Csa3G206310 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G206310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionGlycoprotein 3-alpha-L-fucosyltransferase A; contains IPR001503 (Glycosyl transferase, family 10)
LocationChr3 : 14019925 .. 14020161 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCGCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAGGTGCATTTTAA

mRNA sequence

ATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCGCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAGGTGCATTTTAA

Coding sequence (CDS)

ATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCGCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAGGTGCATTTTAA

Protein sequence

MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVTIDSYGSCHRNRDGSTGAF*
Homology
[Close]
BLAST of Csa3G206310 vs. Swiss-Prot
Match: FUT11_ARATH (Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-31
Identity = 66/74 (89.19%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQ K+EKALAAAFISNC ARNFRL+ALEAL K NV 
Sbjct: 180 MTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCAARNFRLQALEALMKTNVK 239

Query: 61  IDSYGSCHRNRDGS 75
           IDSYG CHRNRDGS
Sbjct: 240 IDSYGGCHRNRDGS 253

[Close]
BLAST of Csa3G206310 vs. Swiss-Prot
Match: FUT12_ARATH (Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-30
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIM+PVQ K+E+A+AAAFISNCGARNFRL+ALEAL K N+ 
Sbjct: 191 MTTSLSSDVPVGYFSWAEYDIMSPVQPKTERAIAAAFISNCGARNFRLQALEALMKTNIK 250

Query: 61  IDSYGSCHRNRDG 74
           IDSYG CHRNRDG
Sbjct: 251 IDSYGGCHRNRDG 263

[Close]
BLAST of Csa3G206310 vs. TrEMBL
Match: A0A0A0L998_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G206310 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
          MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60

Query: 61 IDSYGSCHRNRDGSTGAF 79
          IDSYGSCHRNRDGSTGAF
Sbjct: 61 IDSYGSCHRNRDGSTGAF 78

[Close]
BLAST of Csa3G206310 vs. TrEMBL
Match: Q5DTC8_MEDSA (Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 184 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 243

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 244 IDSYGSCHRNRDG 256

[Close]
BLAST of Csa3G206310 vs. TrEMBL
Match: Q6Q5Y3_MEDTR (Core alpha 1,3-fucosyltransferase OS=Medicago truncatula GN=FUT2 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 183 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 242

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 243 IDSYGSCHRNRDG 255

[Close]
BLAST of Csa3G206310 vs. TrEMBL
Match: G7JL78_MEDTR (Glycoprotein 3-alpha-L-fucosyltransferase A OS=Medicago truncatula GN=MTR_4g086010 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 183 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 242

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 243 IDSYGSCHRNRDG 255

[Close]
BLAST of Csa3G206310 vs. TrEMBL
Match: Q5DTC9_MEDSA (Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 185 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 244

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 245 IDSYGSCHRNRDG 257

[Close]
BLAST of Csa3G206310 vs. TAIR10
Match: AT3G19280.1 (AT3G19280.1 fucosyltransferase 11)

HSP 1 Score: 136.0 bits (341), Expect = 1.0e-32
Identity = 66/74 (89.19%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQ K+EKALAAAFISNC ARNFRL+ALEAL K NV 
Sbjct: 180 MTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCAARNFRLQALEALMKTNVK 239

Query: 61  IDSYGSCHRNRDGS 75
           IDSYG CHRNRDGS
Sbjct: 240 IDSYGGCHRNRDGS 253

[Close]
BLAST of Csa3G206310 vs. TAIR10
Match: AT1G49710.1 (AT1G49710.1 fucosyltransferase 12)

HSP 1 Score: 133.3 bits (334), Expect = 6.7e-32
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIM+PVQ K+E+A+AAAFISNCGARNFRL+ALEAL K N+ 
Sbjct: 191 MTTSLSSDVPVGYFSWAEYDIMSPVQPKTERAIAAAFISNCGARNFRLQALEALMKTNIK 250

Query: 61  IDSYGSCHRNRDG 74
           IDSYG CHRNRDG
Sbjct: 251 IDSYGGCHRNRDG 263

[Close]
BLAST of Csa3G206310 vs. NCBI nr
Match: gi|700202396|gb|KGN57529.1| (hypothetical protein Csa_3G206310 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
          MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60

Query: 61 IDSYGSCHRNRDGSTGAF 79
          IDSYGSCHRNRDGSTGAF
Sbjct: 61 IDSYGSCHRNRDGSTGAF 78

[Close]
BLAST of Csa3G206310 vs. NCBI nr
Match: gi|449446089|ref|XP_004140804.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 192 MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 251

Query: 61  IDSYGSCHRNRDGST 76
           IDSYGSCHRNRDGST
Sbjct: 252 IDSYGSCHRNRDGST 266

[Close]
BLAST of Csa3G206310 vs. NCBI nr
Match: gi|659112246|ref|XP_008456133.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 3.0e-34
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLN+T
Sbjct: 192 MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNIT 251

Query: 61  IDSYGSCHRNRDGST 76
           IDSYGSCHRNRDGST
Sbjct: 252 IDSYGSCHRNRDGST 266

[Close]
BLAST of Csa3G206310 vs. NCBI nr
Match: gi|672176107|ref|XP_008808123.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Phoenix dactylifera])

