Carg22296 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22296
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein root UVB sensitive 1, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_164 : 235480 .. 239152 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGCAAGTCTATTGGTATGTTGCTTGGCATTGCATTGGCTAATCGTATAAGGTCCTCAACATCTCTTGCTCTTGGTTGCTTTAGCGTAGTGACCATAATCCACATGTTCTGCAATCTAAAATCATACAAGTCCATTCAACTAAGGACATTAAATCCTTATCGTGCAAGTAAGTTCTCTTTCCTTCTATATGCATCTCTTTTTTCTTTTTTTGGAATGATTTTGATTTTTTCTAAGAGAAAGGGGACTTCTTATTGAAGAAATGAAAAGAGACTAATGCTCAAAATTACAAACTTCACTAGGGGAAAAAACAGAACAGAAATAAAGAAAGAGGAAAGTTAGATAGCTAGGTAACATAACAAGACAAAGATCAAATAATGATAGGCGGAGATTAAAACTTTATCAATTAAGGCAAATGCCTTGCAAAGAGAACCCTTGAAAAAATTTGGAGAGAGCACCAATGAGAAGCTTTTAGCTTGGCTGCCTCAAAAAGCACCAACCAATTTCTTAACTTGTTTTCAAAAATCCTTTGATTAGGTTCCCACCAAAGCTCAGAGAAAGAACTGCTTTAATCACATTGGCCCACGAAAGAAAAGATTTAGACGGAAGACAAGGACCAATGAGTGAGTGTATAGTATTACACTAAGAATCTATGTGCAAGACCCAATGAATGCTGGATATATCAAAGAGTTTATGCCAACGGGATAAGGCAAAGGTGCAATCAAATGGACCGCCACCTTTCTCCAAAGAGTATTGTGTTCATTCCCAAAATGCTAACCCCATTTTGCCAATGAGGCAATGTTCCGGAATTTCAATCTACCAGTTTCTAATCCTCCATCTGTAAGGAATTTAGAAGCCAAGTTCCACCCAACAAGATGATTGATCTTACCACCATTGTTTCTTCCCAGAAAAAGTTTCGAATATTTCTTTCAAGCTCTAAAAAGATATTTGATGGCCTAAGGAAGAGGGACATGTAATAGGAATACCAGACAACACTGAACTACAAAGAGTAAGCCTGCCTCCCCTTGACAGTTAAAAACGTTTCCAATGATCCAATTTCTTCATAATTTTCTCCATAATGAATGACCTAAAAGTAGTATGCTTTGAATGGCTTTCAAGTGGAAGACCCAAATCTAGAAAGGGTGAAGTGTCTGCCTTAACATTAAGCTTTGCAGACACTGAAGAATCCATTGAGGAGTCGATATTGACACCACATACAGCTGATTTAAATGGTAGTGTTTGGATTTTCGGGTTGATGAGATGCATATGTACTGGTTTATTACATTCTTACTATCACAGTATATTATGGTGATCGGCTTGCTAGGTAGTATGTTAATTAATCCCTACTGCACCAACACCCTTGCATTTCTTGAGGGAACTTTTTGAAACAAACAGAGACACCCTCATTTCTCTCCTCCTCCCAAAACCACTACCAAACATTTTTTTAAAAAATTTTGAAATGTGAACCTGATCTTTTAGTGGTAAACTTACCTTAAATGTTCAACAGGTTTGGTCTTCAGTGAATATCTTTTGAGTGGTGAAGTGCCTTCTATTAAAGATGTGAACAATGAAGAACCTCTGTTTCCTGCTGTACCATTTCTTAATACAAGGCTTGCTTGTGATGTGAGTGACTTTCTTTTCTAATGTTATTTATTATTCTATTACTTCTTAATTTTTCTTTTCAAATGTGAACTGTGTTCATTTTTACTAATATACAAATGCAATGAAAGCAATGTTGGAGTTTTGTTGGATAATGAATTGCCTCCCGTTGGTTTGAGGTCAGCTTTAATCAAAGGAGTTTCTCATTCAACTAAAGACCCTTCTTCCCCTCGATCTTATTCTCTTTCATGTGTGGATGAATTTGATGTGGATTCTGAAGTCAGTTTGAGCAGCTTGGAACGTGATTGCAACCATGGTGTAACGACTTAAATGATATGCTCGACGAAGCTTTATTTATTAATTTCCTAGGATTGTGAAAAGTAGCTCCTCATTCTATTCCACATTCAGAACCTACCAAATTTTCATCCTTCGTTGAAATTTGTGGTTTTCAGTTTAGATAAACTCCCCTTTTCATTTAAGAAGCGGCTTGAATAAACCAAGAGGGAGGTTTCAAACTTTTGGTTAGATGGATTTTAGTTCAAAAATCTCCAAGGGATGGAGATTTAGGACTTGGAGCTTTGAAGTTCAGGATTATGATCCTTATTGTCAAATGAGTTTTAAATTTTTTGCTTAAGTTTATAGCTATAGCCTCCATGATTCTGAAGTTTTTGTTTGGCCTTTTCCTGGAAGAAACGTTTCAAGTCTTGTAGTCCTTGGAAAGGCAAAGTGACAATCAATGAGATTACCTTTTTCTATTATTTGCAAATGTTCGTACTCGCAGTTTTTGAAGTCTGATCAGCAACCAAGCTGGATGATGGTGCTATGTCTGTTGCTATGAAGTATTTAGTTCTTAGAATTAACCATTCATATTTTTCTGCATGTTGGAACAGTATTCTTTTTGTTTGGCTCAATGTTGGATAGATGCCTCTATAGCTGTTCATATTCCAATCGATTAACTGACTTTTGTAATTTTCTTGTTTTAATAAGGAGCCAAAAGTGGGTTTACTATCTACTGAAGCAAAGGAATCAGCAGCTAATATCGAAAAGCGACTGCAATTGGGATCTAAGCTCAGTGACGTGGCGAGGTGTGAGGAGGACGTTCTTCAACTTTTAAGTTTGTATAAAAATGAAAACTACATTCTGTCGGAGCACAGGGGAAGATATTGTGTAAGTAATCTAAACTATATTTCCAATGTGTGCATTCTTGTGGAGTATGGAGCTTTCTTCTCCCAGTCAAAAGTACTTGATTTGAAGCTTTACACCGTTATTTTCGTTGAAGTATCCGTGTTGTCTAATTCTATCAACGAACACTAGGAAACTTTCTTCCATAAACAACTATAGTGCTGTTCGTTTCCTTATTGTGAGATCCCACATCGGTTGGAGAGGAGAATGAAACATTCTTTATAAGAGTGTGGAAACCTCTCCCTAGCAGACGGTTTTAAAAACCTTGAGGGGAAACCCGAAAGGGAAAGCCCAAAGAGGACAATATCTACTAGCAGCGGGTTTCACATCGGTTGGAGAGGAGAACGAAGCATTCTTTGTAAGGGTGTGGAAACCTCTCCCTAATAGGCGTGTTTTAAAAACCTTGAGGGGAAGTCCAAAAGGGAAAGCCCAAAGAGGACAACATCTGCTAGCAGTGGGCTTCACATCGGTTAGGGAGGAGAACGAAGCATTCTTTGTAAGGGTGTGGAAACCTCTCTCTAGCAGACACGTTTTAAAAACCTTGAAGGAAAACTCGAAAGGGAAAGTCTAAAGAAGACAATATCTACCAGCGGTGGGCTTGAATTGTTGACTAGTATTCGTTAATTTGGTTCGTGCTAGAGTATCGCCATTAAACTAAAATGTTCGTGGGAATCTTATGGATGTGCAGGTGATGCTTAAAGAAAGTGCTTTACCAAAAGACATGCTGAAGGCATTGTTTCACGTGAACTACTTGCACTGGCTAGAGAGGAATGCGGGAATAGAAGCAAGAAGTGCGGCCAATGACTGCAAACCAGGGGGAAGGCTGCAGATATCTCTGGAGTATGTGGAGAGGGAATTCATTCATGTCAAATATGATGGGGAATTGGCA

