Csa3G254050 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G254050
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative uncharacterized protein F16L2_100; contains IPR006968 (Protein of unknown function DUF647)
Location	Chr3 : 15859472 .. 15863880 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATCCAAGTAGTTTTGTTTCGTAAGGAAGCTTCTTAGCATTTTTAAAACTACTGGTCAGCCCTGCTTGTCTTCCCCTGAGAAAATACGAACATAGGAATGGTAACCAGAAGTTGGTCGAACGACACACCTTAAAACCCAACCTGAACGTGCCTGGAAATTCATCAAACTTATGGCTCCCCTCTTATCCTCACCGTTCTAATAAAGAATCTGTTTTCTAAACCCTGAATCAGGTCGTTGATGGACTCAATGAACCATTTTAACTGAGGCTTCGTGATCTTAAGTATTTTGTTGAAATCTACATCCTCAATGTTGAATAACCCATTTTCGAACCAGATGCAGTTGTAGGAATTAACCACTTTGCTGCTTACCACTTCCATTTGACCCTCCAAGTTGATGAGAATCGTGAAAGAAGAGGTGAAGGATGGACTGCTCTATCGAACAGAAAAGTTTCCGACGAGAAGGGATTTGGGAGGGGGGAGGAGAGAGAGAACAAACCTTTGACCCATAGGCCTTCACTATTTGCAATTGGAGAGTTTTTATCTTTCTAGATTTTTATTTTTTTGAAGGAAACACACTTTTCATTGATTAATAATCTCAATAATTACATGGAAAAATACAGAAAGAAATTCAGTCAATGACCAAAATAAAGGACTACGCTATAAATCAACTGGGCTTAATGCTGGATAGATCCTCTAGCTGTCTGTATATCAGTCTGGCTAACTGTTTTTTTCCCTTTTAGTTTCAACTGGACTTAATGTTAGGAAGATCTTTTATTCGATTCAATTAACTGACTTTATAATAATTTTATTTTAATAAGGAGCCAAAGTTGAGCTTACTATCTGCCGAAGCGAAGGAATCAGCAGCAAATATTGAAAAGCGACTGCAATTGGGTTCAAAGCTCAGTGATGTGGCCACTTGTGAGGAGGATGTTCTTGAACTCTTAAGTCTGTTCAATAAAGAAAATTATATTCTATCAGAGCACAGGGGAAAATATTGTGTAAGTAAAATCTAAACCCATTTCATTTTAGACCTGAATAAAACTTTTCTTTGGGAAAGGCACAAAGTTGATGGAATTATTTTTCCTGCTCAATTAAATTTGCATTTGGGTTAAATTAATTTTGTTTCTTCTGATTCATTTACTAAACTGTATTTCCACTGTGTGTATTGTTTTGGATTAAGAAGCTTTCTTCTCTTAGTCCAATAGTACTTGATATGAAGCTTTACGCCCTTGTTACCCATGGATTATTAGTTTATGATTTTAGAGAATATTGCAAAAATCATCCATAAAGCAAAAAGATGGGATAGTAAAAAAAACCTCTATACACCCCCTTTTCCATTCACCATCTTTAACCATGTTTTGATGCAAGGCCTCACCAACTCCTGTCACAGAAAGGACGCACAAGAGCACACCCAAGTAATAGGGGAAATATATCTATTGAATTTCATCACAAAAATACATCAATAACCTTAGCCTAATAAGAGGGCTTTACTCTCCACAATGAACTATTGTTCATCCACATAAAATACACATAAACCTAGATAACTAACCCTAGCACAAAACACCCAATATAGACTAACATCGTTCATCCACATAAAACACACATAAACCTTGATAACTAACCCTAGCACAAAACACCCAAATATATACTAACATTTCCTAAGAACATAGGACCACAACAACTACCCTTTTGTCGGGGTGAAAACCCCTTCCTACCCCTCCTCCTATATACTTGCTTAATAGGTGGCCTTGCAATACCCTAATGGAGAAGAGTTACCTTATCCTCAAGGTGAAAATTAGGGAACTGGGCCTTAAGGACAGCGTACGATTCCCAACTTTGGACGGGAAGGATCAGACTCACAACAATAAGGGCGATAGAGTGGCCATGGTGGAGAACATGGTGAGGCATTTGGCTATCACCAAGGACACCATAACAACTGGTCACACATCCATCCATCTCCACAGCCGCAAGCCTACGCTGTTGCTGCTTCTTCATCGTCATCATCAATGGAAAACCTTCTCTGCGAGTACATGCAAAAGAATGATGCCCTTTTGTAGAGTCGGGCTGCTACCATCCGCAATCTGAGTTACAGATGGAGCAAATTGCCAGTGACATCTTCGAAAGACTAAGGGGATCCCTCCCTAACAGTACTGAAACGCCAAACCAAGTGGGGGATCGAAAAAGGATCAGTGTCAATCTGTGATGCTAAGAAACGCAAGGAACTTAACCATCCGCGAACTAGACCAAGAATAGTCAGTCTACTTCTTTGCCTAATACCACGAATGACCATTCACACAGTACTGACACTTCTCCTATTGTTTTTTCTTCAACTAATGATCTTTCTTCTTTGTAGAATGACAGTACTGAAAAACAAGAAAGTTGAGACTACCAGAGAAGATCTAAAATGCAGGCAGACGTCTAATTAGGCGTCATCATCTAATCTGTTGCCTCTCTTTTGACCCAGCATAGCCTTACTGCCACATCACTTGCGTTGCACTTCAGTTTGAAAGGTTGCGACCAATCAGGTGTGATGAGGATAAGCATTGAGGTCAATGCGTCTTTCAAAGTTTGGAACACCTAGTTGCATTTCTCATCAAACATATAGGGTTGGTTGGCGCTTAATAGGTTGCTCAATGGCTTAGCGAGCTGAGAGAAACCTCAAGTGAATCTTTTGTAAAAGCCAGCATGTCCCAAAAAGCTTCGTAAACATTTGATATCAGAAGGCGTTGGAAACTTGCTCACCACATTAATCTTCGCATGGTCTACTTCTAAGCCTGCTTGGAGAGCTTGTGCCCTAGCAAAATCCCCTCGATTATCATTAAATTACACTTTTCCTTGTTGTGTATTAAGCATGTCTTCTTCCATCTCTTCAATACCTCTTCCAAGTTGTTCAGACATTCGATATATGATTTCCAAAGATTGAGAAGTCATTCATAAAAATTTCTACTGATCTGTTTAAAAAGTCCGAAAATATTGCCATCATGCACCTTTAAAATGTCCATGGCAGATTACACAATCCAAAAGGCATGTGATGAAAAGCAAACGTGCCGCAAGGACAAGTAAATGTGGTTTTGTGCTAATCTTTGGGTGCAATAGTTATCTGATTATACCCATAATAGCCATTCAGAAAGCAATAATACTTGTTGCCTGCAAGTTGGTCCAGCATATGATCAATAAAAGACAAGGGAAAGTGGTTCTTCTTTGTTGCCACATTCAGCTTGTGGTAATCCGCCACCCAGTCACTGTTCTTGTTGGGATTAATTCATTATTCCATCGTTGCGGTCTTTAATTGATAATTTGTTGGTCGGTTGAGTAGCTTAGAAGTCATCTGTTTCTTCCATTATATTCTTTGTTGCTTTTTTTTTTCCTTGTTAATTTTATTTGAAATCTTAACATAAAATTTACAAGTTAAAGATAGAGCTATTCAACTAATCAATAGGGAATTAGTTTCATAATTTACTTGATTTCAAGATGCAATTGAATTAAATAATAATAACAATAACAAAAAATTAATAATCTTCCAATTATGTGTGGTAAGGATTCTTTGAATAACTTAATTTTTTTTATTTGCAACTGCCCAAACTAATGATAAAAAGAAGATTCTGTCTGATGAAGTCAATTTGCTAGATTAGTCAACATAGCGTTGGGTGGTTTAACAAACCAAAAACAAAATTTGATGAAAGATCCTCTTAAATAGAATTATTTGATGACGTAGACTGTGTAGTTTATAAGCATATGTTAAAAATTCCATTAAATCTTATCAATTATTTTACAAAGATAAATTGTTACATATGAAAGTGAATTGTCACAAAATATGAAGGTATGTGACCAAATGGTTGCAAATCAAAGTTCATGTTTCCATCAAAGCTCATTGACCTCAAAAAGTGATGTTTAAGCCAAACTATTATCACCAAAAGAAAGAAAAAAAAAGCTAGTTCATGGCAGAGTTACTAAACAGTCCATGCCAGAGATCCAAATCCCCAAAATAAAAGGTAGAGGGGTTATCTTCATTTCATTTGAAAGAAACACATCTAAGGCTAGAAAATCATTCTATTTGAAGTGACCAAGTATTATTTGCTAAGAGTATCACTATATAAACTCAAATCATGCTGGGAATGTTATTTTATTGTGCAGGTAATGCTTAAAGAAAGTGCTTCGCCTGTAGACATGCTGAAGGCAGTATTTCATGTCAATTATTTGCATTGGTTAGAGAGAAACGCTGGAATAACAGCAAGAAGTGCTTCTAATGACTGCAGACCAGGAGGAAGGCTACAAATGTCTTTGGAGTATGTGGAGAGGGAATTCAAGCATGTCAAATATGATGGGGAATTGGCTGGTTGGTCGACTGATGGCCTAATTGCAAGGCCCTTAACTACTAGGATTTGTGAATGTCATGTAACTTAG

