CSPI03G20590 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATATTGCACCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCCATCTCCGAACGCACTCTCTATGATGTTATCCATGGCAGTTCAACTTCAGCCCAATGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTTCAAAACCGTTCAAACTTCCTTTTGCTGTGAGGCAAAGAACCACCGCTTCTTCCTGCATTCCCAACTTCCATTCTGTTTTTGGCTTGCAATTGAGGCGCCAGAACTTCAGAACTCAAGAAATCTCTGCTTCTGCTGCGCCCATTGAAGCTGTCGAAGCTGCTTCAGAATTGCTTGTTGCTGATGATTCCGACTCCGTCTCTTCTCCTGTTAAGGAGGTCTCTCTCTCTCTCTTCCTCCCTTTCTATCTCGTCTGATTGCTCAGTTTAGTTTCGTTCGTTTTCAGCAAGTTGAAAAATGAATCCTTGTTTTTTCTGCTGGATGGAGATCGTCTGATATTTGGGGGAGAGCTACCGAAAGTTTGGTAAACAAACAGTACTGTCGTTTCTTAGTTAGTTGAGAGGGGCGGATTTATTGGTGAATTTGGTTACTTGAAAGCTCGTTCTATTTCTAAATTTTTTTTTGTTTCTTTTTTTTAAATGTTCTTGCTTTCATTTCAGTTTTTGGTTCTTTTCAAAGAAACTGCTTGAATTCATTGAGATCCTATAGCTTACTGTGGCTATGTATTGTACATTGTTTGTTTGATCGAGTAGTGTTGTTTTCTCTATGAACACATGGTAGAAATTCTGGTATAACGAATTACTAATACTTTGTGAGTAACTTGGAAGATAGGTTCTAACAAGAATGTTGATGTTGATTTTCATGGATCCCTAAAAGTTTATAATTTGAAATGAACGTATTGAAGAATATCAATTCTCATACAGTAGTTAAATGATTGATGCAGCATTAACATTAAATTGTTAATTTTATTAATTCCAAATTGAAGTTTGAATAAGTAATGAATTAATACTCCTTGTTGGCTGAATTGCTATTTTCTCTAGGTTTCTGGTTATATCTGTGTTATTGTGATTTCAATTGGGACGTGGTTGGTTTTTTGAATGCTCATTTTATTATTGCCTTGCCTTGAGCATTTATTTAGGGTTGGTTTTGGTTTTTTGTTGTTAGGTTTGAGCATTGCTTTAATTGTTAAACTTTATCACTTTGTGGCTGGATTTGGATGTCTCTTCACCAAGTTTTGGATATTGTATTTGGAATTTGATTTTTTTAGCTAAATTTAAGTGATATTTTGCTGCTTTTCGAACAATACTCTAGTTTCGTTTTGTGAGATTTCAGTTTCATCAATATTTCAGTTTAAATTTCAATTCGATAAAGTTATAACTTAGCCTCGTAGGCTAATGTATATGTAGTTCTTTTCTTTTCCCCTCCCTTTGTCCATACCTTAAGGGGATGCTTTTTGCTTGCTGATTAACCTAGGTTTAGTTTGTATTTGCGTAATCTACCCCTAGAATTTGTAAAGGAATGAGTTGTAGAAATCTTGGTATGTGTAAAATATGTTTTGTTTAAGTTCAACTATAAAACCTGTGGTTTCATTTTGTTATATGTATGTAACCTTTGTTGTTGTAGCTTGTGGAATTAGCTAACTGTTGACCTGTGGGATAAGAATCGTAATTTGGATAAATAAGCTCATGTACTAAAGTTTAGTCATACCTCTTTGCTATCTTAACATTCAGCTACACAAATACAACTTGTGTGCTAATCAAGTCCTAAAGATATCTTTTATGTTACACTAAATAATATCTAGAACAACTCTAAGCATATGTAGTTTTTTAACAAGTATTTACTATAAACAAACTCATACTTTCCCCACTTGGCTTTACTTTAACCATATTAGGAGTCTTAGAGGTAATCTCCCTCCCTTTGATAAGATGATATCAACATCAAATACTGAAACTGACTGTACAACAGTGAAACTCTTTTTATTCTCATTATTTTTGTGAAACACAATTAAACAAGTACTGGTATTTTGATTTTATAGTTTCCTTTTGCTTTTACAAATGAAAACTTGAGCAAAATAGATTTATCAGGAAGCCCTTCTCTGGCAAATTATACATTTTGACGATTCATTTTTTAATGTTATAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTTATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCGTACTACTTTTGGCCTCGGAAAGATGCATGGGAAGAACTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATTCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAAGCTCCAATGTAAAAAGTTTCAAATTTTTTTGATAGTGGTCTTAGATTGTGACTATTCTTGAATCGTACGGCTGTTCAGATGTCCTTTTTCGTATATTCTGAAGTAATTTTATAATTTATAAATGACTCATCTTTTGTTGTATATTATGTTGGTTGTGTAACCCATCTACAGTTCACATTTTCCGTTGAAAGTTTTGTTCATATTCAATATGAAAACCTATTATTT ATGCATATTGCACCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCCATCTCCGAACGCACTCTCTATGATGTTATCCATGGCAGTTCAACTTCAGCCCAATGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTTCAAAACCGTTCAAACTTCCTTTTGCTGTGAGGCAAAGAACCACCGCTTCTTCCTGCATTCCCAACTTCCATTCTGTTTTTGGCTTGCAATTGAGGCGCCAGAACTTCAGAACTCAAGAAATCTCTGCTTCTGCTGCGCCCATTGAAGCTGTCGAAGCTGCTTCAGAATTGCTTGTTGCTGATGATTCCGACTCCGTCTCTTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTTATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCGTACTACTTTTGGCCTCGGAAAGATGCATGGGAAGAACTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATTCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAA ATGCATATTGCACCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCCATCTCCGAACGCACTCTCTATGATGTTATCCATGGCAGTTCAACTTCAGCCCAATGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTTCAAAACCGTTCAAACTTCCTTTTGCTGTGAGGCAAAGAACCACCGCTTCTTCCTGCATTCCCAACTTCCATTCTGTTTTTGGCTTGCAATTGAGGCGCCAGAACTTCAGAACTCAAGAAATCTCTGCTTCTGCTGCGCCCATTGAAGCTGTCGAAGCTGCTTCAGAATTGCTTGTTGCTGATGATTCCGACTCCGTCTCTTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTTATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCGTACTACTTTTGGCCTCGGAAAGATGCATGGGAAGAACTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATTCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAA
BLAST of CSPI03G20590 vs. Swiss-Prot
