CSPI03G18730 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G18730
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 14356953 .. 14357707 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGCATAATCGATTTAAAAGAAAGAAAAACTGCAGGGAGAGATGAGAAAGAAACCAAACAAACAATAAACAAAAGGAAAAGGCAAGAAGAGAATTGCCGTGTTGAAGAAGATATGGCCACTGAAGAGAGCAATATAGAGAAGAAGGTAAGCATAAGTGAGCACCTCCTTTTGAAAAAACCTTCCGCTCGGACAACCACCATTGCCCATTTTCAATAGCAGGGTCTAAGAAAACGATTGTTCAAAAAAGAGACTATTTCTTCTCAAAGGACAATGACGATGAGAAAGACAGAGGATAGTGAGCTTGAAATTGCGGAGAGTTCTGTGGATTCTTCTTGACCTAAGTAGTTTCCGATGACTGACACTATTGGGGAAAATTGGGAGGAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTTTGAAGGCCAAACATAAAATGAATTATAATAGTCCACTCCACTCCCGGGTAATTCTTGGGCCAAACAGGGTCAAAGGGGTTTTGATGTTGTCATGGTAGTAGTGGACCGATTCAGCAAGATGGCCCATTTCCTAGCTTGCAAAAAACTAATGATGTTTATATTGCTACTCTTTTTTTTAAGAGAAATTGTGAGAAACCAT

mRNA sequence

ATGACTGACACTATTGGGGAAAATTGGGAGGAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTTTGAAGGCCAAACATAA

Coding sequence (CDS)

ATGACTGACACTATTGGGGAAAATTGGGAGGAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTTTGAAGGCCAAACATAA
Homology
[Close]
BLAST of CSPI03G18730 vs. TrEMBL
Match: A0A0A0LAB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213490 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.1e-32
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60
          MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA
Sbjct: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60

Query: 61 LIPRLSNFEGQT 73
          LIPRLSN EGQT
Sbjct: 61 LIPRLSNSEGQT 72

[Close]
BLAST of CSPI03G18730 vs. NCBI nr
Match: gi|700202424|gb|KGN57557.1| (hypothetical protein Csa_3G213490 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 5.8e-32
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60
          MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA
Sbjct: 1  MTDTIGENWEEMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIA 60

Query: 61 LIPRLSNFEGQT 73
          LIPRLSN EGQT
Sbjct: 61 LIPRLSNSEGQT 72

The following BLAST results are available for this feature:
BLAST of CSPI03G18730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G18730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAB2_CUCSA4.1e-3298.61Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213490 PE=4 SV=1[more]
BLAST of CSPI03G18730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G18730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202424|gb|KGN57557.1|5.8e-3298.61hypothetical protein Csa_3G213490 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G18730.1CSPI03G18730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G18730Csa3G213490Cucumber (Chinese Long) v2cpicuB120
CSPI03G18730CsaV3_3G018810Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G18730Cucurbita pepo (Zucchini)cpecpiB208
CSPI03G18730Cucurbita pepo (Zucchini)cpecpiB388
CSPI03G18730Bottle gourd (USVL1VR-Ls)cpilsiB209
CSPI03G18730Melon (DHL92) v3.6.1cpimedB239
CSPI03G18730Cucumber (Gy14) v2cgybcpiB110
CSPI03G18730Silver-seed gourdcarcpiB0405
CSPI03G18730Silver-seed gourdcarcpiB0685
CSPI03G18730Watermelon (97103) v2cpiwmbB221
CSPI03G18730Wax gourdcpiwgoB283
CSPI03G18730Cucumber (Gy14) v1cgycpiB030
CSPI03G18730Cucurbita maxima (Rimu)cmacpiB326
CSPI03G18730Cucurbita maxima (Rimu)cmacpiB705
CSPI03G18730Cucurbita moschata (Rifu)cmocpiB315
CSPI03G18730Cucurbita moschata (Rifu)cmocpiB698
CSPI03G18730Melon (DHL92) v3.5.1cpimeB241
CSPI03G18730Watermelon (Charleston Gray)cpiwcgB237
CSPI03G18730Watermelon (97103) v1cpiwmB242