Csa3G206310.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G206310.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Glycoprotein 3-alpha-L-fucosyltransferase A; contains IPR001503 (Glycosyl transferase, family 10)
Location	Chr3 : 14019925 .. 14020161 (-)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCGCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAGGTGCATTTTAA

mRNA sequence

ATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCGCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAGGTGCATTTTAA

Coding sequence (CDS)

ATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCGCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAGGTGCATTTTAA

Protein sequence

MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVTIDSYGSCHRNRDGSTGAF*

Homology

[Close]

BLAST of Csa3G206310.1 vs. Swiss-Prot
Match: FUT11_ARATH (Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-31
Identity = 66/74 (89.19%), Postives = 66/74 (89.19%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQ K+EKALAAAFISNC ARNFRL+ALEAL K NV 
Sbjct: 180 MTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCAARNFRLQALEALMKTNVK 239

Query: 61  IDSYGSCHRNRDGS 75
           IDSYG CHRNRDGS
Sbjct: 240 IDSYGGCHRNRDGS 253

[Close]

BLAST of Csa3G206310.1 vs. Swiss-Prot
Match: FUT12_ARATH (Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-30
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIM+PVQ K+E+A+AAAFISNCGARNFRL+ALEAL K N+ 
Sbjct: 191 MTTSLSSDVPVGYFSWAEYDIMSPVQPKTERAIAAAFISNCGARNFRLQALEALMKTNIK 250

Query: 61  IDSYGSCHRNRDG 74
           IDSYG CHRNRDG
Sbjct: 251 IDSYGGCHRNRDG 263

[Close]

BLAST of Csa3G206310.1 vs. TrEMBL
Match: A0A0A0L998_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G206310 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
          MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60

Query: 61 IDSYGSCHRNRDGSTGAF 79
          IDSYGSCHRNRDGSTGAF
Sbjct: 61 IDSYGSCHRNRDGSTGAF 78

[Close]

BLAST of Csa3G206310.1 vs. TrEMBL
Match: Q5DTC8_MEDSA (Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 184 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 243

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 244 IDSYGSCHRNRDG 256

[Close]

BLAST of Csa3G206310.1 vs. TrEMBL
Match: Q6Q5Y3_MEDTR (Core alpha 1,3-fucosyltransferase OS=Medicago truncatula GN=FUT2 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 183 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 242

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 243 IDSYGSCHRNRDG 255

[Close]

BLAST of Csa3G206310.1 vs. TrEMBL
Match: G7JL78_MEDTR (Glycoprotein 3-alpha-L-fucosyltransferase A OS=Medicago truncatula GN=MTR_4g086010 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 183 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 242

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 243 IDSYGSCHRNRDG 255

[Close]

BLAST of Csa3G206310.1 vs. TrEMBL
Match: Q5DTC9_MEDSA (Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 185 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 244

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 245 IDSYGSCHRNRDG 257

[Close]

BLAST of Csa3G206310.1 vs. TAIR10
Match: AT3G19280.1 (AT3G19280.1 fucosyltransferase 11)

HSP 1 Score: 136.0 bits (341), Expect = 1.0e-32
Identity = 66/74 (89.19%), Postives = 66/74 (89.19%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQ K+EKALAAAFISNC ARNFRL+ALEAL K NV 
Sbjct: 180 MTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCAARNFRLQALEALMKTNVK 239

Query: 61  IDSYGSCHRNRDGS 75
           IDSYG CHRNRDGS
Sbjct: 240 IDSYGGCHRNRDGS 253

[Close]

BLAST of Csa3G206310.1 vs. TAIR10
Match: AT1G49710.1 (AT1G49710.1 fucosyltransferase 12)

HSP 1 Score: 133.3 bits (334), Expect = 6.7e-32
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIM+PVQ K+E+A+AAAFISNCGARNFRL+ALEAL K N+ 
Sbjct: 191 MTTSLSSDVPVGYFSWAEYDIMSPVQPKTERAIAAAFISNCGARNFRLQALEALMKTNIK 250

Query: 61  IDSYGSCHRNRDG 74
           IDSYG CHRNRDG
Sbjct: 251 IDSYGGCHRNRDG 263

[Close]

BLAST of Csa3G206310.1 vs. NCBI nr
Match: gi|700202396|gb|KGN57529.1| (hypothetical protein Csa_3G206310 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
          MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60