mRNA sequence

ATGGTGAGCAAGTCTATTGGTATGTTGCTTGGCATTGCATTGGCTAATCGTATAAGGTCCTCAACATCTCTTGCTCTTGGTTGCTTTAGCGTAGTGACCATAATCCACATGTTCTGCAATCTAAAATCATACAAGTCCATTCAACTAAGGACATTAAATCCTTATCGTGCAAGTTTGGTCTTCAGTGAATATCTTTTGAGTGGTGAAGTGCCTTCTATTAAAGATGTGAACAATGAAGAACCTCTGTTTCCTGCTGTACCATTTCTTAATACAAGGCTTGCTTGTGATGAGCCAAAAGTGGGTTTACTATCTACTGAAGCAAAGGAATCAGCAGCTAATATCGAAAAGCGACTGCAATTGGGATCTAAGCTCAGTGACGTGGCGAGGTGTGAGGAGGACGTTCTTCAACTTTTAAGTTTGTATAAAAATGAAAACTACATTCTGTCGGAGCACAGGGGAAGATATTGTGCATTGTTTCACGTGAACTACTTGCACTGGCTAGAGAGGAATGCGGGAATAGAAGCAAGAAGTGCGGCCAATGACTGCAAACCAGGGGGAAGGCTGCAGATATCTCTGGAGTATGTGGAGAGGGAATTCATTCATGTCAAATATGATGGGGAATTGGCA

