Csa3G234520 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGGTGGCGGCGGACAGCGGAGCTCCGACGGGTACTTGCCTCCGGGGTTCCGGTTCCACCCGACCGATGAAGAGTTGATCGGGCATTACCTCTTGAAGAAGGTTCTGAACTCCCATTTCTCTTCACCGGCCATTGCTCATGTCGACCTCAACAAGTCCGAGCCATGGGACCTCCCTGGTCAACTCCTCTCTCTCTCTCTTTTTCTTTTAAATTAAGTTCTGTTCGTATTTTTTTCGATACCTACAATATTTTTTTTTCCCTTTTCGAATTTATTTTGAATGAAAATTTTCAAGTCTTTGTTTGATAACCAATTAAACTTTTTTTTTCTATTTTTAAAAATGATATATATTTTCTCCTATTTCATATTATTACCATATTTTGAAACTTCATTCTGAATTTTTTTTTTTTATTCAAGTACATTTTATTACAATTTCTTACTATGATCGACATAAATATTAAGTACACTGTAGTAGTCAAATTCATACAACACATTTTTAAGAACTACTTTTTAAAATCTAGTTTGGTTTTTTAAAACGTTGATAAAGTTAGTTAACAAAAATAAACAAATGAAAACATCGTTATGAAATGTAAATTGAAGAAAGTTTTGAAGTAGTAGTAATAATATATATATTATATATATATATATAAAACTAATTGCAATAGTAATTGAATTAAAATAAAAAGGTTGAATTAATTAATAAATTGTTGTTGTTAAACATAAACAGAGAAAGCATTGATGGGGGAGAAAGAGTGGTATTTCTTCAGCGTGAGAGACCGGAAATACCCAACCGGATTGAGAACAAACCGGGCGACGGAAGCCGGGTACTGGAAAGCGACCGGGAAAGACCGGGAAATAATGAGCTCAAAAACCAACTCCTTGATTGGAATGAAGAAGACCCTTGTTTTCTACAGAGGCAGAGCTCCCAAAGGCCAAAAATCCAATTGGGTTATGCATGAATTTCGTCTCGCCGGCAAATTCTCTTACCATTTCCTCTCCGCCGCTACTTCCAAGGTTCCTCTCTCTCTCATCTCCACCCCTCGCCGTCGATGTTGACAGTTTCATTAATTCACTTTATTTGTTTTTTAAATACAACCCTTCCTCATATCAACGTCAAATCACCCATCTCTATTCTAATTTCATGCTTCCATTCAATTAATACTTTATTTATTTACTGCTTTTCTTTTTCCTTTTCCTTTTTTTTTTATAAAATAAAGTAAACCCATTTGAATTCTCCAAATTTAGTAAAAAACATTTAATTTTTTTATATTTGAAAACGTTTCAATTTTGTGTAATTTTTGTATTATGGTGGGTTTTTTTGTTTTTATTTTAGAAATATACCATTAACTTCTATTTTTAGAAAATATTAAAGAATTTTTTATTTAAAGTTAGGTTAATTTTTTAAGTGTGTTTTCAAATATATTGAAAAATCAATCAAAATATTTATTTAAATATTTATAAATGTAGCAAAATATATTTGTATTTAACAAACGATGATTTGCTTAAAAAAAAAAAGTTTAATGATATATCTTTTATACCATAACCAATGCCCCAGTTGGTCCTATACATGTGACCCGCTATCAGNNNNNNNNNNNNNNNNNNNNCTTTATGTCTGTGTGCATACGACATGCATTTCTTCTCTACAAGTTTAATGATATATCTTTTATACCATAATTTTTTTTTGTTATATTTATAAATATTTTAAACAGTTTTGTAATTGATTTTTGTTAATTTTTATTGTAATTAAATTTTTAGATTAAAACTACAAGTTTAGCCTTTTAGTTTCACGTTTATATTTATTTGATATTTTGTCCGTACAATGTCGTACTTTGATACGTCGTGTCTATAATAAATTTTAAAACTATTAATGTTATATATAAATAATAATATTTATTATTTAAAAAATATGATTGATTTATTAATTAATGTAAATTTGAATCTTATATCTAAGTCTAACAGTTAAACGTCAAAGTAAATGGGTGAATTTAGAGTAATTTAGAGTGAAGATAAAAATTGGAAATTTAGAAACTTTGTTAAACTTAATATTACTTTGGAAGTTTAAAGTTGTATTGAATATTTTTAAAAATGTAGAAACTAAATGGGTACTAAGAATAAATTAGGAGAGATTATTTTGAGGAAAGATCGATTATATTTACTTGATTTACTAAATTAGGAAGCAGTAAATAATGTTTTGAGTAGGTGAAGTAATTATAATAAAGATTTATTACATAAATGTAATTTATAATATATGGTATTTCAGTGCATTTATTGCACATTATTTTGATGGATGAGGACCAATTTGAATGAAGGGATTTTAATGTTTCTTTTGGATTAAATGTGGTTTATTTAATGTTTGGGAATAATAATAATAATTTCATAAATGAAATTTATGTTATGTCCCATTCCATTATTTATTTTCCTCATCAATCATACAGACCTATGGGTGGTGTGTATTTATTCTTTTATTGTTGTTATTTATTTTCTTTTTAACCTTCTTAAATTTTGCTACACCAAAGGGAACATCATCATCCCTTGTTTTTCTTTCATTTTATTTCGTCCTCATTTTAATATTTTCAACAAAAATATTTATGATCAATATATAAAAATATATATTGATCATAGACTCTACCAAAAACTATTTGTGTTTATTTGGTTTTCAAACTTTTTATTTGGTATTTAATAACTCACCTTAAACCCCTGTATTTAGTACATATGTGAAAGCTTAATTTATAATACTAAAACTTATAAGGACTAAAAAACTAAAAATTTAAAACTTTGTTTAATTAATTAAGTATCTTCTCGTCAAAAGTTTAAAAAGTATTACTACTTTCAGATTGGTTTGCTAATTAATTGAGCTTATTTTTCTTTTCTTTTTTTTTGAACAAATTAAATCTAGCTTATAGATTTTTTACAATATATGTTATAGCTTTTTAATTATTATAGTATATATATGTTTGTTGTTTAGAAAAATAAAAAGAGGTCAATTATCATGGAGTTCTTTATGTTTTTTTTTTTTTTTAACATGGATCGGTTTATTATCATTTTTTATAATTTCAAATATTTTACTTAAGCATTTTTCTGTAAAATCAATTAGTTTCGCTAAGACCAACAGACTATTAATCTTCTTTTTTTTTTTTTTTTTTTTTATAAAAAGTGACATGTTAAAAATTGAAAAGTACTCATGTACATCATAGATATCATCTATTTTTATATTTTACTAAATTGTCTAACTATAATATAGTAAATTTTGTTATTTTTTCTTTTTAGAATATTTTTAATTTTTTTATATGAATGTGAAAATAAATTCACAAAGATAGGTGATATGGAGATGTATCAAATATTACCAATATTACATTTAAGAAATATTATATATAAAAAATATTTTGGGGTGTTAGAGAAGGTTTTGATGACATTGAAGTGGTTGGGAAGCAGGATGAATGGGTGATATCAAGAGTTTTCAAGAAGACCGGCTCTGGCAACGGGGCTACCATGCACGGCGGTGCAATGAAGAAGACTTGCCCGAATCCCGAACCCAGTTCCCCTTCCTCGGTATCTCTGCCTCCTCTTCTCGACTCATCCCCCTACCCCTCTGCCGCCGTCGCAGCCGACGCTACCGTCAGCTCGGCCGCTTATGCGGACGGCGACGACACAAGGGAGCACGAGCTGCACGTGACCTGTTTCTCCACCAACAACCTCAACTACTGCTCCGCTTCAGCCTTTCCGAGCTTTCAGGAGAATCTACAGGCGCCGTTCTTGATCTCCCCTGTGGGTCCGTCGCTGGTTCATCTCGTGGGGGAGGCAGCCAATTTGGATGGGTATGGCGGTGGTCCGACACCAGAGGGTTCTGCCGACGTGAATGCTTCAGCTTATGTGTGGAGATTCTGAGATAAAATTATTCTCAATAGAATCTGATATATATAAAATGTGCTTTTAAAATCTCTTTTTGTTTTCTTATCAAATAA ATGGAAGGTGGCGGCGGACAGCGGAGCTCCGACGGGTACTTGCCTCCGGGGTTCCGGTTCCACCCGACCGATGAAGAGTTGATCGGGCATTACCTCTTGAAGAAGGTTCTGAACTCCCATTTCTCTTCACCGGCCATTGCTCATGTCGACCTCAACAAGTCCGAGCCATGGGACCTCCCTGAGAAAGCATTGATGGGGGAGAAAGAGTGGTATTTCTTCAGCGTGAGAGACCGGAAATACCCAACCGGATTGAGAACAAACCGGGCGACGGAAGCCGGGTACTGGAAAGCGACCGGGAAAGACCGGGAAATAATGAGCTCAAAAACCAACTCCTTGATTGGAATGAAGAAGACCCTTGTTTTCTACAGAGGCAGAGCTCCCAAAGGCCAAAAATCCAATTGGGTTATGCATGAATTTCGTCTCGCCGGCAAATTCTCTTACCATTTCCTCTCCGCCGCTACTTCCAAGGATGAATGGGTGATATCAAGAGTTTTCAAGAAGACCGGCTCTGGCAACGGGGCTACCATGCACGGCGGTGCAATGAAGAAGACTTGCCCGAATCCCGAACCCAGTTCCCCTTCCTCGGTATCTCTGCCTCCTCTTCTCGACTCATCCCCCTACCCCTCTGCCGCCGTCGCAGCCGACGCTACCGTCAGCTCGGCCGCTTATGCGGACGGCGACGACACAAGGGAGCACGAGCTGCACGTGACCTGTTTCTCCACCAACAACCTCAACTACTGCTCCGCTTCAGCCTTTCCGAGCTTTCAGGAGAATCTACAGGCGCCGTTCTTGATCTCCCCTGTGGGTCCGTCGCTGGTTCATCTCGTGGGGGAGGCAGCCAATTTGGATGGGTATGGCGGTGGTCCGACACCAGAGGGTTCTGCCGACGTGAATGCTTCAGCTTATGTGTGGAGATTCTGA ATGGAAGGTGGCGGCGGACAGCGGAGCTCCGACGGGTACTTGCCTCCGGGGTTCCGGTTCCACCCGACCGATGAAGAGTTGATCGGGCATTACCTCTTGAAGAAGGTTCTGAACTCCCATTTCTCTTCACCGGCCATTGCTCATGTCGACCTCAACAAGTCCGAGCCATGGGACCTCCCTGAGAAAGCATTGATGGGGGAGAAAGAGTGGTATTTCTTCAGCGTGAGAGACCGGAAATACCCAACCGGATTGAGAACAAACCGGGCGACGGAAGCCGGGTACTGGAAAGCGACCGGGAAAGACCGGGAAATAATGAGCTCAAAAACCAACTCCTTGATTGGAATGAAGAAGACCCTTGTTTTCTACAGAGGCAGAGCTCCCAAAGGCCAAAAATCCAATTGGGTTATGCATGAATTTCGTCTCGCCGGCAAATTCTCTTACCATTTCCTCTCCGCCGCTACTTCCAAGGATGAATGGGTGATATCAAGAGTTTTCAAGAAGACCGGCTCTGGCAACGGGGCTACCATGCACGGCGGTGCAATGAAGAAGACTTGCCCGAATCCCGAACCCAGTTCCCCTTCCTCGGTATCTCTGCCTCCTCTTCTCGACTCATCCCCCTACCCCTCTGCCGCCGTCGCAGCCGACGCTACCGTCAGCTCGGCCGCTTATGCGGACGGCGACGACACAAGGGAGCACGAGCTGCACGTGACCTGTTTCTCCACCAACAACCTCAACTACTGCTCCGCTTCAGCCTTTCCGAGCTTTCAGGAGAATCTACAGGCGCCGTTCTTGATCTCCCCTGTGGGTCCGTCGCTGGTTCATCTCGTGGGGGAGGCAGCCAATTTGGATGGGTATGGCGGTGGTCCGACACCAGAGGGTTCTGCCGACGTGAATGCTTCAGCTTATGTGTGGAGATTCTGA MEGGGGQRSSDGYLPPGFRFHPTDEELIGHYLLKKVLNSHFSSPAIAHVDLNKSEPWDLPEKALMGEKEWYFFSVRDRKYPTGLRTNRATEAGYWKATGKDREIMSSKTNSLIGMKKTLVFYRGRAPKGQKSNWVMHEFRLAGKFSYHFLSAATSKDEWVISRVFKKTGSGNGATMHGGAMKKTCPNPEPSSPSSVSLPPLLDSSPYPSAAVAADATVSSAAYADGDDTREHELHVTCFSTNNLNYCSASAFPSFQENLQAPFLISPVGPSLVHLVGEAANLDGYGGGPTPEGSADVNASAYVWRF*
BLAST of Csa3G234520 vs. Swiss-Prot
Match: NAC98_ARATH (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 2.0e-81 Identity = 178/335 (53.13%), Postives = 205/335 (61.19%), Query Frame = 1
BLAST of Csa3G234520 vs. Swiss-Prot
Match: NAC54_ARATH (Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 2.4e-71 Identity = 150/261 (57.47%), Postives = 179/261 (68.58%), Query Frame = 1
BLAST of Csa3G234520 vs. Swiss-Prot