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-30
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP+Q KSE+ALAAAFISNCGARNFRL+ALE LEKLN+ 
Sbjct: 173 MTTSLSSDVPVGYFSWAEYDIMAPIQQKSEEALAAAFISNCGARNFRLQALEMLEKLNIK 232

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 233 IDSYGSCHRNRDG 245

[Close]
BLAST of Csa3G206310 vs. NCBI nr
Match: gi|37543464|gb|AAL99371.1| (alpha 1,3 fucosyltransferase [Medicago sativa])

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 184 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 243

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 244 IDSYGSCHRNRDG 256

The following BLAST results are available for this feature:
BLAST of Csa3G206310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FUT11_ARATH1.8e-3189.19Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=... [more]
FUT12_ARATH1.2e-3084.93Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 S... [more]
BLAST of Csa3G206310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L998_CUCSA2.3e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G206310 PE=4 SV=1[more]
Q5DTC8_MEDSA1.8e-3089.04Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1[more]
Q6Q5Y3_MEDTR1.8e-3089.04Core alpha 1,3-fucosyltransferase OS=Medicago truncatula GN=FUT2 PE=3 SV=1[more]
G7JL78_MEDTR1.8e-3089.04Glycoprotein 3-alpha-L-fucosyltransferase A OS=Medicago truncatula GN=MTR_4g0860... [more]
Q5DTC9_MEDSA1.8e-3089.04Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1[more]
BLAST of Csa3G206310 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19280.11.0e-3289.19 fucosyltransferase 11[more]
AT1G49710.16.7e-3284.93 fucosyltransferase 12[more]
BLAST of Csa3G206310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202396|gb|KGN57529.1|3.2e-36100.00hypothetical protein Csa_3G206310 [Cucumis sativus][more]
gi|449446089|ref|XP_004140804.1|2.3e-34100.00PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A [Cucumis sativus][more]
gi|659112246|ref|XP_008456133.1|3.0e-3498.67PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo][more]
gi|672176107|ref|XP_008808123.1|2.0e-3090.41PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Phoenix dactylifera... [more]
gi|37543464|gb|AAL99371.1|2.7e-3089.04alpha 1,3 fucosyltransferase [Medicago sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001503Glyco_trans_10
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
Vocabulary: Molecular Function
TermDefinition
GO:0008417fucosyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0036065 fucosylation
biological_process GO:0006486 protein glycosylation
cellular_component GO:0032580 Golgi cisterna membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0008417 fucosyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G206310.1Csa3G206310.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001503Glycosyl transferase family 10PANTHERPTHR11929ALPHA- 1,3 -FUCOSYLTRANSFERASEcoord: 1..73
score: 3.1
NoneNo IPR availablePANTHERPTHR11929:SF148GLYCOPROTEIN 3-ALPHA-L-FUCOSYLTRANSFERASE A-RELATEDcoord: 1..73
score: 3.1
NoneNo IPR availableunknownSSF53756UDP-Glycosyltransferase/glycogen phosphorylasecoord: 1..74
score: 2.73

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G206310CSPI03G18430Wild cucumber (PI 183967)cpicuB120
Csa3G206310Cucsa.244390Cucumber (Gy14) v1cgycuB350
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G206310Melon (DHL92) v3.5.1cumeB166
Csa3G206310Melon (DHL92) v3.5.1cumeB195
Csa3G206310Melon (DHL92) v3.5.1cumeB265
Csa3G206310Watermelon (Charleston Gray)cuwcgB211
Csa3G206310Watermelon (Charleston Gray)cuwcgB215
Csa3G206310Watermelon (Charleston Gray)cuwcgB230
Csa3G206310Watermelon (97103) v1cuwmB243
Csa3G206310Watermelon (97103) v1cuwmB270
Csa3G206310Cucurbita pepo (Zucchini)cpecuB205
Csa3G206310Cucurbita pepo (Zucchini)cpecuB242
Csa3G206310Cucurbita pepo (Zucchini)cpecuB389
Csa3G206310Bottle gourd (USVL1VR-Ls)culsiB189
Csa3G206310Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G206310Cucumber (Gy14) v2cgybcuB109
Csa3G206310Cucumber (Gy14) v2cgybcuB307
Csa3G206310Melon (DHL92) v3.6.1cumedB181
Csa3G206310Melon (DHL92) v3.6.1cumedB238
Csa3G206310Melon (DHL92) v3.6.1cumedB255
Csa3G206310Silver-seed gourdcarcuB0232
Csa3G206310Silver-seed gourdcarcuB0400
Csa3G206310Silver-seed gourdcarcuB0675
Csa3G206310Watermelon (97103) v2cuwmbB198
Csa3G206310Watermelon (97103) v2cuwmbB215
Csa3G206310Wax gourdcuwgoB283
Csa3G206310Cucumber (Chinese Long) v2cucuB129
Csa3G206310Cucumber (Gy14) v1cgycuB320
Csa3G206310Cucurbita maxima (Rimu)cmacuB128
Csa3G206310Cucurbita maxima (Rimu)cmacuB320
Csa3G206310Cucurbita maxima (Rimu)cmacuB513
Csa3G206310Cucurbita maxima (Rimu)cmacuB697
Csa3G206310Cucurbita moschata (Rifu)cmocuB117
Csa3G206310Cucurbita moschata (Rifu)cmocuB307
Csa3G206310Cucurbita moschata (Rifu)cmocuB504
Csa3G206310Cucurbita moschata (Rifu)cmocuB687