Coding sequence (CDS)

ATGGTGAGCAAGTCTATTGGTATGTTGCTTGGCATTGCATTGGCTAATCGTATAAGGTCCTCAACATCTCTTGCTCTTGGTTGCTTTAGCGTAGTGACCATAATCCACATGTTCTGCAATCTAAAATCATACAAGTCCATTCAACTAAGGACATTAAATCCTTATCGTGCAAGTTTGGTCTTCAGTGAATATCTTTTGAGTGGTGAAGTGCCTTCTATTAAAGATGTGAACAATGAAGAACCTCTGTTTCCTGCTGTACCATTTCTTAATACAAGGCTTGCTTGTGATGAGCCAAAAGTGGGTTTACTATCTACTGAAGCAAAGGAATCAGCAGCTAATATCGAAAAGCGACTGCAATTGGGATCTAAGCTCAGTGACGTGGCGAGGTGTGAGGAGGACGTTCTTCAACTTTTAAGTTTGTATAAAAATGAAAACTACATTCTGTCGGAGCACAGGGGAAGATATTGTGCATTGTTTCACGTGAACTACTTGCACTGGCTAGAGAGGAATGCGGGAATAGAAGCAAGAAGTGCGGCCAATGACTGCAAACCAGGGGGAAGGCTGCAGATATCTCTGGAGTATGTGGAGAGGGAATTCATTCATGTCAAATATGATGGGGAATTGGCA

Protein sequence

MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLVFSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQLGSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYCALFHVNYLHWLERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA

Homology

[Close]

BLAST of Carg22296 vs. NCBI nr
Match: XP_022934442.1 (protein root UVB sensitive 1, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 404.1 bits (1037), Expect = 3.0e-109
Identity = 209/223 (93.72%), Postives = 209/223 (93.72%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV
Sbjct: 365 MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 424

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL 120
           FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL
Sbjct: 425 FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL 484

Query: 121 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC--------------ALFHVNYLHW 180
           GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC              ALFHVNYLHW
Sbjct: 485 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYCVMLKESALPKDMLKALFHVNYLHW 544

Query: 181 LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA 210
           LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA
Sbjct: 545 LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA 587

[Close]

BLAST of Carg22296 vs. NCBI nr
Match: XP_023528607.1 (protein root UVB sensitive 1, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.7 bits (1031), Expect = 1.5e-108
Identity = 207/223 (92.83%), Postives = 209/223 (93.72%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSKSIGMLLGIALANRIRSSTSLALGCFSVVT+IHMFCNLKSYKSIQLRTLNPYRASLV
Sbjct: 389 MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTVIHMFCNLKSYKSIQLRTLNPYRASLV 448

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL 120
           FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAA+IEKRLQL
Sbjct: 449 FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAASIEKRLQL 508

Query: 121 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC--------------ALFHVNYLHW 180
           GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC              ALFHVNYLHW
Sbjct: 509 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYCVMLKESALPKDMLKALFHVNYLHW 568

Query: 181 LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA 210
           LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA
Sbjct: 569 LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA 611

[Close]

BLAST of Carg22296 vs. NCBI nr
Match: XP_022934441.1 (protein root UVB sensitive 1, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 399.4 bits (1025), Expect = 7.3e-108
Identity = 209/224 (93.30%), Postives = 209/224 (93.30%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV
Sbjct: 365 MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 424

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACD-EPKVGLLSTEAKESAANIEKRLQ 120
           FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACD EPKVGLLSTEAKESAANIEKRLQ
Sbjct: 425 FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDKEPKVGLLSTEAKESAANIEKRLQ 484

Query: 121 LGSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC--------------ALFHVNYLH 180
           LGSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC              ALFHVNYLH
Sbjct: 485 LGSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYCVMLKESALPKDMLKALFHVNYLH 544

Query: 181 WLERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA 210
           WLERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA
Sbjct: 545 WLERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA 588

[Close]