Match: RRP3_SPIOL (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 2.8e-50 Identity = 116/192 (60.42%), Postives = 133/192 (69.27%), Query Frame = 1
BLAST of CSPI03G20590 vs. Swiss-Prot
Match: RRP31_ARATH (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=At1g68590 PE=2 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 7.7e-40 Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 1
BLAST of CSPI03G20590 vs. Swiss-Prot
Match: RRP32_ARATH (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=At5g15760 PE=2 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 7.7e-40 Identity = 89/189 (47.09%), Postives = 120/189 (63.49%), Query Frame = 1
BLAST of CSPI03G20590 vs. Swiss-Prot
Match: RRP3_HORVU (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare GN=PSRP3 PE=2 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 2.9e-39 Identity = 98/178 (55.06%), Postives = 114/178 (64.04%), Query Frame = 1
BLAST of CSPI03G20590 vs. Swiss-Prot
Match: RRP3_PYRYE (Probable 30S ribosomal protein 3, chloroplastic OS=Pyropia yezoensis GN=ycf65 PE=3 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 7.2e-22 Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 1
BLAST of CSPI03G20590 vs. TrEMBL
Match: A0A0A0L9T8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271370 PE=4 SV=1) HSP 1 Score: 417.5 bits (1072), Expect = 9.5e-114 Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 1
BLAST of CSPI03G20590 vs. TrEMBL
Match: M5XDM2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011873mg PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 8.8e-51 Identity = 123/199 (61.81%), Postives = 142/199 (71.36%), Query Frame = 1
BLAST of CSPI03G20590 vs. TrEMBL
Match: F6HSE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g03060 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 1.3e-49 Identity = 112/188 (59.57%), Postives = 125/188 (66.49%), Query Frame = 1
BLAST of CSPI03G20590 vs. TrEMBL
Match: A0A059AE97_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01498 PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 1.7e-49 Identity = 121/207 (58.45%), Postives = 138/207 (66.67%), Query Frame = 1
BLAST of CSPI03G20590 vs. TrEMBL
Match: W9SB90_9ROSA (30S ribosomal protein 3 OS=Morus notabilis GN=L484_008649 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 2.4e-48 Identity = 111/191 (58.12%), Postives = 128/191 (67.02%), Query Frame = 1
BLAST of CSPI03G20590 vs. TAIR10
Match: AT1G68590.1 (AT1G68590.1 Ribosomal protein PSRP-3/Ycf65) HSP 1 Score: 165.2 bits (417), Expect = 4.3e-41 Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 1
BLAST of CSPI03G20590 vs. TAIR10
Match: AT5G15760.1 (AT5G15760.1 Ribosomal protein PSRP-3/Ycf65) HSP 1 Score: 165.2 bits (417), Expect = 4.3e-41 Identity = 89/189 (47.09%), Postives = 120/189 (63.49%), Query Frame = 1
BLAST of CSPI03G20590 vs. NCBI nr
Match: gi|700202611|gb|KGN57744.1| (hypothetical protein Csa_3G271370 [Cucumis sativus]) HSP 1 Score: 417.5 bits (1072), Expect = 1.4e-113 Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 1
BLAST of CSPI03G20590 vs. NCBI nr
Match: gi|449455804|ref|XP_004145640.1| (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 382.9 bits (982), Expect = 3.7e-103 Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 1
BLAST of CSPI03G20590 vs. NCBI nr
Match: gi|659123285|ref|XP_008461583.1| (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo]) HSP 1 Score: 362.8 bits (930), Expect = 4.0e-97 Identity = 181/192 (94.27%), Postives = 185/192 (96.35%), Query Frame = 1
BLAST of CSPI03G20590 vs. NCBI nr
Match: gi|225452011|ref|XP_002283616.1| (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Vitis vinifera]) HSP 1 Score: 210.7 bits (535), Expect = 2.5e-51 Identity = 116/192 (60.42%), Postives = 129/192 (67.19%), Query Frame = 1
BLAST of CSPI03G20590 vs. NCBI nr
Match: gi|296087288|emb|CBI33662.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 209.1 bits (531), Expect = 7.4e-51 Identity = 115/191 (60.21%), Postives = 128/191 (67.02%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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