mRNA sequence

ATGCCAATCCAAGAGCCAAAGTTGAGCTTACTATCTGCCGAAGCGAAGGAATCAGCAGCAAATATTGAAAAGCGACTGCAATTGGGTTCAAAGCTCAGTGATGTGGCCACTTGTGAGGAGGATGTTCTTGAACTCTTAAGTCTGTTCAATAAAGAAAATTATATTCTATCAGAGCACAGGGGAAAATATTGTGTAATGCTTAAAGAAAGTGCTTCGCCTGTAGACATGCTGAAGGCAGTATTTCATGTCAATTATTTGCATTGGTTAGAGAGAAACGCTGGAATAACAGCAAGAAGTGCTTCTAATGACTGCAGACCAGGAGGAAGGCTACAAATGTCTTTGGAGTATGTGGAGAGGGAATTCAAGCATGTCAAATATGATGGGGAATTGGCTGGTTGGTCGACTGATGGCCTAATTGCAAGGCCCTTAACTACTAGGATTTGTGAATGTCATGTAACTTAG

Coding sequence (CDS)

ATGCCAATCCAAGAGCCAAAGTTGAGCTTACTATCTGCCGAAGCGAAGGAATCAGCAGCAAATATTGAAAAGCGACTGCAATTGGGTTCAAAGCTCAGTGATGTGGCCACTTGTGAGGAGGATGTTCTTGAACTCTTAAGTCTGTTCAATAAAGAAAATTATATTCTATCAGAGCACAGGGGAAAATATTGTGTAATGCTTAAAGAAAGTGCTTCGCCTGTAGACATGCTGAAGGCAGTATTTCATGTCAATTATTTGCATTGGTTAGAGAGAAACGCTGGAATAACAGCAAGAAGTGCTTCTAATGACTGCAGACCAGGAGGAAGGCTACAAATGTCTTTGGAGTATGTGGAGAGGGAATTCAAGCATGTCAAATATGATGGGGAATTGGCTGGTTGGTCGACTGATGGCCTAATTGCAAGGCCCTTAACTACTAGGATTTGTGAATGTCATGTAACTTAG

Protein sequence

MPIQEPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYCVMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHVKYDGELAGWSTDGLIARPLTTRICECHVT*

