CmoCh12G004470 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G004470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr12 : 2741820 .. 2742104 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTATATCACCTCAGTCTTATCCTGTCGGAGATCAAGAAAAGGAGAAGACGGTGGCAGACGCGGCGGCGAGCCCAGATGTGACGAGGCATATTCGGTTGAAGTCTTCACATTCCACCCAAGTACTAGAGAAGGCGGTGGTGCTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCGGGCAGTGGTCGGAGCTCTGTTCAGTTCGCCGTTCGGCGACAAAACCGGCGAGGCTCGTCAGAGAAAATGGGTGGATGAACCCTTCACTTCACTCTAG

mRNA sequence

ATGGCGGCTATATCACCTCAGTCTTATCCTGTCGGAGATCAAGAAAAGGAGAAGACGGTGGCAGACGCGGCGGCGAGCCCAGATGTGACGAGGCATATTCGGTTGAAGTCTTCACATTCCACCCAAGTACTAGAGAAGGCGGTGGTGCTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCGGGCAGTGGTCGGAGCTCTGTTCAGTTCGCCGTTCGGCGACAAAACCGGCGAGGCTCGTCAGAGAAAATGGGTGGATGAACCCTTCACTTCACTCTAG

Coding sequence (CDS)

ATGGCGGCTATATCACCTCAGTCTTATCCTGTCGGAGATCAAGAAAAGGAGAAGACGGTGGCAGACGCGGCGGCGAGCCCAGATGTGACGAGGCATATTCGGTTGAAGTCTTCACATTCCACCCAAGTACTAGAGAAGGCGGTGGTGCTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCGGGCAGTGGTCGGAGCTCTGTTCAGTTCGCCGTTCGGCGACAAAACCGGCGAGGCTCGTCAGAGAAAATGGGTGGATGAACCCTTCACTTCACTCTAG
Homology
[Close]
BLAST of CmoCh12G004470 vs. TrEMBL
Match: A0A0A0LNJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360760 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-20
Identity = 70/113 (61.95%), Postives = 74/113 (65.49%), Query Frame = 1 

Query: 1   MAAISPQSYPV-----GDQ-----EKEKTVADAAAS---PDVTRHIRLKSSHST------ 60
           MAA+SPQ Y V     GDQ     E E   A A A    P VTRHI +KSS S+      
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QVLEKAVVLRRIRQRKRVNKFRAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 95
           Q LEKAVVLRRIRQRKRVNK RA VGALFSSPF DKT    +RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

[Close]
BLAST of CmoCh12G004470 vs. TrEMBL
Match: A0A0S3RBC4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G039900 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-07
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 11  VGDQEKEKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFRAVVGA-L 70
           +G+ EK+ +++       VTR + +K +H+++ L+K VVLRRIR RKR+NK R+ VG  L
Sbjct: 35  LGELEKKDSLS-------VTRQLCIKPTHNSEKLDKEVVLRRIRHRKRMNKIRSAVGGFL 94

Query: 71  FSSPFGDKTGEARQRKWVDEPFTSL 95
           FS+   D    A+ +KWVD+ F +L
Sbjct: 95  FSTTTSD--AAAQGKKWVDDAFAAL 110

[Close]
BLAST of CmoCh12G004470 vs. TrEMBL
Match: A0A0L9V8Z9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g021000 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-07
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 11  VGDQEKEKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFRAVVGA-L 70
           +G+ EK+ +++       VTR + +K +H+++ L+K VVLRRIR RKR+NK R+ VG  L
Sbjct: 35  LGELEKKDSLS-------VTRQLCIKPTHNSEKLDKEVVLRRIRHRKRMNKIRSAVGGFL 94

Query: 71  FSSPFGDKTGEARQRKWVDEPFTSL 95
           FS+   D    A+ +KWVD+ F +L
Sbjct: 95  FSTTTSD--AAAQGKKWVDDAFAAL 110

[Close]
BLAST of CmoCh12G004470 vs. TrEMBL
Match: M5XKB4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024104mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.8e-07
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 4   ISPQSYPVGDQEKEKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFR 63
           +S  S  + +++++        +  V+ H+ +K +H++Q L+K VVLRRIRQRKRVN+ R
Sbjct: 18  LSIASISLEEEQEDPAATHHGHNNYVSSHVHIKPTHTSQPLDKDVVLRRIRQRKRVNRVR 77

Query: 64  AVVGA-LFSSPFGDKTGEARQRKWVDEPFTS 94
           A + A L SSPF     E    KWVD+ F +
Sbjct: 78  AALQALLISSPFSPPVHE---NKWVDDAFAA 105

