CSPI03G19400 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G19400
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 15192276 .. 15192772 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGTTTTCACATCAAATACTTTATAAATAATATTCTTTTTCAATTGATAACAAACAAGCACCATTTTCATATATATATATATATTTTAATCATCCATTATTGTCTATTTGAAGCTTAAATAAATTTCAATTTCTTCCTAACAAACCCTAGTTTCATCTTGTGGTGTAATTAATACCTCGTCAAAACTAAAACAAAAAAAAATCATGAGTTGACTTCAATGAAAACCAAAGAAGAATATTCAAACCTTAGATAAGTTCAGGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA

mRNA sequence

ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA

Coding sequence (CDS)

ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA
Homology
[Close]
BLAST of CSPI03G19400 vs. TrEMBL
Match: A0A0A0L6N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G232970 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.6e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60
          MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE
Sbjct: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60

Query: 61 GDGCMRSEEVEGEVREKWS 80
          GDGCMRSEEVEGEVREKWS
Sbjct: 61 GDGCMRSEEVEGEVREKWS 79

[Close]
BLAST of CSPI03G19400 vs. NCBI nr
Match: gi|700202492|gb|KGN57625.1| (hypothetical protein Csa_3G232970 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60
          MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE
Sbjct: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60

Query: 61 GDGCMRSEEVEGEVREKWS 80
          GDGCMRSEEVEGEVREKWS
Sbjct: 61 GDGCMRSEEVEGEVREKWS 79

The following BLAST results are available for this feature:
BLAST of CSPI03G19400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G19400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6N0_CUCSA9.6e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G232970 PE=4 SV=1[more]
BLAST of CSPI03G19400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G19400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202492|gb|KGN57625.1|1.4e-34100.00hypothetical protein Csa_3G232970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G19400.1CSPI03G19400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G19400Csa3G232970Cucumber (Chinese Long) v2cpicuB120
CSPI03G19400CsaV3_3G019450Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G19400Cucurbita maxima (Rimu)cmacpiB326
CSPI03G19400Cucurbita maxima (Rimu)cmacpiB705
CSPI03G19400Cucurbita moschata (Rifu)cmocpiB315
CSPI03G19400Cucurbita moschata (Rifu)cmocpiB698
CSPI03G19400Melon (DHL92) v3.5.1cpimeB241
CSPI03G19400Watermelon (Charleston Gray)cpiwcgB237
CSPI03G19400Watermelon (97103) v1cpiwmB242
CSPI03G19400Cucurbita pepo (Zucchini)cpecpiB208
CSPI03G19400Cucurbita pepo (Zucchini)cpecpiB388
CSPI03G19400Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G19400Melon (DHL92) v3.6.1cpimedB239
CSPI03G19400Cucumber (Gy14) v2cgybcpiB110
CSPI03G19400Silver-seed gourdcarcpiB0047
CSPI03G19400Silver-seed gourdcarcpiB0685
CSPI03G19400Watermelon (97103) v2cpiwmbB221
CSPI03G19400Wax gourdcpiwgoB283
CSPI03G19400Cucumber (Gy14) v1cgycpiB003