Csa3G213490 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G213490
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 14279349 .. 14279860 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAATAAACAAAAGGAAAAGGCAAGAAGAGAATTGCCGTGTTGAAGAAGATATGGCCACTGAAGAGAGCAATATAGAGAAGAAGGTAAGCATAAGTGAGCACCTCCTTTTGAAAAAACCTTCCGCTCGGACAACCACCATTGCCCATTTTCAATAGCAGGGTCTAAGAAAACGATTGTTCAAAAAAGAGACTATTTCTTCTCAAAGGACAATGACGATGAGAAAGACAGAGGATAGTGAGCTTGAAATTGCGGAGAGTTCTGTGGATTCTTCTTGACCTAAGTAGTTTCCGATGACTGACACTATTGGGGAAAATTGGGAGGAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTCTGAAGGCCAAACATAA

mRNA sequence

ATGACTGACACTATTGGGGAAAATTGGGAGGAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTCTGAAGGCCAAACATAA

Coding sequence (CDS)

ATGACTGACACTATTGGGGAAAATTGGGAGGAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTCTGAAGGCCAAACATAA

Protein sequence

MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIALIPRLSNSEGQT*
Homology
[Close]
BLAST of Csa3G213490 vs. TrEMBL
Match: A0A0A0LAB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213490 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60
          MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA
Sbjct: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60

Query: 61 LIPRLSNSEGQT 73
          LIPRLSNSEGQT
Sbjct: 61 LIPRLSNSEGQT 72

[Close]
BLAST of Csa3G213490 vs. NCBI nr
Match: gi|700202424|gb|KGN57557.1| (hypothetical protein Csa_3G213490 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60
          MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA
Sbjct: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60

Query: 61 LIPRLSNSEGQT 73
          LIPRLSNSEGQT
Sbjct: 61 LIPRLSNSEGQT 72

The following BLAST results are available for this feature:
BLAST of Csa3G213490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAB2_CUCSA2.2e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213490 PE=4 SV=1[more]
BLAST of Csa3G213490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202424|gb|KGN57557.1|3.1e-33100.00hypothetical protein Csa_3G213490 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU129635cucumber EST collection version 3.0transcribed_cluster
CU177387cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G213490.1Csa3G213490.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU177387CU177387transcribed_cluster
CU129635CU129635transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G213490CSPI03G18730Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G213490Watermelon (97103) v2cuwmbB215
Csa3G213490Wax gourdcuwgoB283
Csa3G213490Cucumber (Gy14) v1cgycuB029
Csa3G213490Cucurbita maxima (Rimu)cmacuB320
Csa3G213490Cucurbita maxima (Rimu)cmacuB697
Csa3G213490Cucurbita moschata (Rifu)cmocuB307
Csa3G213490Cucurbita moschata (Rifu)cmocuB687
Csa3G213490Melon (DHL92) v3.5.1cumeB166
Csa3G213490Watermelon (Charleston Gray)cuwcgB230
Csa3G213490Watermelon (97103) v1cuwmB243
Csa3G213490Cucurbita pepo (Zucchini)cpecuB205
Csa3G213490Cucurbita pepo (Zucchini)cpecuB389
Csa3G213490Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G213490Cucumber (Gy14) v2cgybcuB109
Csa3G213490Melon (DHL92) v3.6.1cumedB238
Csa3G213490Silver-seed gourdcarcuB0400
Csa3G213490Silver-seed gourdcarcuB0675