Homology

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BLAST of Csa3G254050 vs. Swiss-Prot
Match: RUS1_ARATH (Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana GN=RUS1 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.4e-45
Identity = 85/138 (61.59%), Postives = 109/138 (78.99%), Query Frame = 1


Query: 10  LLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYCVMLKE 69
           +LS+EAK +AA+IE+RLQLGSKLSDV   +E+ + L  L+  E YIL+EH+G++CVMLKE
Sbjct: 455 VLSSEAKAAAADIEERLQLGSKLSDVIHNKEEAIALFDLYRNEGYILTEHKGRFCVMLKE 514

Query: 70  SASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHVKYDGE 129
           S++P DML+++F VNYL+WLE+NAGI   S  +DC+PGGRL +SL+YV REF+H K D E
Sbjct: 515 SSTPQDMLRSLFQVNYLYWLEKNAGIEPASTYSDCKPGGRLHISLDYVRREFEHAKEDSE 574

Query: 130 LAGWSTDGLIARPLTTRI 148
             GW T+GLIARPL TRI
Sbjct: 575 SVGWVTEGLIARPLPTRI 592

[Close]

BLAST of Csa3G254050 vs. TrEMBL
Match: A0A0A0L9N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G254050 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 9.0e-82
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 1   MPIQEPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHR 60
           MPIQEPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHR
Sbjct: 1   MPIQEPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHR 60

Query: 61  GKYCVMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVERE 120
           GKYCVMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVERE
Sbjct: 61  GKYCVMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVERE 120

Query: 121 FKHVKYDGELAGWSTDGLIARPLTTRICECHVT 154
           FKHVKYDGELAGWSTDGLIARPLTTRICECHVT
Sbjct: 121 FKHVKYDGELAGWSTDGLIARPLTTRICECHVT 153

[Close]

BLAST of Csa3G254050 vs. TrEMBL
Match: A0A0V0ISL3_SOLCH (Putative UPF0420 protein C16orf58-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.8e-51
Identity = 99/143 (69.23%), Postives = 119/143 (83.22%), Query Frame = 1


Query: 5   EPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYC 64
           E +  +LS +AK++AA I +RLQLGSKLSDVAT  EDVL L  L+  E+YIL+EH G++C
Sbjct: 454 EXQXEVLSVQAKQAAAGIVRRLQLGSKLSDVATSREDVLALFELYKNESYILTEHEGRFC 513

Query: 65  VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 124
           ++LKES+SP DMLK++FHVNYL+WLE NAGI +RS +NDCRPGGRLQMSLEYVEREF HV
Sbjct: 514 IVLKESSSPQDMLKSLFHVNYLYWLETNAGIKSRSVANDCRPGGRLQMSLEYVEREFNHV 573

Query: 125 KYDGELAGWSTDGLIARPLTTRI 148
           K DGE+AGW TD LIARPL  RI
Sbjct: 574 KTDGEVAGWVTDSLIARPLPNRI 596

[Close]

BLAST of Csa3G254050 vs. TrEMBL
Match: K4CI48_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.1e-50
Identity = 98/143 (68.53%), Postives = 117/143 (81.82%), Query Frame = 1


Query: 5   EPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYC 64
           E +  +LS  AK++AA I +RLQLGSKLSDVAT +EDVL L  L+  E YIL+EH G++C
Sbjct: 451 ETQTEVLSVHAKQAAAGIVRRLQLGSKLSDVATSQEDVLALFELYKNEGYILTEHEGRFC 510

Query: 65  VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 124
           ++LKES+SP DMLK++FHVNYL+WLE NAGI + S +NDCRPGGRLQMSLEYVEREF HV
Sbjct: 511 IVLKESSSPQDMLKSLFHVNYLYWLETNAGIKSSSVANDCRPGGRLQMSLEYVEREFNHV 570

Query: 125 KYDGELAGWSTDGLIARPLTTRI 148
           K DGE+AGW TD LIARPL  RI
Sbjct: 571 KTDGEVAGWVTDSLIARPLPVRI 593

[Close]