Match: NC100_ARATH (NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 5.6e-68 Identity = 149/264 (56.44%), Postives = 170/264 (64.39%), Query Frame = 1
BLAST of Csa3G234520 vs. Swiss-Prot
Match: NAC79_ARATH (NAC domain-containing protein 79 OS=Arabidopsis thaliana GN=NAC079 PE=2 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 1.1e-66 Identity = 137/227 (60.35%), Postives = 153/227 (67.40%), Query Frame = 1
BLAST of Csa3G234520 vs. Swiss-Prot
Match: NAC59_ARATH (NAC domain-containing protein 59 OS=Arabidopsis thaliana GN=NAC59 PE=1 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 2.9e-64 Identity = 129/194 (66.49%), Postives = 140/194 (72.16%), Query Frame = 1
BLAST of Csa3G234520 vs. TrEMBL
Match: A0A0A0L787_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234520 PE=4 SV=1) HSP 1 Score: 636.0 bits (1639), Expect = 2.4e-179 Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 1
BLAST of Csa3G234520 vs. TrEMBL
Match: M5X664_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026810mg PE=4 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 6.2e-90 Identity = 194/322 (60.25%), Postives = 223/322 (69.25%), Query Frame = 1
BLAST of Csa3G234520 vs. TrEMBL
Match: I1VZH6_MEDTR (No apical meristem OS=Medicago truncatula GN=NAM PE=4 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 6.8e-89 Identity = 176/276 (63.77%), Postives = 201/276 (72.83%), Query Frame = 1
BLAST of Csa3G234520 vs. TrEMBL
Match: A0A072VKK5_MEDTR (CUP-shaped cotyledon protein, putative OS=Medicago truncatula GN=MTR_2g078700 PE=4 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 6.8e-89 Identity = 175/276 (63.41%), Postives = 201/276 (72.83%), Query Frame = 1
BLAST of Csa3G234520 vs. TrEMBL
Match: A0A0A0L3C7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G629480 PE=4 SV=1) HSP 1 Score: 332.4 bits (851), Expect = 5.8e-88 Identity = 186/301 (61.79%), Postives = 212/301 (70.43%), Query Frame = 1
BLAST of Csa3G234520 vs. TAIR10
Match: AT5G53950.1 (AT5G53950.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) HSP 1 Score: 303.9 bits (777), Expect = 1.1e-82 Identity = 178/335 (53.13%), Postives = 205/335 (61.19%), Query Frame = 1
BLAST of Csa3G234520 vs. TAIR10
