Cucsa.031840 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.031840
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUPF0420 protein C16orf58 like
Locationscaffold00429 : 1067232 .. 1067403 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGCAAGTCTATCGGTATGATGCTTGGCATTACATTGGCCAATCGTATAAGGTCCTCAACATCACTTGCTCTTGGGTGCTTTAGCATAGTGACCTTAATCCACATGTTCTGCAATCTAAAATCATACAAATCCATTCAACTAAGGACATTAAATCCTTATCGTGCAA

mRNA sequence

ATGGTGAGCAAGTCTATCGGTATGATGCTTGGCATTACATTGGCCAATCGTATAAGGTCCTCAACATCACTTGCTCTTGGGTGCTTTAGCATAGTGACCTTAATCCACATGTTCTGCAATCTAAAATCATACAAATCCATTCAACTAAGGACATTAAATCCTTATCGTGCAA

Coding sequence (CDS)

ATGGTGAGCAAGTCTATCGGTATGATGCTTGGCATTACATTGGCCAATCGTATAAGGTCCTCAACATCACTTGCTCTTGGGTGCTTTAGCATAGTGACCTTAATCCACATGTTCTGCAATCTAAAATCATACAAATCCATTCAACTAAGGACATTAAATCCTTATCGTGCAA

Protein sequence

MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRAX
Homology
[Close]
BLAST of Cucsa.031840 vs. Swiss-Prot
Match: RUS1_ARATH (Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana GN=RUS1 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-15
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 1 

Query: 1   MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
           MVSKS+G++LGI +AN I +STSLAL  F +VT IHM+ NLKSY+ IQLRTLNPYRA
Sbjct: 355 MVSKSVGILLGIVVANCIGTSTSLALAAFGVVTTIHMYTNLKSYQCIQLRTLNPYRA 411

[Close]
BLAST of Cucsa.031840 vs. TrEMBL
Match: K4CI48_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-16
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1   MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
           MVSK+IG+MLGI LAN  RSSTSLAL  F +VT IHMFCNLKSY+SIQLRTLNPYRA
Sbjct: 357 MVSKAIGIMLGIALANYTRSSTSLALASFGVVTWIHMFCNLKSYQSIQLRTLNPYRA 413

[Close]
BLAST of Cucsa.031840 vs. TrEMBL
Match: A0A118JUD4_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006650 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.2e-16
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1   MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
           MVSKSIG+MLGI LAN I+SST LAL  F +VT +HMFCNLKSY+SIQLRTLNPYRA
Sbjct: 370 MVSKSIGIMLGIALANCIQSSTPLALAAFGVVTWVHMFCNLKSYQSIQLRTLNPYRA 426

[Close]
BLAST of Cucsa.031840 vs. TrEMBL
Match: M1BL00_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018482 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-16
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 1 

Query: 1  MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
          MVSK+IG+MLGI LAN  RSSTSLAL  F +VT IHMFCNLKSY SIQLRTLNPYRA
Sbjct: 1  MVSKAIGIMLGIALANCTRSSTSLALASFGVVTWIHMFCNLKSYHSIQLRTLNPYRA 57

[Close]
BLAST of Cucsa.031840 vs. TrEMBL
Match: M1BL01_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018482 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-16
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 1 

Query: 1   MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
           MVSK+IG+MLGI LAN  RSSTSLAL  F +VT IHMFCNLKSY SIQLRTLNPYRA
Sbjct: 360 MVSKAIGIMLGIALANCTRSSTSLALASFGVVTWIHMFCNLKSYHSIQLRTLNPYRA 416

[Close]
BLAST of Cucsa.031840 vs. TrEMBL
Match: A0A0J8B282_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_012650 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-16
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1 

Query: 1   MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
           MVSKS+G+MLGI LAN I SS  LAL CF ++T +HMFCNLKSY+SIQLRTLNPYRA
Sbjct: 402 MVSKSVGIMLGIALANCIGSSVPLALACFGVITWVHMFCNLKSYQSIQLRTLNPYRA 458

[Close]
BLAST of Cucsa.031840 vs. TAIR10
Match: AT3G45890.1 (AT3G45890.1 Protein of unknown function, DUF647)

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-16
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 1 

Query: 1   MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
           MVSKS+G++LGI +AN I +STSLAL  F +VT IHM+ NLKSY+ IQLRTLNPYRA
Sbjct: 355 MVSKSVGILLGIVVANCIGTSTSLALAAFGVVTTIHMYTNLKSYQCIQLRTLNPYRA 411

[Close]
BLAST of Cucsa.031840 vs. NCBI nr
Match: gi|778680559|ref|XP_011651345.1| (PREDICTED: protein root UVB sensitive 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1   MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
           MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA
Sbjct: 368 MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 424

[Close]
BLAST of Cucsa.031840 vs. NCBI nr
Match: gi|659098056|ref|XP_008449956.1| (PREDICTED: UPF0420 protein C16orf58 homolog [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 6.3e-21
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1 

Query: 1   MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
           MVSKSIGMMLGITLAN IRSSTSLALGCFSIVTLIHMF NLKSYKSIQLRTLNPYRA
Sbjct: 367 MVSKSIGMMLGITLANHIRSSTSLALGCFSIVTLIHMFSNLKSYKSIQLRTLNPYRA 423

