Csa3G213490.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G213490.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 14279349 .. 14279860 (+)
Sequence length219
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAATAAACAAAAGGAAAAGGCAAGAAGAGAATTGCCGTGTTGAAGAAGATATGGCCACTGAAGAGAGCAATATAGAGAAGAAGGTAAGCATAAGTGAGCACCTCCTTTTGAAAAAACCTTCCGCTCGGACAACCACCATTGCCCATTTTCAATAGCAGGGTCTAAGAAAACGATTGTTCAAAAAAGAGACTATTTCTTCTCAAAGGACAATGACGATGAGAAAGACAGAGGATAGTGAGCTTGAAATTGCGGAGAGTTCTGTGGATTCTTCTTGACCTAAGTAGTTTCCGATGACTGACACTATTGGGGAAAATTGGGAGGAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTCTGAAGGCCAAACATAA

mRNA sequence

ATGACTGACACTATTGGGGAAAATTGGGAGGAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTCTGAAGGCCAAACATAA

Coding sequence (CDS)

ATGACTGACACTATTGGGGAAAATTGGGAGGAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTCTGAAGGCCAAACATAA

Protein sequence

MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIALIPRLSNSEGQT*
Homology
[Close]
BLAST of Csa3G213490.1 vs. TrEMBL
Match: A0A0A0LAB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213490 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60
          MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA
Sbjct: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60

Query: 61 LIPRLSNSEGQT 73
          LIPRLSNSEGQT
Sbjct: 61 LIPRLSNSEGQT 72

[Close]
BLAST of Csa3G213490.1 vs. NCBI nr
Match: gi|700202424|gb|KGN57557.1| (hypothetical protein Csa_3G213490 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60
          MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA
Sbjct: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60

Query: 61 LIPRLSNSEGQT 73
          LIPRLSNSEGQT
Sbjct: 61 LIPRLSNSEGQT 72

The following BLAST results are available for this feature:
BLAST of Csa3G213490.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAB2_CUCSA2.2e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213490 PE=4 SV=1[more]
BLAST of Csa3G213490.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202424|gb|KGN57557.1|3.1e-33100.00hypothetical protein Csa_3G213490 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G213490Csa3G213490gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G213490.1Csa3G213490.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G213490.1.utr5p1Csa3G213490.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G213490.1.cds1Csa3G213490.1.cds1CDS