BLAST of Csa3G254050 vs. TrEMBL
Match: M1BL00_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018482 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 97/143 (67.83%), Postives = 116/143 (81.12%), Query Frame = 1


Query: 5   EPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYC 64
           E ++ +LS  AK++AA I +RLQLGSKLSDVAT  EDVL L  L+  E YIL+EH G++C
Sbjct: 95  ETQMEVLSVHAKQAAAGIVRRLQLGSKLSDVATSREDVLALFELYKNEGYILTEHEGRFC 154

Query: 65  VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 124
           ++LKES+SP DMLK++FHVNYL+WLE  AGI + S +NDCRPGGRLQMSLEYVEREF HV
Sbjct: 155 IVLKESSSPQDMLKSLFHVNYLYWLETKAGIKSSSVANDCRPGGRLQMSLEYVEREFNHV 214

Query: 125 KYDGELAGWSTDGLIARPLTTRI 148
           K DGE+AGW TD LIARPL  RI
Sbjct: 215 KTDGEVAGWVTDSLIARPLPNRI 237

[Close]

BLAST of Csa3G254050 vs. TrEMBL
Match: M1BL01_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018482 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 97/143 (67.83%), Postives = 116/143 (81.12%), Query Frame = 1


Query: 5   EPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYC 64
           E ++ +LS  AK++AA I +RLQLGSKLSDVAT  EDVL L  L+  E YIL+EH G++C
Sbjct: 454 ETQMEVLSVHAKQAAAGIVRRLQLGSKLSDVATSREDVLALFELYKNEGYILTEHEGRFC 513

Query: 65  VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 124
           ++LKES+SP DMLK++FHVNYL+WLE  AGI + S +NDCRPGGRLQMSLEYVEREF HV
Sbjct: 514 IVLKESSSPQDMLKSLFHVNYLYWLETKAGIKSSSVANDCRPGGRLQMSLEYVEREFNHV 573

Query: 125 KYDGELAGWSTDGLIARPLTTRI 148
           K DGE+AGW TD LIARPL  RI
Sbjct: 574 KTDGEVAGWVTDSLIARPLPNRI 596

[Close]

BLAST of Csa3G254050 vs. TAIR10
Match: AT3G45890.1 (AT3G45890.1 Protein of unknown function, DUF647)

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-46
Identity = 85/138 (61.59%), Postives = 109/138 (78.99%), Query Frame = 1


Query: 10  LLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYCVMLKE 69
           +LS+EAK +AA+IE+RLQLGSKLSDV   +E+ + L  L+  E YIL+EH+G++CVMLKE
Sbjct: 455 VLSSEAKAAAADIEERLQLGSKLSDVIHNKEEAIALFDLYRNEGYILTEHKGRFCVMLKE 514

Query: 70  SASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHVKYDGE 129
           S++P DML+++F VNYL+WLE+NAGI   S  +DC+PGGRL +SL+YV REF+H K D E
Sbjct: 515 SSTPQDMLRSLFQVNYLYWLEKNAGIEPASTYSDCKPGGRLHISLDYVRREFEHAKEDSE 574

Query: 130 LAGWSTDGLIARPLTTRI 148
             GW T+GLIARPL TRI
Sbjct: 575 SVGWVTEGLIARPLPTRI 592

[Close]

BLAST of Csa3G254050 vs. NCBI nr
Match: gi|700202566|gb|KGN57699.1| (hypothetical protein Csa_3G254050 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 1.3e-81
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 1   MPIQEPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHR 60
           MPIQEPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHR
Sbjct: 1   MPIQEPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHR 60

Query: 61  GKYCVMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVERE 120
           GKYCVMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVERE
Sbjct: 61  GKYCVMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVERE 120

Query: 121 FKHVKYDGELAGWSTDGLIARPLTTRICECHVT 154
           FKHVKYDGELAGWSTDGLIARPLTTRICECHVT
Sbjct: 121 FKHVKYDGELAGWSTDGLIARPLTTRICECHVT 153

