CsaV3_3G018810 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G018810
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 14511440 .. 14511628 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTCTGAAGGCCAAACATAA

mRNA sequence

GAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTCTGAAGGCCAAACATAA

Coding sequence (CDS)

GAGATGAATGAGAGAAGTGGAAATGGAAAGCCAGAAGAGAAGCAAGAGGTGGAGTATGGCGTGGAGTTGGAGAGGAGTACAAGATGGAGTACGAAGGAAAGACGTGGAGCACGCATGGAGTTGGGAGGAGTGAAACATATTATAATAGCCTTAATCCCCAGATTAAGCAATTCTGAAGGCCAAACATAA

Protein sequence

EMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIALIPRLSNSEGQT

Homology

[Close]

BLAST of CsaV3_3G018810 vs. NCBI nr
Match: KGN57557.1 (hypothetical protein Csa_3G213490 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  EMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIALIPRLSNSEG 60
          EMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIALIPRLSNSEG
Sbjct: 11 EMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIALIPRLSNSEG 70

Query: 61 QT 63
          QT
Sbjct: 71 QT 72

[Close]

BLAST of CsaV3_3G018810 vs. TrEMBL
Match: tr|A0A0A0LAB2|A0A0A0LAB2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G213490 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.9e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  EMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIALIPRLSNSEG 60
          EMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIALIPRLSNSEG
Sbjct: 11 EMNERSGNGKPEEKQEVEYGVELERSTRWSTKERRGARMELGGVKHIIIALIPRLSNSEG 70

Query: 61 QT 63
          QT
Sbjct: 71 QT 72

The following BLAST results are available for this feature:

BLAST of CsaV3_3G018810 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57557.1	1.0e-25	100.00	hypothetical protein Csa_3G213490 [Cucumis sativus]	[more]

BLAST of CsaV3_3G018810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G018810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G018810 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAB2\|A0A0A0LAB2_CUCSA	6.9e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G213490 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G018810.1	CsaV3_3G018810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G018810	CSPI03G18730	Wild cucumber (PI 183967)	cpicucB144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G018810	Silver-seed gourd	carcucB0403
CsaV3_3G018810	Silver-seed gourd	carcucB0687
CsaV3_3G018810	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G018810	Cucumber (Gy14) v1	cgycucB030
CsaV3_3G018810	Cucurbita maxima (Rimu)	cmacucB0373
CsaV3_3G018810	Cucurbita maxima (Rimu)	cmacucB0829
CsaV3_3G018810	Cucurbita moschata (Rifu)	cmocucB0370
CsaV3_3G018810	Cucurbita moschata (Rifu)	cmocucB0814
CsaV3_3G018810	Cucurbita pepo (Zucchini)	cpecucB0247
CsaV3_3G018810	Cucurbita pepo (Zucchini)	cpecucB0484
CsaV3_3G018810	Bottle gourd (USVL1VR-Ls)	cuclsiB230
CsaV3_3G018810	Melon (DHL92) v3.5.1	cucmeB247
CsaV3_3G018810	Melon (DHL92) v3.6.1	cucmedB246
CsaV3_3G018810	Watermelon (Charleston Gray)	cucwcgB238
CsaV3_3G018810	Watermelon (97103) v1	cucwmB252
CsaV3_3G018810	Watermelon (97103) v2	cucwmbB217
CsaV3_3G018810	Wax gourd	cucwgoB287