Csa2G360760 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G360760
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 17114671 .. 17115105 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTATGTCACCTCAACCTTATTCAGTCGAAAAAAAGATCGCCGGAGATCAAGTGGAGGCAGAGATAGAAACAGAGTCGGCGGCGGCGGGTGCGGGTGCGGATGCGTTGGGCCCAGCTGTGACGAGGCATATTGTGGTCAAGTCTTCGTCTTCGTCTTCGTCCTATCAATCCAACCAAGCTCTAGAGAAAGCGGTGGTGCTGAGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTGAGGGCGGCGGTTGGAGCTCTGTTTAGTTCACCGTTCACTGATAAAACAGAGAGAAAATGGGTGGACGAACCGTTCACTTCACTCTAATTCCAATTTTGTTATAAAATTAAGAAATTAGTGGAAGAGGTCAGATTTTTCTTTTTTAAACTTATTTATCCATCCAAATCAGATTGCATTATAATGGCTTCGTTG

mRNA sequence

ATGGCGGCTATGTCACCTCAACCTTATTCAGTCGAAAAAAAGATCGCCGGAGATCAAGTGGAGGCAGAGATAGAAACAGAGTCGGCGGCGGCGGGTGCGGGTGCGGATGCGTTGGGCCCAGCTGTGACGAGGCATATTGTGGTCAAGTCTTCGTCTTCGTCTTCGTCCTATCAATCCAACCAAGCTCTAGAGAAAGCGGTGGTGCTGAGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTGAGGGCGGCGGTTGGAGCTCTGTTTAGTTCACCGTTCACTGATAAAACAGAGAGAAAATGGGTGGACGAACCGTTCACTTCACTCTAA

Coding sequence (CDS)

ATGGCGGCTATGTCACCTCAACCTTATTCAGTCGAAAAAAAGATCGCCGGAGATCAAGTGGAGGCAGAGATAGAAACAGAGTCGGCGGCGGCGGGTGCGGGTGCGGATGCGTTGGGCCCAGCTGTGACGAGGCATATTGTGGTCAAGTCTTCGTCTTCGTCTTCGTCCTATCAATCCAACCAAGCTCTAGAGAAAGCGGTGGTGCTGAGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTGAGGGCGGCGGTTGGAGCTCTGTTTAGTTCACCGTTCACTGATAAAACAGAGAGAAAATGGGTGGACGAACCGTTCACTTCACTCTAA

Protein sequence

MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSNQALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL*

Homology

[Close]

BLAST of Csa2G360760 vs. TrEMBL
Match: A0A0A0LNJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360760 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-51
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60
           MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 110
           QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 109

[Close]

BLAST of Csa2G360760 vs. TrEMBL
Match: A0A0S3RBC4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G039900 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-06
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 23  EIETESAAAGAGADAL--------GPAVTRHIVVKSSSSSSSYQSNQALEKAVVLRRIRQ 82
           E+ET S+  G   D L          +VTR + +K + +S      + L+K VVLRRIR 
Sbjct: 19  EMETVSSERGTEEDELLGELEKKDSLSVTRQLCIKPTHNS------EKLDKEVVLRRIRH 78

Query: 83  RKRVNKLRAAVGA-LFSSPFTDKTE--RKWVDEPFTSL 110
           RKR+NK+R+AVG  LFS+  +D     +KWVD+ F +L
Sbjct: 79  RKRMNKIRSAVGGFLFSTTTSDAAAQGKKWVDDAFAAL 110

[Close]

BLAST of Csa2G360760 vs. TrEMBL
Match: A0A0L9V8Z9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g021000 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-06
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 23  EIETESAAAGAGADAL--------GPAVTRHIVVKSSSSSSSYQSNQALEKAVVLRRIRQ 82
           E+ET S+  G   D L          +VTR + +K + +S      + L+K VVLRRIR 
Sbjct: 19  EMETVSSERGTEEDELLGELEKKDSLSVTRQLCIKPTHNS------EKLDKEVVLRRIRH 78

