Cucsa.244390 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.244390
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionAlpha 1,3 fucosyltransferase
Locationscaffold02135 : 219292 .. 219517 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCACGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAG

mRNA sequence

ATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCACGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAG

Coding sequence (CDS)

ATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCACGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAG

Protein sequence

MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVTIDSYGSCHRNRDGSTX
Homology
[Close]
BLAST of Cucsa.244390 vs. Swiss-Prot
Match: FUT11_ARATH (Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-31
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQ K+EKALAAAFISNC ARNFRL+ALEAL K NV 
Sbjct: 180 MTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCAARNFRLQALEALMKTNVK 239

Query: 61  IDSYGSCHRNRDGS 75
           IDSYG CHRNRDGS
Sbjct: 240 IDSYGGCHRNRDGS 253

[Close]
BLAST of Cucsa.244390 vs. Swiss-Prot
Match: FUT12_ARATH (Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-30
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIM+PVQ K+E+A+AAAFISNCGARNFRL+ALEAL K N+ 
Sbjct: 191 MTTSLSSDVPVGYFSWAEYDIMSPVQPKTERAIAAAFISNCGARNFRLQALEALMKTNIK 250

Query: 61  IDSYGSCHRNRDG 74
           IDSYG CHRNRDG
Sbjct: 251 IDSYGGCHRNRDG 263

[Close]
BLAST of Cucsa.244390 vs. TrEMBL
Match: A0A0A0L998_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G206310 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
          MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60

Query: 61 IDSYGSCHRNRDGST 76
          IDSYGSCHRNRDGST
Sbjct: 61 IDSYGSCHRNRDGST 75

[Close]
BLAST of Cucsa.244390 vs. TrEMBL
Match: Q5DTC9_MEDSA (Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 185 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 244

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 245 IDSYGSCHRNRDG 257

[Close]
BLAST of Cucsa.244390 vs. TrEMBL
Match: Q5DTC8_MEDSA (Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 184 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 243

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 244 IDSYGSCHRNRDG 256

[Close]
BLAST of Cucsa.244390 vs. TrEMBL
Match: Q6Q5Y3_MEDTR (Core alpha 1,3-fucosyltransferase OS=Medicago truncatula GN=FUT2 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 183 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 242

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 243 IDSYGSCHRNRDG 255

[Close]
BLAST of Cucsa.244390 vs. TrEMBL
Match: G7JL78_MEDTR (Glycoprotein 3-alpha-L-fucosyltransferase A OS=Medicago truncatula GN=MTR_4g086010 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 183 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 242

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 243 IDSYGSCHRNRDG 255

[Close]
BLAST of Cucsa.244390 vs. TAIR10
Match: AT3G19280.1 (AT3G19280.1 fucosyltransferase 11)

HSP 1 Score: 136.0 bits (341), Expect = 1.0e-32
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQ K+EKALAAAFISNC ARNFRL+ALEAL K NV 
Sbjct: 180 MTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCAARNFRLQALEALMKTNVK 239

Query: 61  IDSYGSCHRNRDGS 75
           IDSYG CHRNRDGS
Sbjct: 240 IDSYGGCHRNRDGS 253

[Close]
BLAST of Cucsa.244390 vs. TAIR10
Match: AT1G49710.1 (AT1G49710.1 fucosyltransferase 12)

HSP 1 Score: 133.3 bits (334), Expect = 6.5e-32
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIM+PVQ K+E+A+AAAFISNCGARNFRL+ALEAL K N+ 
Sbjct: 191 MTTSLSSDVPVGYFSWAEYDIMSPVQPKTERAIAAAFISNCGARNFRLQALEALMKTNIK 250

Query: 61  IDSYGSCHRNRDG 74
           IDSYG CHRNRDG
Sbjct: 251 IDSYGGCHRNRDG 263

[Close]
BLAST of Cucsa.244390 vs. NCBI nr
Match: gi|449446089|ref|XP_004140804.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 192 MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 251

Query: 61  IDSYGSCHRNRDGST 76
           IDSYGSCHRNRDGST
Sbjct: 252 IDSYGSCHRNRDGST 266

[Close]
BLAST of Cucsa.244390 vs. NCBI nr
Match: gi|700202396|gb|KGN57529.1| (hypothetical protein Csa_3G206310 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
          MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60

Query: 61 IDSYGSCHRNRDGST 76
          IDSYGSCHRNRDGST
Sbjct: 61 IDSYGSCHRNRDGST 75

[Close]
BLAST of Cucsa.244390 vs. NCBI nr
Match: gi|659112246|ref|XP_008456133.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-34
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLN+T
Sbjct: 192 MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNIT 251

Query: 61  IDSYGSCHRNRDGST 76
           IDSYGSCHRNRDGST
Sbjct: 252 IDSYGSCHRNRDGST 266

[Close]
BLAST of Cucsa.244390 vs. NCBI nr
Match: gi|672176107|ref|XP_008808123.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Phoenix dactylifera])

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-30
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP+Q KSE+ALAAAFISNCGARNFRL+ALE LEKLN+ 
Sbjct: 173 MTTSLSSDVPVGYFSWAEYDIMAPIQQKSEEALAAAFISNCGARNFRLQALEMLEKLNIK 232

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 233 IDSYGSCHRNRDG 245

[Close]
BLAST of Cucsa.244390 vs. NCBI nr
Match: gi|37543464|gb|AAL99371.1| (alpha 1,3 fucosyltransferase [Medicago sativa])