[Close]
BLAST of Cucsa.031840 vs. NCBI nr
Match: gi|460397757|ref|XP_004244433.1| (PREDICTED: protein root UVB sensitive 1, chloroplastic [Solanum lycopersicum])

HSP 1 Score: 92.4 bits (228), Expect = 2.7e-16
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1   MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
           MVSK+IG+MLGI LAN  RSSTSLAL  F +VT IHMFCNLKSY+SIQLRTLNPYRA
Sbjct: 357 MVSKAIGIMLGIALANYTRSSTSLALASFGVVTWIHMFCNLKSYQSIQLRTLNPYRA 413

[Close]
BLAST of Cucsa.031840 vs. NCBI nr
Match: gi|970048616|ref|XP_015085810.1| (PREDICTED: protein root UVB sensitive 1, chloroplastic [Solanum pennellii])

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-16
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1   MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
           MVSK+IG+MLGI LAN  RSSTSLAL  F +VT IHMFCNLKSY+SIQLRTLNPYRA
Sbjct: 360 MVSKAIGIMLGIALANCTRSSTSLALASFGVVTWIHMFCNLKSYQSIQLRTLNPYRA 416

[Close]
BLAST of Cucsa.031840 vs. NCBI nr
Match: gi|697169604|ref|XP_009593697.1| (PREDICTED: UPF0420 protein C16orf58 homolog, partial [Nicotiana tomentosiformis])

HSP 1 Score: 91.7 bits (226), Expect = 4.7e-16
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1   MVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRA 58
           MVSK++G+MLGI LAN  RSSTSLAL  F +VT IHMFCNLKSY+SIQLRTLNPYRA
Sbjct: 150 MVSKAVGIMLGIALANCTRSSTSLALASFGVVTWIHMFCNLKSYQSIQLRTLNPYRA 206

The following BLAST results are available for this feature:
BLAST of Cucsa.031840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RUS1_ARATH1.8e-1570.18Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana GN=RUS1 PE=1... [more]
BLAST of Cucsa.031840 vs. TrEMBL
Match NameE-valueIdentityDescription
K4CI48_SOLLC1.9e-1680.70Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A118JUD4_CYNCS3.2e-1678.95Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006650 PE=4 ... [more]
M1BL00_SOLTU4.2e-1680.70Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018482 PE=4 SV=1[more]
M1BL01_SOLTU4.2e-1680.70Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018482 PE=4 SV=1[more]
A0A0J8B282_BETVU4.2e-1675.44Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_012650 PE=4 SV=... [more]
BLAST of Cucsa.031840 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G45890.11.0e-1670.18 Protein of unknown function, DUF647[more]
BLAST of Cucsa.031840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680559|ref|XP_011651345.1|1.1e-22100.00PREDICTED: protein root UVB sensitive 1, chloroplastic [Cucumis sativus][more]
gi|659098056|ref|XP_008449956.1|6.3e-2196.49PREDICTED: UPF0420 protein C16orf58 homolog [Cucumis melo][more]
gi|460397757|ref|XP_004244433.1|2.7e-1680.70PREDICTED: protein root UVB sensitive 1, chloroplastic [Solanum lycopersicum][more]
gi|970048616|ref|XP_015085810.1|3.6e-1680.70PREDICTED: protein root UVB sensitive 1, chloroplastic [Solanum pennellii][more]
gi|697169604|ref|XP_009593697.1|4.7e-1678.95PREDICTED: UPF0420 protein C16orf58 homolog, partial [Nicotiana tomentosiformis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006968RUS_fam
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032502 developmental process
biological_process GO:0010224 response to UV-B
biological_process GO:0008150 biological_process
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.031840.1Cucsa.031840.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006968Root UVB sensitive familyPANTHERPTHR12770FAMILY NOT NAMEDcoord: 1..57
score: 1.2
IPR006968Root UVB sensitive familyPFAMPF04884DUF647coord: 2..57
score: 2.1
NoneNo IPR availablePANTHERPTHR12770:SF7PROTEIN ROOT UVB SENSITIVE 1coord: 1..57
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.031840ClCG05G012180Watermelon (Charleston Gray)cgywcgB005
Cucsa.031840Carg22296Silver-seed gourdcarcgyB0552
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.031840Cucurbita maxima (Rimu)cgycmaB0005
Cucsa.031840Cucurbita moschata (Rifu)cgycmoB0004
Cucsa.031840Wild cucumber (PI 183967)cgycpiB003
Cucsa.031840Cucumber (Chinese Long) v2cgycuB003
Cucsa.031840Melon (DHL92) v3.5.1cgymeB003
Cucsa.031840Watermelon (Charleston Gray)cgywcgB004
Cucsa.031840Watermelon (97103) v1cgywmB003
Cucsa.031840Watermelon (97103) v1cgywmB005
Cucsa.031840Cucurbita pepo (Zucchini)cgycpeB0009
Cucsa.031840Bottle gourd (USVL1VR-Ls)cgylsiB004
Cucsa.031840Melon (DHL92) v3.6.1cgymedB005
Cucsa.031840Cucumber (Chinese Long) v3cgycucB006
Cucsa.031840Watermelon (97103) v2cgywmbB004
Cucsa.031840Wax gourdcgywgoB004