[Close]

BLAST of Csa3G254050 vs. NCBI nr
Match: gi|778680559|ref|XP_011651345.1| (PREDICTED: protein root UVB sensitive 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 3.5e-79
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


Query: 5   EPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYC 64
           EPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYC
Sbjct: 464 EPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYC 523

Query: 65  VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 124
           VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV
Sbjct: 524 VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 583

Query: 125 KYDGELAGWSTDGLIARPLTTRICECHVT 154
           KYDGELAGWSTDGLIARPLTTRICECHVT
Sbjct: 584 KYDGELAGWSTDGLIARPLTTRICECHVT 612

[Close]

BLAST of Csa3G254050 vs. NCBI nr
Match: gi|659098056|ref|XP_008449956.1| (PREDICTED: UPF0420 protein C16orf58 homolog [Cucumis melo])

HSP 1 Score: 293.9 bits (751), Expect = 1.6e-76
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 1


Query: 5   EPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYC 64
           EPKL LLSAEAKESAANI++RLQLGSKLSDVATCE DVLELLSLFNKENYILSEHRGKYC
Sbjct: 463 EPKLGLLSAEAKESAANIDQRLQLGSKLSDVATCEADVLELLSLFNKENYILSEHRGKYC 522

Query: 65  VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 124
           VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV
Sbjct: 523 VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 582

Query: 125 KYDGELAGWSTDGLIARPLTTRICECHVT 154
           KYDGELAGW TDGLIARPLTTRICECHVT
Sbjct: 583 KYDGELAGWLTDGLIARPLTTRICECHVT 611

[Close]

BLAST of Csa3G254050 vs. NCBI nr
Match: gi|460397757|ref|XP_004244433.1| (PREDICTED: protein root UVB sensitive 1, chloroplastic [Solanum lycopersicum])

HSP 1 Score: 206.1 bits (523), Expect = 4.5e-50
Identity = 98/143 (68.53%), Postives = 117/143 (81.82%), Query Frame = 1


Query: 5   EPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYC 64
           E +  +LS  AK++AA I +RLQLGSKLSDVAT +EDVL L  L+  E YIL+EH G++C
Sbjct: 451 ETQTEVLSVHAKQAAAGIVRRLQLGSKLSDVATSQEDVLALFELYKNEGYILTEHEGRFC 510

Query: 65  VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 124
           ++LKES+SP DMLK++FHVNYL+WLE NAGI + S +NDCRPGGRLQMSLEYVEREF HV
Sbjct: 511 IVLKESSSPQDMLKSLFHVNYLYWLETNAGIKSSSVANDCRPGGRLQMSLEYVEREFNHV 570

Query: 125 KYDGELAGWSTDGLIARPLTTRI 148
           K DGE+AGW TD LIARPL  RI
Sbjct: 571 KTDGEVAGWVTDSLIARPLPVRI 593

[Close]

BLAST of Csa3G254050 vs. NCBI nr
Match: gi|970048616|ref|XP_015085810.1| (PREDICTED: protein root UVB sensitive 1, chloroplastic [Solanum pennellii])

HSP 1 Score: 205.3 bits (521), Expect = 7.7e-50
Identity = 98/143 (68.53%), Postives = 117/143 (81.82%), Query Frame = 1


Query: 5   EPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYC 64
           E +  +LS  AK++AA I +RLQLGSKLSDVAT +EDVL L  L+  E YIL+EH G++C
Sbjct: 454 ETQTEVLSVHAKQAAAGILRRLQLGSKLSDVATSQEDVLALFELYKNEGYILTEHEGRFC 513

Query: 65  VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 124
           ++LKES+SP DMLK++FHVNYL+WLE NAGI + S +NDCRPGGRLQMSLEYVEREF HV
Sbjct: 514 IVLKESSSPQDMLKSLFHVNYLYWLETNAGIKSSSVANDCRPGGRLQMSLEYVEREFNHV 573