Query: 83  RKRVNKLRAAVGA-LFSSPFTDKTE--RKWVDEPFTSL 110
           RKR+NK+R+AVG  LFS+  +D     +KWVD+ F +L
Sbjct: 79  RKRMNKIRSAVGGFLFSTTTSDAAAQGKKWVDDAFAAL 110

[Close]

BLAST of Csa2G360760 vs. TrEMBL
Match: M5XKB4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024104mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-06
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 42  VTRHIVVKSSSSSSSYQSNQALEKAVVLRRIRQRKRVNKLRAAVGA-LFSSPFTDKT-ER 101
           V+ H+ +K + +S      Q L+K VVLRRIRQRKRVN++RAA+ A L SSPF+    E 
Sbjct: 43  VSSHVHIKPTHTS------QPLDKDVVLRRIRQRKRVNRVRAALQALLISSPFSPPVHEN 102

Query: 102 KWVDEPFTS 109
           KWVD+ F +
Sbjct: 103 KWVDDAFAA 105

[Close]

BLAST of Csa2G360760 vs. NCBI nr
Match: gi|700207440|gb|KGN62559.1| (hypothetical protein Csa_2G360760 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.9e-51
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60
           MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 110
           QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTERKWVDEPFTSL 109

[Close]

BLAST of Csa2G360760 vs. NCBI nr
Match: gi|950977000|ref|XP_014501406.1| (PREDICTED: uncharacterized protein LOC106762168 [Vigna radiata var. radiata])

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-06
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 23  EIETESAAAGAGADAL--------GPAVTRHIVVKSSSSSSSYQSNQALEKAVVLRRIRQ 82
           E+ET S+  G   D L          +VTR + +K + SS      + L+K VVLRRIR 
Sbjct: 19  EMETVSSERGTEEDELLGELEKKESLSVTRQLCIKPTHSS------EKLDKEVVLRRIRH 78

Query: 83  RKRVNKLRAAVGA-LFSSPFTDKTE--RKWVDEPFTSL 110
           RKR+NK+R+AVG  LFS+  +D     +KWVD+ F +L
Sbjct: 79  RKRMNKIRSAVGGFLFSTTTSDAAAQGKKWVDDAFAAL 110

[Close]

BLAST of Csa2G360760 vs. NCBI nr
Match: gi|920710302|gb|KOM51551.1| (hypothetical protein LR48_Vigan09g021000 [Vigna angularis])

HSP 1 Score: 58.9 bits (141), Expect = 6.3e-06
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 23  EIETESAAAGAGADAL--------GPAVTRHIVVKSSSSSSSYQSNQALEKAVVLRRIRQ 82
           E+ET S+  G   D L          +VTR + +K + +S      + L+K VVLRRIR 
Sbjct: 19  EMETVSSERGTEEDELLGELEKKDSLSVTRQLCIKPTHNS------EKLDKEVVLRRIRH 78

Query: 83  RKRVNKLRAAVGA-LFSSPFTDKTE--RKWVDEPFTSL 110
           RKR+NK+R+AVG  LFS+  +D     +KWVD+ F +L
Sbjct: 79  RKRMNKIRSAVGGFLFSTTTSDAAAQGKKWVDDAFAAL 110

The following BLAST results are available for this feature:

BLAST of Csa2G360760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNJ0_CUCSA	2.0e-51	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360760 PE=4 SV=1	[more]
A0A0S3RBC4_PHAAN	4.4e-06	40.82	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G039900 PE=...	[more]
A0A0L9V8Z9_PHAAN	4.4e-06	40.82	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g021000 PE=4 SV=1	[more]
M5XKB4_PRUPE	7.5e-06	50.72	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024104mg PE=4 SV=1	[more]

