Carg07476 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07476
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	30S ribosomal protein 3, chloroplastic-like
Location	Cucurbita_argyrosperma_scaffold_019 : 1033404 .. 1036147 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGACCAGTTCTCACTCTATAGTACGATGTTTGAGGTAAAGTTAACCTTTAAATGTTGATTTCATTAAGTCGAACCTTAAAATTGTATAACTAATGAATTAATACCTCTTGTTGGTCGTTCTTCTAGGTTTTGGTTAGATGTTGGGCTGGATTCTGGTCATGGAAATTGGGATACAGTTACTTTTGTGAACGCTCAGTTTTATGGTTGTTTTGAGCATTAGTTTTTGGTTGGATCTTGATGTTTTAGTGTTGAATGCGAGTACATTTTTATGTCGAGAAAAATAGTTTTATCAGGAAGGCCTTGTCTTACAAATTAAACATTCATTGTTTTTCCGATGTTGTAGAAACTTGGAGTGGTTGTGAAACCGATGGAAAAGCCACGGCTTGTTCTGAAGTTCATATGGATGGAGAAGAACATTGGCATTGGACTTGATCAGATGATTCCTGGTCATGGAACTATTCCTCTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTAAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAGCCTGGCTTAATCTCAAATGTAAAAAGTTTCGGAAATTTTTTGATAGTGCTCTTAGATTGTGACTATTCTTGAATCCTACGGCTGTTCTGATGTCCTTTCTCGTATGTTATGAAGTAATATTATAATTTATGAATGACTCTTTTATTGTATATTTTGTTGGTTATGTAAGCCATCTGCAGTTCTCATTTCCCATTGAAAAGTTTGTTCATAGTGAATGTGCAAACCTGTTGTTTTATGCATAGCTGTAATGAGATATTTATCGTAGTTTTAACAAGTCTGGGTTGATGAAGCTTGATGTTGGGCGACATGGATTTTGTCAGTATAAGGTTTGAGTTTCACTAACTTGAATATTACTCAGCTAGTTGAGATGTTCACTAAAATGTCTGATTTATTTCTTTTCCTAGCCTTAGTTATTATGAGATTCCATATCGGTTGGAGAGGGGAACGAAGCATTCTTTACAAGAGTGTAGAAACCTTTCCCTACCAGACACGTTTTAAAACCTTGAGGGGAAATCTAGAAGAAAAAGCCCAAAGAGGACAATATGCGCTAGCAGTGGGCTTGGGCTGTTATGGTTACACTCTTACACTCTATTCAACAGGTACTCAAAAAGAAATCTTGAAAGAATAATGAAGTTTACAGGTCTAGTCTAGCAAAATTGGAAGCTATTGTTTGTATGCTGGGTTCATGAGTTTCACCTCATGTTTGCTTCCAATATAGATGTGATCAGCCTGGATTTCAGCAAAATCCCCTTGAAATTTACTTCAATGCATGAGCTCTGATATCCTCATCTGAAATTTCATTTTTACTGGCAAACTCTTCTTTACTAATTAACCTGTCATTTCCTGGTTCATTGTGGAAGATTGAATTTGAATTTGATGATTTCTCCTTGAGATTGCTAATATCTGAATCCAAATTTGGAACAGATGACATATTTTCTTTGGCAGGTTCAGCTGGTGATTCTTCTTGATTCCTTTCTTCTATGTATTTATATTCTGAACTGCAGCTTTCAAGTTCAACAAGATGAGTATTTTCAAAACTAAAATCGTCTGAATGGTCAATCTTACTGTAAGGTATGCTAGCTTCTTCTGCATTAAGCTTGGATTTGTGAGAACTATCCATCTTTGAGGCTTTTTCATTTTTGTGAAAATAAGAGCCATCTTCATGATCTATATCGATATCCTGTGATTTAGACCTCGAAAACTCGATTTCAGCTTTTGTTGCTTGGAAGGCGTCTTGAGCTGCACTAGCTACGTCTTTAAACTTCTTTGCTCTCACTGATTCTGATACTGATTCGTCACTTATAATAACCTCATATACATTATCCGTGGTGTTTATGACTTCAGGATTATCCAAGGTTGCTGATTTCTTGGCTTCCAGCTTCTGCTTTAGCTTTTCCTGCAGTTAACCGATGAATTTTACTAAAAATATACTTCAAAAGTAGAAACATTCCTTACCTTGTTGATTACTGTAGGTTCTTTTTCTAAATGCAGAGTGATGCCGTTCTCAAAAGCAATTTCCTTCAGCACTTTCAGCTTAGTTTCCGCGCTGGGCTGTCTTGTTGAAAACTTTGGATCATCTGTAACATGGAAGTTGTGGTTAGTAAGTGATATGTGCAGGCAACTAATTCTGTTCTTGCAGTTAATTTCAACCTCACCTTAGCGGTGGGCTTAGGCTACTACAGGCTTTTACAAATGGTATCAGAGCTAGGCATTGAGCGGTGTGCCAGCAAGGACGCTAGGTTTTGAAGGGGGTGGATTGTGAGATCCCATGTCGAAAGGGAAAGGTTAAAGAGGACAATATTTGCTAGCAGTGAGCTTTAGCTATTAACTCTCCCAAATTTCAACTTTGAAATCCGACAAATCTCCTGAAGTTCTGGAAACTCTCTGCACCTTGAAGCCTCAAAGATCAGATTCGATACTACCTCCTTCACTTCACCAGGGGATCCCATGCATCCAAGCTTAGCATGCAAATTATACGCATAAGAAGACAGAAAAGAAGCTGAACTGATAGAGATAGAGAAACAAATTACTCTAGCTGAGCGCGTGGTTGGAAAGCAAGGTTCAAGAGCTGAAGAACGTCAGGCTGGGCAAGAGAGCAGCGAGCTTGGTGCTGATTCTTGA