Query: 125 KYDGELAGWSTDGLIARPLTTRI 148
           K DGE+AGW TD LIARPL  RI
Sbjct: 574 KTDGEVAGWVTDSLIARPLPIRI 596

The following BLAST results are available for this feature:

BLAST of Csa3G254050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RUS1_ARATH	4.4e-45	61.59	Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana GN=RUS1 PE=1...	[more]

BLAST of Csa3G254050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9N6_CUCSA	9.0e-82	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G254050 PE=4 SV=1	[more]
A0A0V0ISL3_SOLCH	4.8e-51	69.23	Putative UPF0420 protein C16orf58-like OS=Solanum chacoense PE=4 SV=1	[more]
K4CI48_SOLLC	3.1e-50	68.53	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1BL00_SOLTU	1.2e-49	67.83	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018482 PE=4 SV=1	[more]
M1BL01_SOLTU	1.2e-49	67.83	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018482 PE=4 SV=1	[more]

BLAST of Csa3G254050 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45890.1	2.5e-46	61.59	Protein of unknown function, DUF647	[more]

BLAST of Csa3G254050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202566\|gb\|KGN57699.1\|	1.3e-81	100.00	hypothetical protein Csa_3G254050 [Cucumis sativus]	[more]
gi\|778680559\|ref\|XP_011651345.1\|	3.5e-79	100.00	PREDICTED: protein root UVB sensitive 1, chloroplastic [Cucumis sativus]	[more]
gi\|659098056\|ref\|XP_008449956.1\|	1.6e-76	96.64	PREDICTED: UPF0420 protein C16orf58 homolog [Cucumis melo]	[more]
gi\|460397757\|ref\|XP_004244433.1\|	4.5e-50	68.53	PREDICTED: protein root UVB sensitive 1, chloroplastic [Solanum lycopersicum]	[more]
gi\|970048616\|ref\|XP_015085810.1\|	7.7e-50	68.53	PREDICTED: protein root UVB sensitive 1, chloroplastic [Solanum pennellii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006968	RUS_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0010224	response to UV-B
biological_process	GO:0008150	biological_process
biological_process	GO:0007155	cell adhesion
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009536	plastid
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0005540	hyaluronic acid binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU133816	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G254050.1	Csa3G254050.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU133816	CU133816	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006968	Root UVB sensitive family	PANTHER	PTHR12770	FAMILY NOT NAMED	coord: 9..149 score: 9.6
None	No IPR available	PANTHER	PTHR12770:SF7	PROTEIN ROOT UVB SENSITIVE 1	coord: 9..149 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G254050	Cla007128	Watermelon (97103) v1	cuwmB236
Csa3G254050	MELO3C014739	Melon (DHL92) v3.5.1	cumeB249
Csa3G254050	ClCG05G012170	Watermelon (Charleston Gray)	cuwcgB225
Csa3G254050	Lsi05G004180	Bottle gourd (USVL1VR-Ls)	culsiB212
Csa3G254050	MELO3C014739.2	Melon (DHL92) v3.6.1	cumedB230
Csa3G254050	Cla97C05G094070	Watermelon (97103) v2	cuwmbB207
Csa3G254050	CSPI03G20170	Wild cucumber (PI 183967)	cpicuB120
Csa3G254050	Cucsa.031860	Cucumber (Gy14) v1	cgycuB003
Csa3G254050	CmaCh14G007870	Cucurbita maxima (Rimu)	cmacuB242
Csa3G254050	CmoCh14G008010	Cucurbita moschata (Rifu)	cmocuB229
Csa3G254050	Cp4.1LG03g06320	Cucurbita pepo (Zucchini)	cpecuB600
Csa3G254050	CsGy3G019970	Cucumber (Gy14) v2	cgybcuB109
Csa3G254050	Carg22296	Silver-seed gourd	carcuB0513

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G254050	Watermelon (97103) v2	cuwmbB218
Csa3G254050	Wax gourd	cuwgoB291
Csa3G254050	Watermelon (Charleston Gray)	cuwcgB233
Csa3G254050	Watermelon (97103) v1	cuwmB247