BLAST of Csa2G360760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207440\|gb\|KGN62559.1\|	2.9e-51	100.00	hypothetical protein Csa_2G360760 [Cucumis sativus]	[more]
gi\|950977000\|ref\|XP_014501406.1\|	2.8e-06	41.84	PREDICTED: uncharacterized protein LOC106762168 [Vigna radiata var. radiata]	[more]
gi\|920710302\|gb\|KOM51551.1\|	6.3e-06	40.82	hypothetical protein LR48_Vigan09g021000 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G360760.1	Csa2G360760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35324	FAMILY NOT NAMED	coord: 9..109 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G360760	Cla022528	Watermelon (97103) v1	cuwmB111
Csa2G360760	MELO3C010908	Melon (DHL92) v3.5.1	cumeB117
Csa2G360760	ClCG08G015480	Watermelon (Charleston Gray)	cuwcgB169
Csa2G360760	Lsi08G014280	Bottle gourd (USVL1VR-Ls)	culsiB142
Csa2G360760	MELO3C010908.2	Melon (DHL92) v3.6.1	cumedB114
Csa2G360760	Cla97C08G159040	Watermelon (97103) v2	cuwmbB163
Csa2G360760	Bhi04G000265	Wax gourd	cuwgoB162
Csa2G360760	CSPI02G19610	Wild cucumber (PI 183967)	cpicuB065
Csa2G360760	CmaCh12G005040	Cucurbita maxima (Rimu)	cmacuB174
Csa2G360760	CmaCh05G002150	Cucurbita maxima (Rimu)	cmacuB784
Csa2G360760	CmoCh05G002220	Cucurbita moschata (Rifu)	cmocuB777
Csa2G360760	CmoCh12G004470	Cucurbita moschata (Rifu)	cmocuB158
Csa2G360760	Cp4.1LG07g04590	Cucurbita pepo (Zucchini)	cpecuB819
Csa2G360760	Cp4.1LG11g01610	Cucurbita pepo (Zucchini)	cpecuB096
Csa2G360760	Carg11828	Silver-seed gourd	carcuB0202
Csa2G360760	Carg04081	Silver-seed gourd	carcuB0989

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G360760	Cucurbita maxima (Rimu)	cmacuB011
Csa2G360760	Cucurbita maxima (Rimu)	cmacuB546
Csa2G360760	Cucurbita maxima (Rimu)	cmacuB654
Csa2G360760	Cucurbita maxima (Rimu)	cmacuB851
Csa2G360760	Cucurbita moschata (Rifu)	cmocuB002
Csa2G360760	Cucurbita moschata (Rifu)	cmocuB424
Csa2G360760	Cucurbita moschata (Rifu)	cmocuB838
Csa2G360760	Melon (DHL92) v3.5.1	cumeB149
Csa2G360760	Melon (DHL92) v3.5.1	cumeB157
Csa2G360760	Watermelon (Charleston Gray)	cuwcgB117
Csa2G360760	Watermelon (Charleston Gray)	cuwcgB140
Csa2G360760	Watermelon (97103) v1	cuwmB126
Csa2G360760	Cucurbita pepo (Zucchini)	cpecuB539
Csa2G360760	Cucurbita pepo (Zucchini)	cpecuB771
Csa2G360760	Bottle gourd (USVL1VR-Ls)	culsiB107
Csa2G360760	Cucumber (Gy14) v2	cgybcuB057
Csa2G360760	Cucumber (Gy14) v2	cgybcuB253
Csa2G360760	Cucumber (Gy14) v2	cgybcuB297
Csa2G360760	Melon (DHL92) v3.6.1	cumedB141
Csa2G360760	Melon (DHL92) v3.6.1	cumedB149
Csa2G360760	Silver-seed gourd	carcuB0110
Csa2G360760	Silver-seed gourd	carcuB0433
Csa2G360760	Silver-seed gourd	carcuB0819
Csa2G360760	Watermelon (97103) v2	cuwmbB101
Csa2G360760	Watermelon (97103) v2	cuwmbB135
Csa2G360760	Wax gourd	cuwgoB188
Csa2G360760	Wax gourd	cuwgoB198
Csa2G360760	Cucumber (Chinese Long) v2	cucuB051
Csa2G360760	Cucumber (Chinese Long) v2	cucuB062
Csa2G360760	Cucumber (Chinese Long) v2	cucuB075
Csa2G360760	Cucumber (Chinese Long) v2	cucuB079
Csa2G360760	Cucumber (Gy14) v1	cgycuB116
Csa2G360760	Cucumber (Gy14) v1	cgycuB162
Csa2G360760	Cucumber (Gy14) v1	cgycuB326
Csa2G360760	Cucumber (Gy14) v1	cgycuB476