BLAST of Carg22296 vs. NCBI nr
Match: XP_023528606.1 (protein root UVB sensitive 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397.1 bits (1019), Expect = 3.6e-107
Identity = 207/224 (92.41%), Postives = 209/224 (93.30%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSKSIGMLLGIALANRIRSSTSLALGCFSVVT+IHMFCNLKSYKSIQLRTLNPYRASLV
Sbjct: 389 MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTVIHMFCNLKSYKSIQLRTLNPYRASLV 448

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACD-EPKVGLLSTEAKESAANIEKRLQ 120
           FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACD EPKVGLLSTEAKESAA+IEKRLQ
Sbjct: 449 FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDKEPKVGLLSTEAKESAASIEKRLQ 508

Query: 121 LGSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC--------------ALFHVNYLH 180
           LGSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC              ALFHVNYLH
Sbjct: 509 LGSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYCVMLKESALPKDMLKALFHVNYLH 568

Query: 181 WLERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA 210
           WLERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA
Sbjct: 569 WLERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA 612

[Close]

BLAST of Carg22296 vs. NCBI nr
Match: XP_022983514.1 (protein root UVB sensitive 1, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 392.9 bits (1008), Expect = 6.8e-106
Identity = 202/223 (90.58%), Postives = 208/223 (93.27%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSKSIGMLLGIALANRIRSSTSLALGCFSVVT+IHMFCNLKSYKSIQLRTLNPYRASLV
Sbjct: 365 MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTLIHMFCNLKSYKSIQLRTLNPYRASLV 424

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL 120
           FSEYLLSGEVPSIK+VN+EEPLFPAVPFLN RLACDEPKVGLLSTEAKESAANIE+RLQL
Sbjct: 425 FSEYLLSGEVPSIKNVNDEEPLFPAVPFLNARLACDEPKVGLLSTEAKESAANIERRLQL 484

Query: 121 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC--------------ALFHVNYLHW 180
           GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC              ALFHVNYLHW
Sbjct: 485 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYCVMLKESALPKDMLKALFHVNYLHW 544

Query: 181 LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA 210
           LERNAGIEARSAA+DC+PGGRLQISLEYVEREFIHVKYDGELA
Sbjct: 545 LERNAGIEARSAASDCQPGGRLQISLEYVEREFIHVKYDGELA 587

[Close]

BLAST of Carg22296 vs. TAIR10
Match: AT3G45890.1 (Protein of unknown function, DUF647)

HSP 1 Score: 255.8 bits (652), Expect = 2.4e-68
Identity = 135/221 (61.09%), Postives = 167/221 (75.57%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSKS+G+LLGI +AN I +STSLAL  F VVT IHM+ NLKSY+ IQLRTLNPYRASLV
Sbjct: 355 MVSKSVGILLGIVVANCIGTSTSLALAAFGVVTTIHMYTNLKSYQCIQLRTLNPYRASLV 414

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL 120
           FSEYL+SG+ P IK+VN+EEPLFP V F N + + ++ +  +LS+EAK +AA+IE+RLQL
Sbjct: 415 FSEYLISGQAPLIKEVNDEEPLFPTVRFSNMK-SPEKLQDFVLSSEAKAAAADIEERLQL 474

Query: 121 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC--------------ALFHVNYLHW 180
           GSKLSDV   +E+ + L  LY+NE YIL+EH+GR+C              +LF VNYL+W
Sbjct: 475 GSKLSDVIHNKEEAIALFDLYRNEGYILTEHKGRFCVMLKESSTPQDMLRSLFQVNYLYW 534

Query: 181 LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGE 208
           LE+NAGIE  S  +DCKPGGRL ISL+YV REF H K D E
Sbjct: 535 LEKNAGIEPASTYSDCKPGGRLHISLDYVRREFEHAKEDSE 574

[Close]

BLAST of Carg22296 vs. TAIR10
Match: AT1G13770.1 (Protein of unknown function, DUF647)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-09
Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 0


Query: 6   IGMLLGIALANRIRSSTSLALG-CFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLVFSEY 65
           +GM LG+ LA R  S   +A+   F  +T+ HM+ N ++ + + L +LN  R+S++ + +
Sbjct: 221 MGMSLGMLLA-RFTSGNPMAIWLSFLSLTVFHMYANYRAVRCLVLNSLNFERSSILLTHF 280

Query: 66  LLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQLGSKL 125
           + +G+V S + V++ E + P                 L ST +K     + KR+QLG ++
Sbjct: 281 IQTGQVLSPEQVSSMEGVLPLW------------ATSLRSTNSKP----LHKRVQLGVRV 340

