CSPI03G18430 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G18430
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Alpha 1,3 fucosyltransferase
Location	Chr3 : 14107124 .. 14107372 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAGTATAGTAATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCGCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAGGTGCATTTTAA

mRNA sequence

ATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCGCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAGGTGCATTTTAA

Coding sequence (CDS)

ATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCGCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAGGTGCATTTTAA

Homology

[Close]

BLAST of CSPI03G18430 vs. Swiss-Prot
Match: FUT11_ARATH (Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-31
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQ K+EKALAAAFISNC ARNFRL+ALEAL K NV 
Sbjct: 180 MTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCAARNFRLQALEALMKTNVK 239

Query: 61  IDSYGSCHRNRDGS 75
           IDSYG CHRNRDGS
Sbjct: 240 IDSYGGCHRNRDGS 253

[Close]

BLAST of CSPI03G18430 vs. Swiss-Prot
Match: FUT12_ARATH (Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.0e-31
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIM+PVQ K+E+A+AAAFISNCGARNFRL+ALEAL K N+ 
Sbjct: 191 MTTSLSSDVPVGYFSWAEYDIMSPVQPKTERAIAAAFISNCGARNFRLQALEALMKTNIK 250

Query: 61  IDSYGSCHRNRDG 74
           IDSYG CHRNRDG
Sbjct: 251 IDSYGGCHRNRDG 263

[Close]

BLAST of CSPI03G18430 vs. TrEMBL
Match: A0A0A0L998_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G206310 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
          MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60

Query: 61 IDSYGSCHRNRDGSTGAF 79
          IDSYGSCHRNRDGSTGAF
Sbjct: 61 IDSYGSCHRNRDGSTGAF 78

[Close]

BLAST of CSPI03G18430 vs. TrEMBL
Match: Q5DTC9_MEDSA (Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 185 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 244

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 245 IDSYGSCHRNRDG 257

[Close]

BLAST of CSPI03G18430 vs. TrEMBL
Match: Q5DTC8_MEDSA (Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 184 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 243

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 244 IDSYGSCHRNRDG 256

[Close]

BLAST of CSPI03G18430 vs. TrEMBL
Match: Q6Q5Y3_MEDTR (Core alpha 1,3-fucosyltransferase OS=Medicago truncatula GN=FUT2 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 183 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 242

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 243 IDSYGSCHRNRDG 255

[Close]

BLAST of CSPI03G18430 vs. TrEMBL
Match: G7JL78_MEDTR (Glycoprotein 3-alpha-L-fucosyltransferase A OS=Medicago truncatula GN=MTR_4g086010 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 183 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 242

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 243 IDSYGSCHRNRDG 255

[Close]

BLAST of CSPI03G18430 vs. TAIR10
Match: AT3G19280.1 (AT3G19280.1 fucosyltransferase 11)

HSP 1 Score: 136.7 bits (343), Expect = 6.1e-33
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQ K+EKALAAAFISNC ARNFRL+ALEAL K NV 
Sbjct: 180 MTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCAARNFRLQALEALMKTNVK 239

Query: 61  IDSYGSCHRNRDGS 75
           IDSYG CHRNRDGS
Sbjct: 240 IDSYGGCHRNRDGS 253

[Close]

BLAST of CSPI03G18430 vs. TAIR10
Match: AT1G49710.1 (AT1G49710.1 fucosyltransferase 12)

HSP 1 Score: 134.0 bits (336), Expect = 3.9e-32
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIM+PVQ K+E+A+AAAFISNCGARNFRL+ALEAL K N+ 
Sbjct: 191 MTTSLSSDVPVGYFSWAEYDIMSPVQPKTERAIAAAFISNCGARNFRLQALEALMKTNIK 250

Query: 61  IDSYGSCHRNRDG 74
           IDSYG CHRNRDG
Sbjct: 251 IDSYGGCHRNRDG 263

[Close]

BLAST of CSPI03G18430 vs. NCBI nr
Match: gi|700202396|gb|KGN57529.1| (hypothetical protein Csa_3G206310 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
          MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 1  MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60

Query: 61 IDSYGSCHRNRDGSTGAF 79
          IDSYGSCHRNRDGSTGAF
Sbjct: 61 IDSYGSCHRNRDGSTGAF 78

[Close]

BLAST of CSPI03G18430 vs. NCBI nr
Match: gi|449446089|ref|XP_004140804.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT
Sbjct: 192 MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 251

Query: 61  IDSYGSCHRNRDGST 76
           IDSYGSCHRNRDGST
Sbjct: 252 IDSYGSCHRNRDGST 266

[Close]

BLAST of CSPI03G18430 vs. NCBI nr
Match: gi|659112246|ref|XP_008456133.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLN+T
Sbjct: 192 MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNIT 251

Query: 61  IDSYGSCHRNRDGST 76
           IDSYGSCHRNRDGST
Sbjct: 252 IDSYGSCHRNRDGST 266

[Close]

BLAST of CSPI03G18430 vs. NCBI nr
Match: gi|672176107|ref|XP_008808123.1| (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Phoenix dactylifera])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP+Q KSE+ALAAAFISNCGARNFRL+ALE LEKLN+ 
Sbjct: 173 MTTSLSSDVPVGYFSWAEYDIMAPIQQKSEEALAAAFISNCGARNFRLQALEMLEKLNIK 232

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 233 IDSYGSCHRNRDG 245

[Close]

BLAST of CSPI03G18430 vs. NCBI nr
Match: gi|37543464|gb|AAL99371.1| (alpha 1,3 fucosyltransferase [Medicago sativa])

