106

Query: 128 QMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGG 187
           Q +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GG
Sbjct: 107 QHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGG 163

Query: 188 NL 190
           NL
Sbjct: 167 NL 163

[Close]

BLAST of Cla97C05G093730 vs. Swiss-Prot
Match: sp|O48609|RRP3_HORVU (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.7e-38
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 87  DSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPR 146
           + D+E+    E+  V V   + P LVLKFIWMEKNIGIALDQM+PG G+IPLSPYYFWPR
Sbjct: 77  EGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPR 136

Query: 147 KDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 191
           KDAWEEL+  LE K WISQKQMIILLNQATDIINLWQQGGG+L+
Sbjct: 137 KDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLS 180

[Close]

BLAST of Cla97C05G093730 vs. Swiss-Prot
Match: sp|P51351|RRP3_PORPU (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=ycf65 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-22
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 110 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 169
           +  LK +W+E NI IA+DQ++ G+GT PL+ Y+FWPR DAWEELK  LESKPWI+++  I
Sbjct: 3   KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 62

Query: 170 ILLNQATDIINLWQQGG 187
            LLN+ T++IN WQ+ G
Sbjct: 63  ELLNKTTEVINYWQEEG 78

[Close]

BLAST of Cla97C05G093730 vs. TAIR10
Match: AT5G15760.1 (Ribosomal protein PSRP-3/Ycf65)

HSP 1 Score: 164.1 bits (414), Expect = 8.5e-41
Identity = 92/188 (48.94%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 5   MAVQLQPNVNFCFNASYTAQTATSKPL-QVPYSVKQRTTAASCIANLHSLSGVKLRRQNF 64
           MAVQ   + +F F  +  +Q  +SKP+  +  S K + ++   ++      G    R + 
Sbjct: 1   MAVQANQSASFGFRTASPSQKLSSKPIAHISLSTKLKPSSRPSLSCSTWNQGQIPARHSC 60

Query: 65  RTLEISAAAAEAVEAASESLVADDSDSESSPV-KEKLGVVVKPMEKPRLVLKFIWMEKNI 124
               I A     +  + E       +SES P+ K+K+ V+VKP+EKP++VLKF+WM+K+I
Sbjct: 61  INPGIFAYPPSNLTFSHEL-----PESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDI 120

Query: 125 GIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLW 184
           G+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQATDIINLW
Sbjct: 121 GVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLW 180

Query: 185 QQGGGNLA 191
           Q  GG+L+
Sbjct: 181 QSSGGDLS 183

[Close]

BLAST of Cla97C05G093730 vs. TAIR10
Match: AT1G68590.1 (Ribosomal protein PSRP-3/Ycf65)

HSP 1 Score: 162.5 bits (410), Expect = 2.5e-40
Identity = 80/122 (65.57%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 68  ISAAAAEAVEAASESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALD 127
           I+ AA E + A + + +    ++    +K     VVKP EK R+VLKF+WMEKNIG+ LD
Sbjct: 47  ITLAAPETLTAETVTGIDTSDNTPQQTIK-----VVKPDEKSRVVLKFVWMEKNIGLGLD 106

Query: 128 QMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGG 187
           Q +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GG
Sbjct: 107 QHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGG 163

Query: 188 NL 190
           NL
Sbjct: 167 NL 163

The following BLAST results are available for this feature:

BLAST of Cla97C05G093730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145640.1	4.6e-85	87.56	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis sativus]	[more]
XP_008461583.1	1.8e-84	87.56	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo]	[more]
XP_023522262.1	2.0e-80	81.09	30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022148098.1	7.7e-80	81.68	30S ribosomal protein 3, chloroplastic-like [Momordica charantia]	[more]
XP_022997676.1	6.5e-79	79.60	30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Cla97C05G093730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CF24\|A0A1S3CF24_CUCME	1.2e-84	87.56	30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
tr\|A0A0A0L9T8\|A0A0A0L9T8_CUCSA	1.1e-77	86.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=4 SV=1	[more]
tr\|A0A2P5DY63\|A0A2P5DY63_PARAD	2.4e-53	64.06	Ribosomal protein PSRP-3/Ycf OS=Parasponia andersonii OX=3476 GN=PanWU01x14_0219...	[more]
tr\|M5XDM2\|M5XDM2_PRUPE	5.8e-52	78.87	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G238100 PE=4 SV=1	[more]
tr\|A0A059AE97\|A0A059AE97_EUCGR	1.9e-50	60.85	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01498 PE=4 SV...	[more]