Query: 126 SDVARCEEDVLQLL-----SLYKNENYILSEHRGRYCALFH 161
           S + R   D+LQLL     S YKN  Y+L+  +G    + H
Sbjct: 341 SSLPRL--DMLQLLNGVGASSYKNAKYLLAHIKGNVSVILH 362

[Close]

BLAST of Carg22296 vs. TAIR10
Match: AT2G31190.1 (Protein of unknown function, DUF647)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-06
Identity = 28/82 (34.15%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 7   GMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLVFSEYLL 66
           G+  GI LA+ I SS    L   S+++++H++  ++  + + + TLNP R +L+ + +L 
Sbjct: 233 GIGAGIQLASTICSSMEGKLVVGSILSVVHVYSVVEQMRGVPINTLNPQRTALIVANFLK 292

Query: 67  SGEVPSIKDVNNEEPL-FPAVP 88
           +G+VPS  D+  +E L FP  P
Sbjct: 293 TGKVPSPPDLRFQEDLMFPERP 314

[Close]

BLAST of Carg22296 vs. Swiss-Prot
Match: sp|Q7X6P3|RUS1_ARATH (Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RUS1 PE=1 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.3e-67
Identity = 135/221 (61.09%), Postives = 167/221 (75.57%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSKS+G+LLGI +AN I +STSLAL  F VVT IHM+ NLKSY+ IQLRTLNPYRASLV
Sbjct: 355 MVSKSVGILLGIVVANCIGTSTSLALAAFGVVTTIHMYTNLKSYQCIQLRTLNPYRASLV 414

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL 120
           FSEYL+SG+ P IK+VN+EEPLFP V F N + + ++ +  +LS+EAK +AA+IE+RLQL
Sbjct: 415 FSEYLISGQAPLIKEVNDEEPLFPTVRFSNMK-SPEKLQDFVLSSEAKAAAADIEERLQL 474

Query: 121 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC--------------ALFHVNYLHW 180
           GSKLSDV   +E+ + L  LY+NE YIL+EH+GR+C              +LF VNYL+W
Sbjct: 475 GSKLSDVIHNKEEAIALFDLYRNEGYILTEHKGRFCVMLKESSTPQDMLRSLFQVNYLYW 534

Query: 181 LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGE 208
           LE+NAGIE  S  +DCKPGGRL ISL+YV REF H K D E
Sbjct: 535 LEKNAGIEPASTYSDCKPGGRLHISLDYVRREFEHAKEDSE 574

[Close]

BLAST of Carg22296 vs. Swiss-Prot
Match: sp|Q84JB8|RUS3_ARATH (Protein root UVB sensitive 3 OS=Arabidopsis thaliana OX=3702 GN=RUS3 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-08
Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 0


Query: 6   IGMLLGIALANRIRSSTSLALG-CFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLVFSEY 65
           +GM LG+ LA R  S   +A+   F  +T+ HM+ N ++ + + L +LN  R+S++ + +
Sbjct: 221 MGMSLGMLLA-RFTSGNPMAIWLSFLSLTVFHMYANYRAVRCLVLNSLNFERSSILLTHF 280

Query: 66  LLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQLGSKL 125
           + +G+V S + V++ E + P                 L ST +K     + KR+QLG ++
Sbjct: 281 IQTGQVLSPEQVSSMEGVLPLW------------ATSLRSTNSKP----LHKRVQLGVRV 340

Query: 126 SDVARCEEDVLQLL-----SLYKNENYILSEHRGRYCALFH 161
           S + R   D+LQLL     S YKN  Y+L+  +G    + H
Sbjct: 341 SSLPRL--DMLQLLNGVGASSYKNAKYLLAHIKGNVSVILH 362

[Close]

BLAST of Carg22296 vs. Swiss-Prot
Match: sp|Q91W34|RUS1_MOUSE (RUS1 family protein C16orf58 homolog OS=Mus musculus OX=10090 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-06
Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 7   GMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLVFSEYLL 66
           G+L+ + +   +    SL+LGCF ++T +H++ N ++ +++ L TLN  R  LV   +L 
Sbjct: 240 GLLVSLLMLPLVSDCPSLSLGCFVLLTALHIYANYRAVRALVLETLNESRLQLVLEHFLQ 299

Query: 67  SGEVPSIKDVNNEEPLF 84
            GEV      N  EPL+
Sbjct: 300 RGEVLEPASANQMEPLW 316

[Close]