mRNA sequence

ATGGAAGAAGACCAGTTCTCACTCTATAGTACGATGTTTGAGAAACTTGGAGTGGTTGTGAAACCGATGGAAAAGCCACGGCTTGTTCTGAAGTTCATATGGATGGAGAAGAACATTGGCATTGGACTTGATCAGATGATTCCTGGTCATGGAACTATTCCTCTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTAAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGACAGAAAAGAAGCTGAACTGATAGAGATAGAGAAACAAATTACTCTAGCTGAGCGCGTGGTTGGAAAGCAAGGTTCAAGAGCTGAAGAACGTCAGGCTGGGCAAGAGAGCAGCGAGCTTGGTGCTGATTCTTGA

Coding sequence (CDS)

ATGGAAGAAGACCAGTTCTCACTCTATAGTACGATGTTTGAGAAACTTGGAGTGGTTGTGAAACCGATGGAAAAGCCACGGCTTGTTCTGAAGTTCATATGGATGGAGAAGAACATTGGCATTGGACTTGATCAGATGATTCCTGGTCATGGAACTATTCCTCTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTAAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGACAGAAAAGAAGCTGAACTGATAGAGATAGAGAAACAAATTACTCTAGCTGAGCGCGTGGTTGGAAAGCAAGGTTCAAGAGCTGAAGAACGTCAGGCTGGGCAAGAGAGCAGCGAGCTTGGTGCTGATTCTTGA

Protein sequence

MEEDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQDRKEAELIEIEKQITLAERVVGKQGSRAEERQAGQESSELGADS

Homology

[Close]

BLAST of Carg07476 vs. NCBI nr
Match: XP_022948960.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 189.5 bits (480), Expect = 8.0e-45
Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 3   EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP 62
           +D  S  S   EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP
Sbjct: 97  DDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP 156

Query: 63  RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 102
           RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Sbjct: 157 RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 195

[Close]

BLAST of Carg07476 vs. NCBI nr
Match: XP_022997676.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 189.5 bits (480), Expect = 8.0e-45
Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 3   EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP 62
           +D  S  S   EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP
Sbjct: 97  DDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP 156

Query: 63  RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 102
           RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Sbjct: 157 RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 195

[Close]

