Csa3G129650.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G129650.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 8332861 .. 8333350 (-)
Sequence length279
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCTCTAATTATTGTAGTTTTAGGATAGGCAATGCTCCAAACACCCTCAATATAGTTCTTGTGGAAGAGATTACTAACCCTCACAAATCGGCTGGGTAGTTTTCCCTAGTCATCATGTTCTTCAAAGTTAATTATAGAATATAGTAAGAAGTATCCTTACAAGTGGGGTAGCAGAGCATGCATCCAGGAGAGGTGGAAGAAGATGACACAGAAATGGACAGAGGTACATTTGGGAGCAACTGAGGCTGAAATTGGAGGAATGAGTAAGAATATGGCTACCTGTTTTGGGAAAAAATATGAAACAAATGATAGAGGAGATGCATTCGTTGCACATGATGATGAAAACGAAGTATGGCAAACGACTTTCATCTGGCAAACGGGCGGTTTGGAGGAGGAAGAACTGCCTCCGATTGATGATATGATAGATGTTGGGAATGGTCTCAAAAGAAGGAAACTGTCACAACAGTTTTCCCTTTACTAGCTAGTTTGA

mRNA sequence

ATGACACAGAAATGGACAGAGGTACATTTGGGAGCAACTGAGGCTGAAATTGGAGGAATGAGTAAGAATATGGCTACCTGTTTTGGGAAAAAATATGAAACAAATGATAGAGGAGATGCATTCGTTGCACATGATGATGAAAACGAAGTATGGCAAACGACTTTCATCTGGCAAACGGGCGGTTTGGAGGAGGAAGAACTGCCTCCGATTGATGATATGATAGATGTTGGGAATGGTCTCAAAAGAAGGAAACTGTCACAACAGTTTTCCCTTTACTAG

Coding sequence (CDS)

ATGACACAGAAATGGACAGAGGTACATTTGGGAGCAACTGAGGCTGAAATTGGAGGAATGAGTAAGAATATGGCTACCTGTTTTGGGAAAAAATATGAAACAAATGATAGAGGAGATGCATTCGTTGCACATGATGATGAAAACGAAGTATGGCAAACGACTTTCATCTGGCAAACGGGCGGTTTGGAGGAGGAAGAACTGCCTCCGATTGATGATATGATAGATGTTGGGAATGGTCTCAAAAGAAGGAAACTGTCACAACAGTTTTCCCTTTACTAG

Protein sequence

MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTGGLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY*
Homology
[Close]
BLAST of Csa3G129650.1 vs. TrEMBL
Match: A0A0A0L4L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129650 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-47
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60
          MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG
Sbjct: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60

Query: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 93
          GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY
Sbjct: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 92

[Close]
BLAST of Csa3G129650.1 vs. NCBI nr
Match: gi|700201575|gb|KGN56708.1| (hypothetical protein Csa_3G129650 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-47
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60
          MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG
Sbjct: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60

Query: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 93
          GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY
Sbjct: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 92

The following BLAST results are available for this feature:
BLAST of Csa3G129650.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4L5_CUCSA1.5e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129650 PE=4 SV=1[more]
BLAST of Csa3G129650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201575|gb|KGN56708.1|2.2e-47100.00hypothetical protein Csa_3G129650 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G129650Csa3G129650gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G129650.1Csa3G129650.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G129650.1.utr3p1Csa3G129650.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G129650.1.cds1Csa3G129650.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G129650.1.utr5p1Csa3G129650.1.utr5p1five_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 82..92
scor