BLAST of Cla97C05G093730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82412\|RRP3_SPIOL	6.9e-48	57.89	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=...	[more]
sp\|Q9LFV0\|RRP32_ARATH	1.5e-39	48.94	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
sp\|Q9SX22\|RRP31_ARATH	4.5e-39	65.57	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
sp\|O48609\|RRP3_HORVU	1.7e-38	73.08	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 ...	[more]
sp\|P51351\|RRP3_PORPU	8.5e-22	57.14	Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=...	[more]

BLAST of Cla97C05G093730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15760.1	8.5e-41	48.94	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.1	2.5e-40	65.57	Ribosomal protein PSRP-3/Ycf65	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR038447	PSRP-3/Ycf65_sf
IPR006924	Ribosomal_PSRP3/Ycf65

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006525	arginine metabolic process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0006557	S-adenosylmethioninamine biosynthetic process
biological_process	GO:0008295	spermidine biosynthetic process
biological_process	GO:0006597	spermine biosynthetic process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004014	adenosylmethionine decarboxylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G093730.1	Cla97C05G093730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 138..184 e-value: 1.3E-26 score: 92.4
IPR006924	Ribosomal protein PSRP-3/Ycf65	PANTHER	PTHR35108	FAMILY NOT NAMED	coord: 1..189
IPR006924	Ribosomal protein PSRP-3/Ycf65	PRODOM	PD015453		coord: 110..185 e-value: 4.0E-37 score: 386.0
IPR038447	PSRP-3/Ycf65 superfamily	GENE3D	G3DSA:1.20.58.750		coord: 110..188 e-value: 3.5E-34 score: 118.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G093730	Cla013241	Watermelon (97103) v1	wmwmbB206
Cla97C05G093730	Csa3G271370	Cucumber (Chinese Long) v2	cuwmbB213
Cla97C05G093730	ClCG05G011680	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G093730	CSPI03G20590	Wild cucumber (PI 183967)	cpiwmbB219
Cla97C05G093730	Lsi05G003870	Bottle gourd (USVL1VR-Ls)	lsiwmbB340
Cla97C05G093730	MELO3C023788.2	Melon (DHL92) v3.6.1	medwmbB427
Cla97C05G093730	CsaV3_3G020570	Cucumber (Chinese Long) v3	cucwmbB216
Cla97C05G093730	Bhi01G001457	Wax gourd	wgowmbB189

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G093730	Silver-seed gourd	carwmbB0503
Cla97C05G093730	Silver-seed gourd	carwmbB0795
Cla97C05G093730	Cucumber (Gy14) v2	cgybwmbB209
Cla97C05G093730	Cucumber (Gy14) v1	cgywmbB004
Cla97C05G093730	Cucurbita maxima (Rimu)	cmawmbB264
Cla97C05G093730	Cucurbita maxima (Rimu)	cmawmbB473
Cla97C05G093730	Cucurbita moschata (Rifu)	cmowmbB244
Cla97C05G093730	Cucurbita moschata (Rifu)	cmowmbB454
Cla97C05G093730	Wild cucumber (PI 183967)	cpiwmbB224
Cla97C05G093730	Cucumber (Chinese Long) v3	cucwmbB220
Cla97C05G093730	Cucumber (Chinese Long) v2	cuwmbB218
Cla97C05G093730	Bottle gourd (USVL1VR-Ls)	lsiwmbB329
Cla97C05G093730	Melon (DHL92) v3.6.1	medwmbB431
Cla97C05G093730	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G093730	Wax gourd	wgowmbB194