BLAST of Carg07476 vs. NCBI nr
Match: XP_023522262.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 8.0e-45
Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 3   EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP 62
           +D  S  S   EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP
Sbjct: 97  DDSLSESSPDKEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP 156

Query: 63  RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 102
           RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Sbjct: 157 RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 195

[Close]

BLAST of Carg07476 vs. NCBI nr
Match: XP_004145640.1 (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 1.0e-44
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 3   EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP 62
           +D  S+ S + EKLGVVVKPMEKPRLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWP
Sbjct: 88  DDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWP 147

Query: 63  RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 102
           RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Sbjct: 148 RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 186

[Close]

BLAST of Carg07476 vs. NCBI nr
Match: XP_008461583.1 (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 1.0e-44
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 3   EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP 62
           +D  S+ S + EKLGVVVKPMEKPRLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWP
Sbjct: 88  DDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWP 147

Query: 63  RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 102
           RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Sbjct: 148 RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 186

[Close]

BLAST of Carg07476 vs. TAIR10
Match: AT1G68590.1 (Ribosomal protein PSRP-3/Ycf65)

HSP 1 Score: 158.3 bits (399), Expect = 3.6e-39
Identity = 71/83 (85.54%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 19  VVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKP 78
           VVKP EK R+VLKF+WMEKNIG+GLDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KP
Sbjct: 76  VVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKP 135

Query: 79  WISQKQMIILLNQATDIINLWQQ 102
           WISQK+MIILLNQATDIINLWQQ
Sbjct: 136 WISQKKMIILLNQATDIINLWQQ 158

[Close]

BLAST of Carg07476 vs. TAIR10
Match: AT5G15760.1 (Ribosomal protein PSRP-3/Ycf65)

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-37
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 14  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVL 73
           +K+ V+VKP+EKP++VLKF+WM+K+IG+ LD MIPG GTIPLSPYYFWPRKDAWEELK L
Sbjct: 90  KKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTL 149

Query: 74  LESKPWISQKQMIILLNQATDIINLWQ 101
           LESKPWIS+   + LLNQATDIINLWQ
Sbjct: 150 LESKPWISELHRVFLLNQATDIINLWQ 176

[Close]

BLAST of Carg07476 vs. Swiss-Prot
Match: sp|P82412|RRP3_SPIOL (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.1e-43
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 14  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVL 73
           EKL V+VKPM+KPRLVLKFIWMEKNIG+ LDQ IPGHGT+PLSPYYFWPRKDAWEELKVL
Sbjct: 85  EKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVL 144

Query: 74  LESKPWISQKQMIILLNQATDIINLWQQ 102
           LE+KPWISQKQMIILLNQATDIINLWQQ
Sbjct: 145 LENKPWISQKQMIILLNQATDIINLWQQ 172

[Close]

BLAST of Carg07476 vs. Swiss-Prot
Match: sp|Q9SX22|RRP31_ARATH (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g68590 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.4e-38
Identity = 71/83 (85.54%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 19  VVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKP 78
           VVKP EK R+VLKF+WMEKNIG+GLDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KP
Sbjct: 76  VVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKP 135

Query: 79  WISQKQMIILLNQATDIINLWQQ 102
           WISQK+MIILLNQATDIINLWQQ
Sbjct: 136 WISQKKMIILLNQATDIINLWQQ 158

[Close]

BLAST of Carg07476 vs. Swiss-Prot
Match: sp|Q9LFV0|RRP32_ARATH (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-36
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 14  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVL 73
           +K+ V+VKP+EKP++VLKF+WM+K+IG+ LD MIPG GTIPLSPYYFWPRKDAWEELK L
Sbjct: 90  KKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTL 149

Query: 74  LESKPWISQKQMIILLNQATDIINLWQ 101
           LESKPWIS+   + LLNQATDIINLWQ
Sbjct: 150 LESKPWISELHRVFLLNQATDIINLWQ 176

[Close]

BLAST of Carg07476 vs. Swiss-Prot
Match: sp|O48609|RRP3_HORVU (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-34
Identity = 69/88 (78.41%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 14  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVL 73
           E+  V V   + P LVLKFIWMEKNIGI LDQM+PG G+IPLSPYYFWPRKDAWEEL+  
Sbjct: 87  EEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAK 146