BLAST of Carg22296 vs. Swiss-Prot
Match: sp|Q499P8|RUS1_RAT (RUS1 family protein C16orf58 homolog OS=Rattus norvegicus OX=10116 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-06
Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 7   GMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLVFSEYLL 66
           G+L+ + +   +    SL+LGCF ++T +H++ N ++ +++ L TLN  R  LV   +L 
Sbjct: 240 GLLVSLLMLPLVSDCLSLSLGCFILLTALHIYANYRAVRALVLETLNESRLQLVLKHFLQ 299

Query: 67  SGEVPSIKDVNNEEPLF 84
            GEV      N  EPL+
Sbjct: 300 RGEVLEPASANQMEPLW 316

[Close]

BLAST of Carg22296 vs. Swiss-Prot
Match: sp|Q86K80|RUS1_DICDI (RUS1 family protein homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0277179 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-06
Identity = 27/91 (29.67%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 6   IGMLLGIALANRIRSSTSLALG--CFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLVFSE 65
           +GMLL + +++ I  +TSL +    F   T +H+FCN ++  ++QL+++N YRA L++  
Sbjct: 228 VGMLLSVIVSSFINDNTSLIVTWLVFLFFTSLHLFCNYRAVSAVQLKSINRYRAYLIYDY 287

Query: 66  YLLS-GEVPSIKDVNNEEPLFPAVPFLNTRL 94
           ++ + G +PS  +++  E +  ++  L+ R+
Sbjct: 288 FIHNQGSIPSPSEISKLENILFSIKELDIRV 318

[Close]

BLAST of Carg22296 vs. TrEMBL
Match: tr|A0A1S3BP56|A0A1S3BP56_CUCME (protein root UVB sensitive 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491686 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 4.3e-96
Identity = 182/223 (81.61%), Postives = 196/223 (87.89%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSKSIGM+LGI LAN IRSSTSLALGCFS+VT+IHMF NLKSYKSIQLRTLNPYRASLV
Sbjct: 367 MVSKSIGMMLGITLANHIRSSTSLALGCFSIVTLIHMFSNLKSYKSIQLRTLNPYRASLV 426

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL 120
           FSEYL SGEVPSIK+VNNEEPLFPAVP LNTRL CDEPK+GLLS EAKESAANI++RLQL
Sbjct: 427 FSEYLFSGEVPSIKEVNNEEPLFPAVPLLNTRLGCDEPKLGLLSAEAKESAANIDQRLQL 486

Query: 121 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC--------------ALFHVNYLHW 180
           GSKLSDVA CE DVL+LLSL+  ENYILSEHRG+YC              A+FHVNYLHW
Sbjct: 487 GSKLSDVATCEADVLELLSLFNKENYILSEHRGKYCVMLKESASPVDMLKAVFHVNYLHW 546

Query: 181 LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA 210
           LERNAGI ARSA+NDC+PGGRLQ+SLEYVEREF HVKYDGELA
Sbjct: 547 LERNAGITARSASNDCRPGGRLQMSLEYVEREFKHVKYDGELA 589

[Close]

BLAST of Carg22296 vs. TrEMBL
Match: tr|A0A061G851|A0A061G851_THECC (Uncharacterized protein isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_016682 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 8.3e-76
Identity = 147/207 (71.01%), Postives = 177/207 (85.51%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSKSIG++LGIALAN + SSTSLAL  F VVT +HM+CNLKSY+SIQLRTLN YRASLV
Sbjct: 343 MVSKSIGIVLGIALANCVGSSTSLALASFGVVTWVHMYCNLKSYQSIQLRTLNSYRASLV 402

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL 120
           FSEYLLSG+ PSIK+VN+EEPLFPAVPFLN  L+ +  +  +LS+EAK++AA+IE+RLQL
Sbjct: 403 FSEYLLSGQAPSIKEVNDEEPLFPAVPFLNL-LSANRERSVVLSSEAKQAAADIERRLQL 462

Query: 121 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYCALFHVNYLHWLERNAGIEARSAAN 180
           GSKLSD+   +ED L L SLYK+E YIL+EH G++C+LF VNYL+WLERNAGIEA  A+ 
Sbjct: 463 GSKLSDIVNNKEDALALFSLYKDEGYILTEHEGKFCSLFQVNYLYWLERNAGIEASGAST 522

Query: 181 DCKPGGRLQISLEYVEREFIHVKYDGE 208
           DC+PGGRLQIS+EYV+REF HVK D E
Sbjct: 523 DCRPGGRLQISVEYVQREFNHVKIDSE 548

[Close]

