Csa3G232970 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G232970
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 15111058 .. 15111554 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGTTTTCACATCAAATACTTTATAAATAATATTCTTTTTCAATTGATAACAAACAAGCACCATTTTCATATATATATATATATTTTAATCATCCATTATTGTCTATTTGAAGCTTAAATAAATTTCAATTTCTTCCTAACAAACCCTAGTTTCATCTTGTGGTGTAATTAATACCTCGTCAAAACTAAAACAAAAAAAAATCATGAGTTGACTTCAATGAAAACCAAAGAAGAATATTCAAACCTTAGATAAGTTCAGGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA

mRNA sequence

ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA

Coding sequence (CDS)

ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA

Protein sequence

MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVEGDGCMRSEEVEGEVREKWS*
Homology
[Close]
BLAST of Csa3G232970 vs. TrEMBL
Match: A0A0A0L6N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G232970 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 7.8e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60
          MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE
Sbjct: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60

Query: 61 GDGCMRSEEVEGEVREKWS 80
          GDGCMRSEEVEGEVREKWS
Sbjct: 61 GDGCMRSEEVEGEVREKWS 79

[Close]
BLAST of Csa3G232970 vs. NCBI nr
Match: gi|700202492|gb|KGN57625.1| (hypothetical protein Csa_3G232970 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60
          MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE
Sbjct: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60

Query: 61 GDGCMRSEEVEGEVREKWS 80
          GDGCMRSEEVEGEVREKWS
Sbjct: 61 GDGCMRSEEVEGEVREKWS 79

The following BLAST results are available for this feature:
BLAST of Csa3G232970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6N0_CUCSA7.8e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G232970 PE=4 SV=1[more]
BLAST of Csa3G232970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202492|gb|KGN57625.1|1.1e-36100.00hypothetical protein Csa_3G232970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU108561cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G232970.1Csa3G232970.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU108561CU108561transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G232970CSPI03G19400Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G232970Melon (DHL92) v3.6.1cumedB238
Csa3G232970Silver-seed gourdcarcuB0043
Csa3G232970Silver-seed gourdcarcuB0675
Csa3G232970Watermelon (97103) v2cuwmbB215
Csa3G232970Wax gourdcuwgoB283
Csa3G232970Cucumber (Gy14) v1cgycuB003
Csa3G232970Cucurbita maxima (Rimu)cmacuB320
Csa3G232970Cucurbita maxima (Rimu)cmacuB697
Csa3G232970Cucurbita moschata (Rifu)cmocuB307
Csa3G232970Cucurbita moschata (Rifu)cmocuB687
Csa3G232970Melon (DHL92) v3.5.1cumeB166
Csa3G232970Watermelon (Charleston Gray)cuwcgB230
Csa3G232970Watermelon (97103) v1cuwmB243
Csa3G232970Cucurbita pepo (Zucchini)cpecuB205
Csa3G232970Cucurbita pepo (Zucchini)cpecuB389
Csa3G232970Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G232970Cucumber (Gy14) v2cgybcuB109