[Close]
BLAST of CmoCh12G004470 vs. TrEMBL
Match: A0A067KQF0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04366 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.9e-07
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 1 

Query: 22  DAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFRAVVGALFSSPFGDKTGEA 81
           DA     VT H+ LK +H  + L+K +VLRRIRQRKR NK RA +  LF  P   KT   
Sbjct: 30  DAENLNAVTSHVYLKPAHRNETLDKEMVLRRIRQRKRHNKVRATLQRLFGPPVSSKTDNI 89

Query: 82  RQRKWVDEPFTS 94
             R WVD+ F +
Sbjct: 90  SIR-WVDDAFAA 100

[Close]
BLAST of CmoCh12G004470 vs. NCBI nr
Match: gi|700207440|gb|KGN62559.1| (hypothetical protein Csa_2G360760 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 8.6e-20
Identity = 70/113 (61.95%), Postives = 74/113 (65.49%), Query Frame = 1 

Query: 1   MAAISPQSYPV-----GDQ-----EKEKTVADAAAS---PDVTRHIRLKSSHST------ 60
           MAA+SPQ Y V     GDQ     E E   A A A    P VTRHI +KSS S+      
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSN 60

Query: 61  QVLEKAVVLRRIRQRKRVNKFRAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 95
           Q LEKAVVLRRIRQRKRVNK RA VGALFSSPF DKT    +RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

[Close]
BLAST of CmoCh12G004470 vs. NCBI nr
Match: gi|950977000|ref|XP_014501406.1| (PREDICTED: uncharacterized protein LOC106762168 [Vigna radiata var. radiata])

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1 

Query: 11  VGDQEKEKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFRAVVGA-L 70
           +G+ EK+++++       VTR + +K +HS++ L+K VVLRRIR RKR+NK R+ VG  L
Sbjct: 35  LGELEKKESLS-------VTRQLCIKPTHSSEKLDKEVVLRRIRHRKRMNKIRSAVGGFL 94

Query: 71  FSSPFGDKTGEARQRKWVDEPFTSL 95
           FS+   D    A+ +KWVD+ F +L
Sbjct: 95  FSTTTSD--AAAQGKKWVDDAFAAL 110

[Close]
BLAST of CmoCh12G004470 vs. NCBI nr
Match: gi|920710302|gb|KOM51551.1| (hypothetical protein LR48_Vigan09g021000 [Vigna angularis])

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-07
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 11  VGDQEKEKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFRAVVGA-L 70
           +G+ EK+ +++       VTR + +K +H+++ L+K VVLRRIR RKR+NK R+ VG  L
Sbjct: 35  LGELEKKDSLS-------VTRQLCIKPTHNSEKLDKEVVLRRIRHRKRMNKIRSAVGGFL 94

Query: 71  FSSPFGDKTGEARQRKWVDEPFTSL 95
           FS+   D    A+ +KWVD+ F +L
Sbjct: 95  FSTTTSD--AAAQGKKWVDDAFAAL 110

[Close]
BLAST of CmoCh12G004470 vs. NCBI nr
Match: gi|596253919|ref|XP_007224762.1| (hypothetical protein PRUPE_ppa024104mg [Prunus persica])

HSP 1 Score: 61.6 bits (148), Expect = 8.4e-07
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 4   ISPQSYPVGDQEKEKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFR 63
           +S  S  + +++++        +  V+ H+ +K +H++Q L+K VVLRRIRQRKRVN+ R
Sbjct: 18  LSIASISLEEEQEDPAATHHGHNNYVSSHVHIKPTHTSQPLDKDVVLRRIRQRKRVNRVR 77

Query: 64  AVVGA-LFSSPFGDKTGEARQRKWVDEPFTS 94
           A + A L SSPF     E    KWVD+ F +
Sbjct: 78  AALQALLISSPFSPPVHE---NKWVDDAFAA 105

[Close]
BLAST of CmoCh12G004470 vs. NCBI nr
Match: gi|643731103|gb|KDP38441.1| (hypothetical protein JCGZ_04366 [Jatropha curcas])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 1 

Query: 22  DAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFRAVVGALFSSPFGDKTGEA 81
           DA     VT H+ LK +H  + L+K +VLRRIRQRKR NK RA +  LF  P   KT   
Sbjct: 30  DAENLNAVTSHVYLKPAHRNETLDKEMVLRRIRQRKRHNKVRATLQRLFGPPVSSKTDNI 89