BLAST of Carg22296 vs. TrEMBL
Match: tr|A0A251R823|A0A251R823_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G352800 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 4.1e-75
Identity = 150/221 (67.87%), Postives = 177/221 (80.09%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSKS+G++LGIALAN I SST L L  FS+VT IHMFCNLKSY+SIQ+RTLNPYRASLV
Sbjct: 354 MVSKSVGIMLGIALANHIGSSTFLGLASFSIVTWIHMFCNLKSYQSIQIRTLNPYRASLV 413

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL 120
           FSEYLLSG+ PS+K+VN EEPLFPAVPFLN + A ++ +  +LS+EAK++A  IE RLQL
Sbjct: 414 FSEYLLSGQAPSVKEVNEEEPLFPAVPFLNLKPA-NQVQSTVLSSEAKDAAVEIEHRLQL 473

Query: 121 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC--------------ALFHVNYLHW 180
           GSKLSD+   +EDVL LLSLYK+E YI +EH+GR+C              ALFHVNYL+W
Sbjct: 474 GSKLSDLVNSKEDVLALLSLYKDEGYIFTEHKGRFCVVLKETSSLQDMLRALFHVNYLYW 533

Query: 181 LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGE 208
           LE+NAG EAR  + DCKPGGRLQISLEYV+REF HVK DGE
Sbjct: 534 LEKNAGYEARGTSADCKPGGRLQISLEYVQREFNHVKNDGE 573

[Close]

BLAST of Carg22296 vs. TrEMBL
Match: tr|A0A2P6PZJ1|A0A2P6PZJ1_ROSCH (Putative Root UVB sensitive family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0304441 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.0e-73
Identity = 149/223 (66.82%), Postives = 176/223 (78.92%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSK IG++LGIALAN+I SSTSL L  FSVVT IHMFCNLKSY++IQ+RTLNPYRASLV
Sbjct: 352 MVSKFIGIMLGIALANQIGSSTSLGLASFSVVTCIHMFCNLKSYQAIQIRTLNPYRASLV 411

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL 120
           FSEYLLSG+ P +K+VN EEPLFPAVPFLN + A   P   +LS+EAK++AA IE+RLQL
Sbjct: 412 FSEYLLSGQAPPVKEVNEEEPLFPAVPFLNWKPANRAPPT-ILSSEAKDAAAEIEQRLQL 471

Query: 121 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC--------------ALFHVNYLHW 180
           GSKLSD+   +EDVL L SL+K E YIL+EHRGRYC              ALFHVNYL+W
Sbjct: 472 GSKLSDLINNKEDVLALFSLFKEEGYILTEHRGRYCVVLKETSSLQDMLKALFHVNYLYW 531

Query: 181 LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGELA 210
           LE+NAG EA+  + DC+PGGRL++SL+YV REF HVK DGE A
Sbjct: 532 LEKNAGYEAKGTSIDCRPGGRLEMSLDYVRREFDHVKTDGESA 573

[Close]

BLAST of Carg22296 vs. TrEMBL
Match: tr|A0A1R3K8V8|A0A1R3K8V8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10363 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.3e-73
Identity = 151/221 (68.33%), Postives = 175/221 (79.19%), Query Frame = 0


Query: 1   MVSKSIGMLLGIALANRIRSSTSLALGCFSVVTIIHMFCNLKSYKSIQLRTLNPYRASLV 60
           MVSKSIG+ LGIALAN I +STSL+L  F VVT IHM+CNLKSY+SIQLRTLNPYRASLV
Sbjct: 297 MVSKSIGIALGIALANCIGTSTSLSLATFGVVTWIHMYCNLKSYQSIQLRTLNPYRASLV 356

Query: 61  FSEYLLSGEVPSIKDVNNEEPLFPAVPFLNTRLACDEPKVGLLSTEAKESAANIEKRLQL 120
           FSEYLLSG+ PSIK+VN+EEPLFPAVPFLN   A  E  V +LS+EAK++AA IE+RL L
Sbjct: 357 FSEYLLSGQAPSIKEVNDEEPLFPAVPFLNILSANREQSV-VLSSEAKQAAAQIERRLLL 416

Query: 121 GSKLSDVARCEEDVLQLLSLYKNENYILSEHRGRYC--------------ALFHVNYLHW 180
           GSKLSD+   +ED L L SLYK+E YIL+E  G+YC              +LFHVNYL+W
Sbjct: 417 GSKLSDIVNNKEDTLALFSLYKDEGYILTEKEGKYCVVLKESSSPQDMLKSLFHVNYLYW 476

Query: 181 LERNAGIEARSAANDCKPGGRLQISLEYVEREFIHVKYDGE 208
           LERNAG+EA  A+ DCKPGGRLQIS+EYV+REF HVK DGE
Sbjct: 477 LERNAGVEASGASTDCKPGGRLQISVEYVQREFNHVKIDGE 516

