CSPI03G19400.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI03G19400.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 15192276 .. 15192772 (-)
Sequence length240
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGTTTTCACATCAAATACTTTATAAATAATATTCTTTTTCAATTGATAACAAACAAGCACCATTTTCATATATATATATATATTTTAATCATCCATTATTGTCTATTTGAAGCTTAAATAAATTTCAATTTCTTCCTAACAAACCCTAGTTTCATCTTGTGGTGTAATTAATACCTCGTCAAAACTAAAACAAAAAAAAATCATGAGTTGACTTCAATGAAAACCAAAGAAGAATATTCAAACCTTAGATAAGTTCAGGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA

mRNA sequence

ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA

Coding sequence (CDS)

ATGGCAGCCCTTGATGAGAAAGACATCTATAAGAGCCAACATGAACAGATTGGAGGTGGAGCGAACGATGGAGAAATTGCAAGACGGAGGCAGAGACTGAGAAGGAGGAAAACAGCGGAGAGGCTGGCTGAAGGAGAGGCGAATGATGGAGAGGAGGTGAATGTCGAAGAGCTTGTTGAAGGAGACGGTTGCATGCGAAGCGAAGAGGTTGAAGGAGAGGTGCGTGAGAAGTGGAGCTGA
Homology
[Close]
BLAST of CSPI03G19400.1 vs. TrEMBL
Match: A0A0A0L6N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G232970 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.6e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60
          MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE
Sbjct: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60

Query: 61 GDGCMRSEEVEGEVREKWS 80
          GDGCMRSEEVEGEVREKWS
Sbjct: 61 GDGCMRSEEVEGEVREKWS 79

[Close]
BLAST of CSPI03G19400.1 vs. NCBI nr
Match: gi|700202492|gb|KGN57625.1| (hypothetical protein Csa_3G232970 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60
          MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE
Sbjct: 1  MAALDEKDIYKSQHEQIGGGANDGEIARRRQRLRRRKTAERLAEGEANDGEEVNVEELVE 60

Query: 61 GDGCMRSEEVEGEVREKWS 80
          GDGCMRSEEVEGEVREKWS
Sbjct: 61 GDGCMRSEEVEGEVREKWS 79

The following BLAST results are available for this feature:
BLAST of CSPI03G19400.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G19400.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6N0_CUCSA9.6e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G232970 PE=4 SV=1[more]
BLAST of CSPI03G19400.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G19400.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202492|gb|KGN57625.1|1.4e-34100.00hypothetical protein Csa_3G232970 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G19400CSPI03G19400gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G19400.1CSPI03G19400.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G19400.1.cds2CSPI03G19400.1.cds2CDS
CSPI03G19400.1.cds1CSPI03G19400.1.cds1CDS