Query: 82  RQRKWVDEPFTS 94
             R WVD+ F +
Sbjct: 90  SIR-WVDDAFAA 100

The following BLAST results are available for this feature:
BLAST of CmoCh12G004470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh12G004470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNJ0_CUCSA6.0e-2061.95Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360760 PE=4 SV=1[more]
A0A0S3RBC4_PHAAN4.5e-0742.35Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G039900 PE=... [more]
A0A0L9V8Z9_PHAAN4.5e-0742.35Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g021000 PE=4 SV=1[more]
M5XKB4_PRUPE5.8e-0739.56Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024104mg PE=4 SV=1[more]
A0A067KQF0_JATCU9.9e-0747.22Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04366 PE=4 SV=1[more]
BLAST of CmoCh12G004470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh12G004470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207440|gb|KGN62559.1|8.6e-2061.95hypothetical protein Csa_2G360760 [Cucumis sativus][more]
gi|950977000|ref|XP_014501406.1|1.7e-0743.53PREDICTED: uncharacterized protein LOC106762168 [Vigna radiata var. radiata][more]
gi|920710302|gb|KOM51551.1|6.4e-0742.35hypothetical protein LR48_Vigan09g021000 [Vigna angularis][more]
gi|596253919|ref|XP_007224762.1|8.4e-0739.56hypothetical protein PRUPE_ppa024104mg [Prunus persica][more]
gi|643731103|gb|KDP38441.1|1.4e-0647.22hypothetical protein JCGZ_04366 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G004470.1CmoCh12G004470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35324FAMILY NOT NAMEDcoord: 29..94
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G004470CmaCh05G002150Cucurbita maxima (Rimu)cmacmoB770
CmoCh12G004470CmaCh12G005040Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G004470Cla022528Watermelon (97103) v1cmowmB134
CmoCh12G004470Csa2G360760Cucumber (Chinese Long) v2cmocuB158
CmoCh12G004470MELO3C010908Melon (DHL92) v3.5.1cmomeB146
CmoCh12G004470ClCG08G015480Watermelon (Charleston Gray)cmowcgB161
CmoCh12G004470CSPI02G19610Wild cucumber (PI 183967)cmocpiB160
CmoCh12G004470Lsi08G014280Bottle gourd (USVL1VR-Ls)cmolsiB175
CmoCh12G004470Cp4.1LG11g01610Cucurbita pepo (Zucchini)cmocpeB154
CmoCh12G004470Cp4.1LG07g04590Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G004470MELO3C010908.2Melon (DHL92) v3.6.1cmomedB161
CmoCh12G004470CsaV3_2G028310Cucumber (Chinese Long) v3cmocucB0186
CmoCh12G004470Cla97C08G159040Watermelon (97103) v2cmowmbB178
CmoCh12G004470Bhi04G000265Wax gourdcmowgoB0190
CmoCh12G004470Carg04081Silver-seed gourdcarcmoB1310
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G004470Watermelon (97103) v2cmowmbB147
CmoCh12G004470Watermelon (97103) v2cmowmbB166
CmoCh12G004470Cucurbita moschata (Rifu)cmocmoB004
CmoCh12G004470Cucurbita moschata (Rifu)cmocmoB141
CmoCh12G004470Cucurbita moschata (Rifu)cmocmoB156
CmoCh12G004470Cucumber (Gy14) v1cgycmoB0217
CmoCh12G004470Cucumber (Gy14) v1cgycmoB0641
CmoCh12G004470Cucumber (Gy14) v1cgycmoB0925
CmoCh12G004470Cucurbita maxima (Rimu)cmacmoB032
CmoCh12G004470Cucurbita maxima (Rimu)cmacmoB453
CmoCh12G004470Cucurbita maxima (Rimu)cmacmoB636
CmoCh12G004470Wild cucumber (PI 183967)cmocpiB170
CmoCh12G004470Wild cucumber (PI 183967)cmocpiB182
CmoCh12G004470Cucumber (Chinese Long) v2cmocuB167
CmoCh12G004470Watermelon (Charleston Gray)cmowcgB149
CmoCh12G004470Watermelon (97103) v1cmowmB145
CmoCh12G004470Cucurbita pepo (Zucchini)cmocpeB166
CmoCh12G004470Cucurbita pepo (Zucchini)cmocpeB172
CmoCh12G004470Cucumber (Gy14) v2cgybcmoB171
CmoCh12G004470Melon (DHL92) v3.6.1cmomedB192
CmoCh12G004470Silver-seed gourdcarcmoB0145
CmoCh12G004470Silver-seed gourdcarcmoB0257
CmoCh12G004470Cucumber (Chinese Long) v3cmocucB0198