Csa3G129650 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G129650
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 8332861 .. 8333350 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTCTAATTATTGTAGTTTTAGGATAGGCAATGCTCCAAACACCCTCAATATAGTTCTTGTGGAAGAGATTACTAACCCTCACAAATCGGCTGGGTAGTTTTCCCTAGTCATCATGTTCTTCAAAGTTAATTATAGAATATAGTAAGAAGTATCCTTACAAGTGGGGTAGCAGAGCATGCATCCAGGAGAGGTGGAAGAAGATGACACAGAAATGGACAGAGGTACATTTGGGAGCAACTGAGGCTGAAATTGGAGGAATGAGTAAGAATATGGCTACCTGTTTTGGGAAAAAATATGAAACAAATGATAGAGGAGATGCATTCGTTGCACATGATGATGAAAACGAAGTATGGCAAACGACTTTCATCTGGCAAACGGGCGGTTTGGAGGAGGAAGAACTGCCTCCGATTGATGATATGATAGATGTTGGGAATGGTCTCAAAAGAAGGAAACTGTCACAACAGTTTTCCCTTTACTAGCTAGTTTGA

mRNA sequence

ATGACACAGAAATGGACAGAGGTACATTTGGGAGCAACTGAGGCTGAAATTGGAGGAATGAGTAAGAATATGGCTACCTGTTTTGGGAAAAAATATGAAACAAATGATAGAGGAGATGCATTCGTTGCACATGATGATGAAAACGAAGTATGGCAAACGACTTTCATCTGGCAAACGGGCGGTTTGGAGGAGGAAGAACTGCCTCCGATTGATGATATGATAGATGTTGGGAATGGTCTCAAAAGAAGGAAACTGTCACAACAGTTTTCCCTTTACTAG

Coding sequence (CDS)

ATGACACAGAAATGGACAGAGGTACATTTGGGAGCAACTGAGGCTGAAATTGGAGGAATGAGTAAGAATATGGCTACCTGTTTTGGGAAAAAATATGAAACAAATGATAGAGGAGATGCATTCGTTGCACATGATGATGAAAACGAAGTATGGCAAACGACTTTCATCTGGCAAACGGGCGGTTTGGAGGAGGAAGAACTGCCTCCGATTGATGATATGATAGATGTTGGGAATGGTCTCAAAAGAAGGAAACTGTCACAACAGTTTTCCCTTTACTAG

Protein sequence

MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTGGLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY*

Homology

[Close]

BLAST of Csa3G129650 vs. TrEMBL
Match: A0A0A0L4L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129650 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-47
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60
          MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG
Sbjct: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60

Query: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 93
          GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY
Sbjct: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 92

[Close]

BLAST of Csa3G129650 vs. NCBI nr
Match: gi|700201575|gb|KGN56708.1| (hypothetical protein Csa_3G129650 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-47
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60
          MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG
Sbjct: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60

Query: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 93
          GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY
Sbjct: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 92

The following BLAST results are available for this feature:

BLAST of Csa3G129650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4L5_CUCSA	1.5e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129650 PE=4 SV=1	[more]

BLAST of Csa3G129650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201575\|gb\|KGN56708.1\|	2.2e-47	100.00	hypothetical protein Csa_3G129650 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU101388	cucumber EST collection version 3.0	transcribed_cluster
CU107942	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G129650.1	Csa3G129650.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU101388	CU101388	transcribed_cluster
CU107942	CU107942	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 82..92 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G129650	MELO3C006290	Melon (DHL92) v3.5.1	cumeB236
Csa3G129650	MELO3C006290.2	Melon (DHL92) v3.6.1	cumedB223
Csa3G129650	CSPI03G10570	Wild cucumber (PI 183967)	cpicuB120
Csa3G129650	CsGy3G010650	Cucumber (Gy14) v2	cgybcuB109

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G129650	Wax gourd	cuwgoB270
Csa3G129650	Cucumber (Gy14) v1	cgycuB366
Csa3G129650	Cucurbita maxima (Rimu)	cmacuB253
Csa3G129650	Cucurbita maxima (Rimu)	cmacuB357
Csa3G129650	Cucurbita maxima (Rimu)	cmacuB814
Csa3G129650	Cucurbita moschata (Rifu)	cmocuB239
Csa3G129650	Cucurbita moschata (Rifu)	cmocuB348
Csa3G129650	Cucurbita moschata (Rifu)	cmocuB806
Csa3G129650	Cucurbita moschata (Rifu)	cmocuB872
Csa3G129650	Watermelon (Charleston Gray)	cuwcgB222
Csa3G129650	Watermelon (97103) v1	cuwmB233
Csa3G129650	Cucurbita pepo (Zucchini)	cpecuB135
Csa3G129650	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G129650	Cucurbita pepo (Zucchini)	cpecuB859
Csa3G129650	Bottle gourd (USVL1VR-Ls)	culsiB209
Csa3G129650	Silver-seed gourd	carcuB0257
Csa3G129650	Silver-seed gourd	carcuB0975
Csa3G129650	Silver-seed gourd	carcuB1093
Csa3G129650	Watermelon (97103) v2	cuwmbB204
Csa3G129650	Watermelon (97103) v2	cuwmbB231