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 184 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 243

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 244 IDSYGSCHRNRDG 256

The following BLAST results are available for this feature:
BLAST of Cucsa.244390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FUT11_ARATH1.8e-3189.19Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=... [more]
FUT12_ARATH1.1e-3084.93Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 S... [more]
BLAST of Cucsa.244390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L998_CUCSA1.6e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G206310 PE=4 SV=1[more]
Q5DTC9_MEDSA1.8e-3089.04Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1[more]
Q5DTC8_MEDSA1.8e-3089.04Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1[more]
Q6Q5Y3_MEDTR1.8e-3089.04Core alpha 1,3-fucosyltransferase OS=Medicago truncatula GN=FUT2 PE=3 SV=1[more]
G7JL78_MEDTR1.8e-3089.04Glycoprotein 3-alpha-L-fucosyltransferase A OS=Medicago truncatula GN=MTR_4g0860... [more]
BLAST of Cucsa.244390 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19280.11.0e-3289.19 fucosyltransferase 11[more]
AT1G49710.16.5e-3284.93 fucosyltransferase 12[more]
BLAST of Cucsa.244390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446089|ref|XP_004140804.1|2.2e-34100.00PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A [Cucumis sativus][more]
gi|700202396|gb|KGN57529.1|2.2e-34100.00hypothetical protein Csa_3G206310 [Cucumis sativus][more]
gi|659112246|ref|XP_008456133.1|2.9e-3498.67PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo][more]
gi|672176107|ref|XP_008808123.1|2.0e-3090.41PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Phoenix dactylifera... [more]
gi|37543464|gb|AAL99371.1|2.6e-3089.04alpha 1,3 fucosyltransferase [Medicago sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001503Glyco_trans_10
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
Vocabulary: Molecular Function
TermDefinition
GO:0008417fucosyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0036065 fucosylation
biological_process GO:0006486 protein glycosylation
cellular_component GO:0032580 Golgi cisterna membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0008417 fucosyltransferase activity
molecular_function GO:0018392 glycoprotein 3-alpha-L-fucosyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.244390.1Cucsa.244390.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001503Glycosyl transferase family 10PANTHERPTHR11929ALPHA- 1,3 -FUCOSYLTRANSFERASEcoord: 1..73
score: 3.1
NoneNo IPR availablePANTHERPTHR11929:SF148GLYCOPROTEIN 3-ALPHA-L-FUCOSYLTRANSFERASE A-RELATEDcoord: 1..73
score: 3.1
NoneNo IPR availableunknownSSF53756UDP-Glycosyltransferase/glycogen phosphorylasecoord: 1..73
score: 3.77

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.244390Csa3G206310Cucumber (Chinese Long) v2cgycuB350
Cucsa.244390MELO3C018453Melon (DHL92) v3.5.1cgymeB416
Cucsa.244390CSPI03G18430Wild cucumber (PI 183967)cgycpiB366
Cucsa.244390Cp4.1LG14g04250Cucurbita pepo (Zucchini)cgycpeB0652
Cucsa.244390MELO3C018453.2Melon (DHL92) v3.6.1cgymedB411
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.244390Cucsa.219830Cucumber (Gy14) v1cgycgyB117
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.244390Cucurbita maxima (Rimu)cgycmaB0684
Cucsa.244390Cucurbita maxima (Rimu)cgycmaB0685
Cucsa.244390Cucurbita maxima (Rimu)cgycmaB0686
Cucsa.244390Cucurbita maxima (Rimu)cgycmaB0687
Cucsa.244390Cucurbita moschata (Rifu)cgycmoB0684
Cucsa.244390Cucurbita moschata (Rifu)cgycmoB0685
Cucsa.244390Cucurbita moschata (Rifu)cgycmoB0686
Cucsa.244390Cucurbita moschata (Rifu)cgycmoB0687
Cucsa.244390Wild cucumber (PI 183967)cgycpiB367
Cucsa.244390Cucumber (Chinese Long) v2cgycuB351
Cucsa.244390Melon (DHL92) v3.5.1cgymeB417
Cucsa.244390Watermelon (Charleston Gray)cgywcgB432
Cucsa.244390Watermelon (Charleston Gray)cgywcgB433
Cucsa.244390Watermelon (97103) v1cgywmB462
Cucsa.244390Watermelon (97103) v1cgywmB463
Cucsa.244390Cucurbita pepo (Zucchini)cgycpeB0653
Cucsa.244390Cucurbita pepo (Zucchini)cgycpeB0654
Cucsa.244390Bottle gourd (USVL1VR-Ls)cgylsiB403
Cucsa.244390Bottle gourd (USVL1VR-Ls)cgylsiB404
Cucsa.244390Melon (DHL92) v3.6.1cgymedB412
Cucsa.244390Silver-seed gourdcarcgyB0253
Cucsa.244390Silver-seed gourdcarcgyB0436
Cucsa.244390Silver-seed gourdcarcgyB0734
Cucsa.244390Cucumber (Chinese Long) v3cgycucB369
Cucsa.244390Cucumber (Chinese Long) v3cgycucB370
Cucsa.244390Watermelon (97103) v2cgywmbB434
Cucsa.244390Watermelon (97103) v2cgywmbB435
Cucsa.244390Wax gourdcgywgoB493
Cucsa.244390Wax gourdcgywgoB494