Query: 61 IDSYGSCHRNRDGSTGAF 79
          IDSYGSCHRNRDGSTGAF
Sbjct: 61 IDSYGSCHRNRDGSTGAF 78

[Close]

BLAST of Csa3G206310.1 vs. NCBI nr
Match: gi|449446089|ref|XP_004140804.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 192 MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 251

Query: 61  IDSYGSCHRNRDGST 76
           IDSYGSCHRNRDGST
Sbjct: 252 IDSYGSCHRNRDGST 266

[Close]

BLAST of Csa3G206310.1 vs. NCBI nr
Match: gi|659112246|ref|XP_008456133.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 3.0e-34
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLN+T
Sbjct: 192 MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNIT 251

Query: 61  IDSYGSCHRNRDGST 76
           IDSYGSCHRNRDGST
Sbjct: 252 IDSYGSCHRNRDGST 266

[Close]

BLAST of Csa3G206310.1 vs. NCBI nr
Match: gi|672176107|ref|XP_008808123.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Phoenix dactylifera])

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-30
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP+Q KSE+ALAAAFISNCGARNFRL+ALE LEKLN+ 
Sbjct: 173 MTTSLSSDVPVGYFSWAEYDIMAPIQQKSEEALAAAFISNCGARNFRLQALEMLEKLNIK 232

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 233 IDSYGSCHRNRDG 245

[Close]

BLAST of Csa3G206310.1 vs. NCBI nr
Match: gi|37543464|gb|AAL99371.1| (alpha 1,3 fucosyltransferase [Medicago sativa])

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 184 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 243

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 244 IDSYGSCHRNRDG 256

The following BLAST results are available for this feature:

BLAST of Csa3G206310.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FUT11_ARATH	1.8e-31	89.19	Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=...	[more]
FUT12_ARATH	1.2e-30	84.93	Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 S...	[more]

BLAST of Csa3G206310.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L998_CUCSA	2.3e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G206310 PE=4 SV=1	[more]
Q5DTC8_MEDSA	1.8e-30	89.04	Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1	[more]
Q6Q5Y3_MEDTR	1.8e-30	89.04	Core alpha 1,3-fucosyltransferase OS=Medicago truncatula GN=FUT2 PE=3 SV=1	[more]
G7JL78_MEDTR	1.8e-30	89.04	Glycoprotein 3-alpha-L-fucosyltransferase A OS=Medicago truncatula GN=MTR_4g0860...	[more]
Q5DTC9_MEDSA	1.8e-30	89.04	Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1	[more]

BLAST of Csa3G206310.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19280.1	1.0e-32	89.19	fucosyltransferase 11	[more]
AT1G49710.1	6.7e-32	84.93	fucosyltransferase 12	[more]

BLAST of Csa3G206310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202396\|gb\|KGN57529.1\|	3.2e-36	100.00	hypothetical protein Csa_3G206310 [Cucumis sativus]	[more]
gi\|449446089\|ref\|XP_004140804.1\|	2.3e-34	100.00	PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A [Cucumis sativus]	[more]
gi\|659112246\|ref\|XP_008456133.1\|	3.0e-34	98.67	PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo]	[more]
gi\|672176107\|ref\|XP_008808123.1\|	2.0e-30	90.41	PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Phoenix dactylifera...	[more]
gi\|37543464\|gb\|AAL99371.1\|	2.7e-30	89.04	alpha 1,3 fucosyltransferase [Medicago sativa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001503	Glyco_trans_10

Vocabulary: **Biological Process**
Term	Definition
GO:0006486	protein glycosylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0008417	fucosyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0036065	fucosylation
cellular_component	GO:0016020	membrane
cellular_component	GO:0032580	Golgi cisterna membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008417	fucosyltransferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G206310	Csa3G206310	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa3G206310.1	Csa3G206310.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G206310.1.cds1	Csa3G206310.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001503	Glycosyl transferase family 10	PANTHER	PTHR11929	ALPHA- 1,3 -FUCOSYLTRANSFERASE	coord: 1..73 score: 3.1
None	No IPR available	PANTHER	PTHR11929:SF148	GLYCOPROTEIN 3-ALPHA-L-FUCOSYLTRANSFERASE A-RELATED	coord: 1..73 score: 3.1
None	No IPR available	unknown	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase	coord: 1..74 score: 2.73