Query: 74  LESKPWISQKQMIILLNQATDIINLWQQ 102
           LE K WISQKQMIILLNQATDIINLWQQ
Sbjct: 147 LEEKEWISQKQMIILLNQATDIINLWQQ 174

[Close]

BLAST of Carg07476 vs. Swiss-Prot
Match: sp|Q9MUN2|RRP3_MESVI (Probable 30S ribosomal protein 3, chloroplastic OS=Mesostigma viride OX=41882 GN=ycf65 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 22  PMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWIS 81
           P++K   VLKF+W+EKN+ + +DQ +   G  P++ Y+FWPRKDAWEELK  L +KPWIS
Sbjct: 17  PLQK--FVLKFLWLEKNLAVTVDQ-VTNRGNSPITEYFFWPRKDAWEELKDALANKPWIS 76

Query: 82  QKQMIILLNQATDIINLWQQDRKEAELIEIE 113
             + I LLNQ TD+IN WQ+D K+  L E +
Sbjct: 77  YDESIALLNQTTDVINYWQEDEKKPSLSEAQ 104

[Close]

BLAST of Carg07476 vs. TrEMBL
Match: tr|A0A1S3CF24|A0A1S3CF24_CUCME (30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500153 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.9e-45
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 3   EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP 62
           +D  S+ S + EKLGVVVKPMEKPRLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWP
Sbjct: 88  DDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWP 147

Query: 63  RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 102
           RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Sbjct: 148 RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 186

[Close]

BLAST of Carg07476 vs. TrEMBL
Match: tr|A0A0A0L9T8|A0A0A0L9T8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.9e-45
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 3   EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWP 62
           +D  S+ S + EKLGVVVKPMEKPRLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWP
Sbjct: 109 DDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWP 168

Query: 63  RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 102
           RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Sbjct: 169 RKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ 207

[Close]

BLAST of Carg07476 vs. TrEMBL
Match: tr|A0A2P4LX19|A0A2P4LX19_QUESU (30s ribosomal protein 3, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_46379 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-43
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 14  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVL 73
           EKLGVVVKPMEKPR+VLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVL
Sbjct: 14  EKLGVVVKPMEKPRIVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVL 73

Query: 74  LESKPWISQKQMIILLNQATDIINLWQQ 102
           LESKPWISQKQ+IILLNQATDIINLWQQ
Sbjct: 74  LESKPWISQKQIIILLNQATDIINLWQQ 101

[Close]

BLAST of Carg07476 vs. TrEMBL
Match: tr|A0A2P6S346|A0A2P6S346_ROSCH (Putative ribosomal protein PSRP-3/Ycf65 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0162921 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 14  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVL 73
           EKLGVVVKPMEKPRLVLKFIWMEKNIGI LDQMIPGHG+IPLSPYYFWPRKDAWEELKVL
Sbjct: 95  EKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGSIPLSPYYFWPRKDAWEELKVL 154

Query: 74  LESKPWISQKQMIILLNQATDIINLWQQ 102
           LESKPWISQKQMIILLNQATDIINLWQQ
Sbjct: 155 LESKPWISQKQMIILLNQATDIINLWQQ 182

[Close]

BLAST of Carg07476 vs. TrEMBL
Match: tr|A0A2P4LXZ3|A0A2P4LXZ3_QUESU (30s ribosomal protein 3, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_46379 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.8e-43
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 15  KLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL 74
           KLGVVVKPMEKPR+VLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL
Sbjct: 29  KLGVVVKPMEKPRIVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL 88

Query: 75  ESKPWISQKQMIILLNQATDIINLWQQ 102
           ESKPWISQKQ+IILLNQATDIINLWQQ
Sbjct: 89  ESKPWISQKQIIILLNQATDIINLWQQ 115

The following BLAST results are available for this feature:

BLAST of Carg07476 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948960.1	8.0e-45	91.92	30S ribosomal protein 3, chloroplastic-like [Cucurbita moschata]	[more]
XP_022997676.1	8.0e-45	91.92	30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima]	[more]
XP_023522262.1	8.0e-45	91.92	30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_004145640.1	1.0e-44	90.91	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis sativus]	[more]
XP_008461583.1	1.0e-44	90.91	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo]	[more]

BLAST of Carg07476 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68590.1	3.6e-39	85.54	Ribosomal protein PSRP-3/Ycf65	[more]
AT5G15760.1	1.5e-37	75.86	Ribosomal protein PSRP-3/Ycf65	[more]

BLAST of Carg07476 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82412\|RRP3_SPIOL	5.1e-43	90.91	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=...	[more]
sp\|Q9SX22\|RRP31_ARATH	6.4e-38	85.54	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
sp\|Q9LFV0\|RRP32_ARATH	2.7e-36	75.86	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
sp\|O48609\|RRP3_HORVU	1.5e-34	78.41	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 ...	[more]
sp\|Q9MUN2\|RRP3_MESVI	1.3e-22	52.75	Probable 30S ribosomal protein 3, chloroplastic OS=Mesostigma viride OX=41882 GN...	[more]

BLAST of Carg07476 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CF24\|A0A1S3CF24_CUCME	6.9e-45	90.91	30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
tr\|A0A0A0L9T8\|A0A0A0L9T8_CUCSA	6.9e-45	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=4 SV=1	[more]
tr\|A0A2P4LX19\|A0A2P4LX19_QUESU	1.0e-43	97.73	30s ribosomal protein 3, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_46379 ...	[more]
tr\|A0A2P6S346\|A0A2P6S346_ROSCH	2.9e-43	97.73	Putative ribosomal protein PSRP-3/Ycf65 OS=Rosa chinensis OX=74649 GN=RchiOBHm_C...	[more]
tr\|A0A2P4LXZ3\|A0A2P4LXZ3_QUESU	3.8e-43	97.70	30s ribosomal protein 3, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_46379 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR038447	PSRP-3/Ycf65_sf
IPR006924	Ribosomal_PSRP3/Ycf65

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07476-RA	Carg07476-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..145
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 55..101 e-value: 1.4E-26 score: 92.3
IPR006924	Ribosomal protein PSRP-3/Ycf65	PANTHER	PTHR35108	FAMILY NOT NAMED	coord: 11..103
IPR006924	Ribosomal protein PSRP-3/Ycf65	PRODOM	PD015453		coord: 27..102 e-value: 8.0E-37 score: 381.0
IPR038447	PSRP-3/Ycf65 superfamily	GENE3D	G3DSA:1.20.58.750		coord: 27..122 e-value: 4.7E-35 score: 121.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07476	Csa3G271370	Cucumber (Chinese Long) v2	carcuB0780
Carg07476	MELO3C023788	Melon (DHL92) v3.5.1	carmeB0757
Carg07476	CSPI03G20590	Wild cucumber (PI 183967)	carcpiB0798
Carg07476	Cucsa.031480	Cucumber (Gy14) v1	carcgyB0854
Carg07476	CmaCh01G003860	Cucurbita maxima (Rimu)	carcmaB1059
Carg07476	CmoCh01G004080	Cucurbita moschata (Rifu)	carcmoB1033
Carg07476	CsGy3G020280	Cucumber (Gy14) v2	carcgybB0757
Carg07476	MELO3C023788.2	Melon (DHL92) v3.6.1	carmedB0772
Carg07476	CsaV3_3G020570	Cucumber (Chinese Long) v3	carcucB0801
Carg07476	Bhi01G001457	Wax gourd	carwgoB0896

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07476	Silver-seed gourd	carcarB471
Carg07476	Cucurbita maxima (Rimu)	carcmaB1057
Carg07476	Cucurbita moschata (Rifu)	carcmoB1031
Carg07476	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07476	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07476	Bottle gourd (USVL1VR-Ls)	carlsiB700
Carg07476	Watermelon (Charleston Gray)	carwcgB0739
Carg07476	Watermelon (97103) v1	carwmB0760
Carg07476	Watermelon (97103) v1	carwmB0761
Carg07476	Watermelon (97103) v2	carwmbB0795