CsaV3_3G019450 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G019450
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 15356564 .. 15357060 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGTTTTCACATCAAATACTTTATAAATAATATTCTTTTTCAATTGATAACAAACAAGCACCATTTTCATATATATATATATATTTTAATCATCCATTATTGTCTATTTGAAGCTTAAATAAATTTCAATTTCTTCCTAACAAACCCTAGTTTCATCTTGTGGTGTAATTAATACCTCGTCAAAACTAAAACAAAAAAAAATCATGAGTTGACTTCAATGAAAACCAAAGAAGAATATTCAAACCTTAGATAAGTTCAGGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA

mRNA sequence

ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA

Coding sequence (CDS)

ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA

Protein sequence

MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVEGDGCMRSEEVEGEVREKWS
Homology
[Close]
BLAST of CsaV3_3G019450 vs. NCBI nr
Match: KGN57625.1 (hypothetical protein Csa_3G232970 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 2.7e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60
          MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE
Sbjct: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60

Query: 61 GDGCMRSEEVEGEVREKWS 80
          GDGCMRSEEVEGEVREKWS
Sbjct: 61 GDGCMRSEEVEGEVREKWS 79

[Close]
BLAST of CsaV3_3G019450 vs. TrEMBL
Match: tr|A0A0A0L6N0|A0A0A0L6N0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G232970 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60
          MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE
Sbjct: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60

Query: 61 GDGCMRSEEVEGEVREKWS 80
          GDGCMRSEEVEGEVREKWS
Sbjct: 61 GDGCMRSEEVEGEVREKWS 79

The following BLAST results are available for this feature:
BLAST of CsaV3_3G019450 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57625.12.7e-34100.00hypothetical protein Csa_3G232970 [Cucumis sativus][more]
BLAST of CsaV3_3G019450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G019450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G019450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6N0|A0A0A0L6N0_CUCSA1.8e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G232970 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G019450.1CsaV3_3G019450.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G019450CSPI03G19400Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G019450Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G019450Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G019450Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G019450Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G019450Watermelon (97103) v1cucwmB252
CsaV3_3G019450Watermelon (97103) v2cucwmbB217
CsaV3_3G019450Wax gourdcucwgoB287
CsaV3_3G019450Silver-seed gourdcarcucB0048
CsaV3_3G019450Silver-seed gourdcarcucB0687
CsaV3_3G019450Cucumber (Gy14) v2cgybcucB117
CsaV3_3G019450Cucumber (Gy14) v1cgycucB006
CsaV3_3G019450Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G019450Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G019450Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G019450Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G019450Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G019450Cucurbita pepo (Zucchini)cpecucB0484