Match: AT3G15170.1 (AT3G15170.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) HSP 1 Score: 270.4 bits (690), Expect = 1.4e-72 Identity = 150/261 (57.47%), Postives = 179/261 (68.58%), Query Frame = 1
BLAST of Csa3G234520 vs. TAIR10
Match: AT5G61430.1 (AT5G61430.1 NAC domain containing protein 100) HSP 1 Score: 259.2 bits (661), Expect = 3.1e-69 Identity = 149/264 (56.44%), Postives = 170/264 (64.39%), Query Frame = 1
BLAST of Csa3G234520 vs. TAIR10
Match: AT5G07680.1 (AT5G07680.1 NAC domain containing protein 80) HSP 1 Score: 255.0 bits (650), Expect = 5.9e-68 Identity = 137/227 (60.35%), Postives = 153/227 (67.40%), Query Frame = 1
BLAST of Csa3G234520 vs. TAIR10
Match: AT3G29035.1 (AT3G29035.1 NAC domain containing protein 3) HSP 1 Score: 246.9 bits (629), Expect = 1.6e-65 Identity = 129/194 (66.49%), Postives = 140/194 (72.16%), Query Frame = 1
BLAST of Csa3G234520 vs. NCBI nr
Match: gi|778680357|ref|XP_011651296.1| (PREDICTED: protein CUP-SHAPED COTYLEDON 2-like [Cucumis sativus]) HSP 1 Score: 636.0 bits (1639), Expect = 3.5e-179 Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 1
BLAST of Csa3G234520 vs. NCBI nr
Match: gi|659112004|ref|XP_008456019.1| (PREDICTED: protein CUP-SHAPED COTYLEDON 2-like [Cucumis melo]) HSP 1 Score: 594.3 bits (1531), Expect = 1.2e-166 Identity = 296/309 (95.79%), Postives = 297/309 (96.12%), Query Frame = 1
BLAST of Csa3G234520 vs. NCBI nr
Match: gi|595887094|ref|XP_007213366.1| (hypothetical protein PRUPE_ppa026810mg [Prunus persica]) HSP 1 Score: 339.0 bits (868), Expect = 8.9e-90 Identity = 194/322 (60.25%), Postives = 223/322 (69.25%), Query Frame = 1
BLAST of Csa3G234520 vs. NCBI nr
Match: gi|694332260|ref|XP_009356773.1| (PREDICTED: protein CUP-SHAPED COTYLEDON 2-like [Pyrus x bretschneideri]) HSP 1 Score: 337.8 bits (865), Expect = 2.0e-89 Identity = 191/311 (61.41%), Postives = 216/311 (69.45%), Query Frame = 1
BLAST of Csa3G234520 vs. NCBI nr
Match: gi|645240200|ref|XP_008226496.1| (PREDICTED: protein CUP-SHAPED COTYLEDON 2-like [Prunus mume]) HSP 1 Score: 337.4 bits (864), Expect = 2.6e-89 Identity = 189/319 (59.25%), Postives = 219/319 (68.65%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|