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   MTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVT 60
           MTTSLSSDVPVGYFSWAEYDIMAP++ K+EKALAAAFISNCGARNFRL+ALEALEK N++
Sbjct: 184 MTTSLSSDVPVGYFSWAEYDIMAPIKPKTEKALAAAFISNCGARNFRLQALEALEKTNIS 243

Query: 61  IDSYGSCHRNRDG 74
           IDSYGSCHRNRDG
Sbjct: 244 IDSYGSCHRNRDG 256

The following BLAST results are available for this feature:

BLAST of CSPI03G18430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FUT11_ARATH	1.1e-31	89.19	Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=...	[more]
FUT12_ARATH	7.0e-31	84.93	Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 S...	[more]

BLAST of CSPI03G18430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L998_CUCSA	1.0e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G206310 PE=4 SV=1	[more]
Q5DTC9_MEDSA	1.1e-30	89.04	Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1	[more]
Q5DTC8_MEDSA	1.1e-30	89.04	Alpha 1,3 fucosyltransferase OS=Medicago sativa PE=2 SV=1	[more]
Q6Q5Y3_MEDTR	1.1e-30	89.04	Core alpha 1,3-fucosyltransferase OS=Medicago truncatula GN=FUT2 PE=3 SV=1	[more]
G7JL78_MEDTR	1.1e-30	89.04	Glycoprotein 3-alpha-L-fucosyltransferase A OS=Medicago truncatula GN=MTR_4g0860...	[more]

BLAST of CSPI03G18430 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19280.1	6.1e-33	89.19	fucosyltransferase 11	[more]
AT1G49710.1	3.9e-32	84.93	fucosyltransferase 12	[more]

BLAST of CSPI03G18430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202396\|gb\|KGN57529.1\|	1.5e-36	100.00	hypothetical protein Csa_3G206310 [Cucumis sativus]	[more]
gi\|449446089\|ref\|XP_004140804.1\|	1.4e-34	100.00	PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A [Cucumis sativus]	[more]
gi\|659112246\|ref\|XP_008456133.1\|	1.8e-34	98.67	PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo]	[more]
gi\|672176107\|ref\|XP_008808123.1\|	1.2e-30	90.41	PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Phoenix dactylifera...	[more]
gi\|37543464\|gb\|AAL99371.1\|	1.6e-30	89.04	alpha 1,3 fucosyltransferase [Medicago sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001503	Glyco_trans_10

Vocabulary: **Biological Process**
Term	Definition
GO:0006486	protein glycosylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0008417	fucosyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0036065	fucosylation
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0032580	Golgi cisterna membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0008417	fucosyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G18430.1	CSPI03G18430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001503	Glycosyl transferase family 10	PANTHER	PTHR11929	ALPHA- 1,3 -FUCOSYLTRANSFERASE	coord: 1..73 score: 3.1
None	No IPR available	PANTHER	PTHR11929:SF148	GLYCOPROTEIN 3-ALPHA-L-FUCOSYLTRANSFERASE A-RELATED	coord: 1..73 score: 3.1
None	No IPR available	unknown	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase	coord: 1..74 score: 2.73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G18430	Csa3G206310	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G18430	Cucsa.244390	Cucumber (Gy14) v1	cgycpiB366

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G18430	Cucumber (Chinese Long) v3	cpicucB193
CSPI03G18430	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G18430	Watermelon (97103) v2	cpiwmbB203
CSPI03G18430	Watermelon (97103) v2	cpiwmbB221
CSPI03G18430	Wax gourd	cpiwgoB283
CSPI03G18430	Wild cucumber (PI 183967)	cpicpiB144
CSPI03G18430	Cucumber (Gy14) v1	cgycpiB333
CSPI03G18430	Cucurbita maxima (Rimu)	cmacpiB125
CSPI03G18430	Cucurbita maxima (Rimu)	cmacpiB326
CSPI03G18430	Cucurbita maxima (Rimu)	cmacpiB520
CSPI03G18430	Cucurbita maxima (Rimu)	cmacpiB705
CSPI03G18430	Cucurbita moschata (Rifu)	cmocpiB120
CSPI03G18430	Cucurbita moschata (Rifu)	cmocpiB315
CSPI03G18430	Cucurbita moschata (Rifu)	cmocpiB510
CSPI03G18430	Cucurbita moschata (Rifu)	cmocpiB698
CSPI03G18430	Cucumber (Chinese Long) v2	cpicuB165
CSPI03G18430	Melon (DHL92) v3.5.1	cpimeB241
CSPI03G18430	Watermelon (Charleston Gray)	cpiwcgB217
CSPI03G18430	Watermelon (Charleston Gray)	cpiwcgB237
CSPI03G18430	Watermelon (97103) v1	cpiwmB242
CSPI03G18430	Watermelon (97103) v1	cpiwmB271
CSPI03G18430	Cucurbita pepo (Zucchini)	cpecpiB208
CSPI03G18430	Cucurbita pepo (Zucchini)	cpecpiB388
CSPI03G18430	Bottle gourd (USVL1VR-Ls)	cpilsiB188
CSPI03G18430	Bottle gourd (USVL1VR-Ls)	cpilsiB209
CSPI03G18430	Melon (DHL92) v3.6.1	cpimedB239
CSPI03G18430	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G18430	Cucumber (Gy14) v2	cgybcpiB315
CSPI03G18430	Silver-seed gourd	carcpiB0405
CSPI03G18430	Silver-seed gourd	carcpiB0685