The following BLAST results are available for this feature:

BLAST of Carg22296 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934442.1	3.0e-109	93.72	protein root UVB sensitive 1, chloroplastic isoform X2 [Cucurbita moschata]	[more]
XP_023528607.1	1.5e-108	92.83	protein root UVB sensitive 1, chloroplastic isoform X2 [Cucurbita pepo subsp. pe...	[more]
XP_022934441.1	7.3e-108	93.30	protein root UVB sensitive 1, chloroplastic isoform X1 [Cucurbita moschata]	[more]
XP_023528606.1	3.6e-107	92.41	protein root UVB sensitive 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pe...	[more]
XP_022983514.1	6.8e-106	90.58	protein root UVB sensitive 1, chloroplastic isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg22296 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45890.1	2.4e-68	61.09	Protein of unknown function, DUF647	[more]
AT1G13770.1	1.5e-09	30.43	Protein of unknown function, DUF647	[more]
AT2G31190.1	1.5e-06	34.15	Protein of unknown function, DUF647	[more]

BLAST of Carg22296 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7X6P3\|RUS1_ARATH	4.3e-67	61.09	Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
sp\|Q84JB8\|RUS3_ARATH	2.6e-08	30.43	Protein root UVB sensitive 3 OS=Arabidopsis thaliana OX=3702 GN=RUS3 PE=2 SV=1	[more]
sp\|Q91W34\|RUS1_MOUSE	1.9e-06	33.77	RUS1 family protein C16orf58 homolog OS=Mus musculus OX=10090 PE=1 SV=1	[more]
sp\|Q499P8\|RUS1_RAT	1.9e-06	33.77	RUS1 family protein C16orf58 homolog OS=Rattus norvegicus OX=10116 PE=2 SV=1	[more]
sp\|Q86K80\|RUS1_DICDI	4.2e-06	29.67	RUS1 family protein homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0277179...	[more]

BLAST of Carg22296 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BP56\|A0A1S3BP56_CUCME	4.3e-96	81.61	protein root UVB sensitive 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A061G851\|A0A061G851_THECC	8.3e-76	71.01	Uncharacterized protein isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_016682 PE=4 ...	[more]
tr\|A0A251R823\|A0A251R823_PRUPE	4.1e-75	67.87	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G352800 PE=4 SV=1	[more]
tr\|A0A2P6PZJ1\|A0A2P6PZJ1_ROSCH	1.0e-73	66.82	Putative Root UVB sensitive family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0...	[more]
tr\|A0A1R3K8V8\|A0A1R3K8V8_9ROSI	1.3e-73	68.33	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10363 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006968	RUS_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22296-RA	Carg22296-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006968	Root UVB sensitive family	PFAM	PF04884	DUF647	coord: 2..66 e-value: 3.0E-13 score: 49.9
IPR006968	Root UVB sensitive family	PANTHER	PTHR12770	FAMILY NOT NAMED	coord: 1..208
None	No IPR available	PANTHER	PTHR12770:SF7	PROTEIN ROOT UVB SENSITIVE 1, CHLOROPLASTIC	coord: 1..208

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22296	Cla007128	Watermelon (97103) v1	carwmB0477
Carg22296	Csa3G254050	Cucumber (Chinese Long) v2	carcuB0513
Carg22296	ClCG05G012170	Watermelon (Charleston Gray)	carwcgB0465
Carg22296	CSPI03G20170	Wild cucumber (PI 183967)	carcpiB0520
Carg22296	Cucsa.031840	Cucumber (Gy14) v1	carcgyB0552
Carg22296	CmoCh14G008010	Cucurbita moschata (Rifu)	carcmoB0650
Carg22296	CsGy3G019970	Cucumber (Gy14) v2	carcgybB0489

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22296	Melon (DHL92) v3.5.1	carmeB0485
Carg22296	Melon (DHL92) v3.6.1	carmedB0491
Carg22296	Watermelon (Charleston Gray)	carwcgB0464
Carg22296	Watermelon (97103) v1	carwmB0475
Carg22296	Watermelon (97103) v2	carwmbB0503
Carg22296	Wax gourd	carwgoB0582
Carg22296	Wax gourd	carwgoB0584
Carg22296	Cucurbita maxima (Rimu)	carcmaB0668
Carg22296	Cucurbita pepo (Zucchini)	carcpeB0673
Carg22296	Cucumber (Chinese Long) v3	carcucB0518
Carg22296	Bottle gourd (USVL1VR-Ls)	carlsiB435