Carg04081 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04081
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone-lysine N-methyltransferase
Location	Cucurbita_argyrosperma_scaffold_011 : 1746710 .. 1746994 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTGTATCACCTCACTCTTATCCTGTCGGAGATCAAGAAAAGGACAAGACGGTTGCAGACGCGGCGGCGAGCCCAGATGTGACGAGGCATATTCGGTTGAAGTCTTCACATTCCACCCAAGTACTAGAGAAGGCGGTGGTGCTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCAGGCAGTGGTCGGAGCTCTGTTCAGTTCGCCTTTCGGCGACAAAACCGGCGAGGCTCGTCAGAGAAAATGGGTGGATGAACCCTTCACTTCACTCTAG

mRNA sequence

ATGGCGGCTGTATCACCTCACTCTTATCCTGTCGGAGATCAAGAAAAGGACAAGACGGTTGCAGACGCGGCGGCGAGCCCAGATGTGACGAGGCATATTCGGTTGAAGTCTTCACATTCCACCCAAGTACTAGAGAAGGCGGTGGTGCTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCAGGCAGTGGTCGGAGCTCTGTTCAGTTCGCCTTTCGGCGACAAAACCGGCGAGGCTCGTCAGAGAAAATGGGTGGATGAACCCTTCACTTCACTCTAG

Coding sequence (CDS)

ATGGCGGCTGTATCACCTCACTCTTATCCTGTCGGAGATCAAGAAAAGGACAAGACGGTTGCAGACGCGGCGGCGAGCCCAGATGTGACGAGGCATATTCGGTTGAAGTCTTCACATTCCACCCAAGTACTAGAGAAGGCGGTGGTGCTGCGGCGGATCCGGCAGCGGAAGCGTGTTAACAAGTTCCAGGCAGTGGTCGGAGCTCTGTTCAGTTCGCCTTTCGGCGACAAAACCGGCGAGGCTCGTCAGAGAAAATGGGTGGATGAACCCTTCACTTCACTCTAG

Protein sequence

MAAVSPHSYPVGDQEKDKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL

Homology

[Close]

BLAST of Carg04081 vs. NCBI nr
Match: KGN62559.1 (hypothetical protein Csa_2G360760 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 60/113 (53.10%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 1   MAAVSPHSYPV-----GDQEK--------DKTVADAAASPDVTRHI------RLKSSHST 60
           MAA+SP  Y V     GDQ +                  P VTRHI            S 
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAXXXXXXXXXXXXXXXLGPAVTRHIVVXXXXXXXXXQSN 60

Query: 61  QVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 95
           Q LEKAVVLRRIRQRKRVNK +A VGALFSSPF DKT    +RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

[Close]

BLAST of Carg04081 vs. NCBI nr
Match: XP_021670508.1 (uncharacterized protein LOC110657576 [Hevea brasiliensis])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 36/65 (55.38%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 29  VTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEARQRKWVD 88
           VT H+RLK +HSTQ L+K VVLRRIRQRKR NK +A V   F  P   KT      KWVD
Sbjct: 39  VTSHVRLKPAHSTQTLDKEVVLRRIRQRKRHNKVRAAVQGFFGLPVSSKTDNKVSVKWVD 98

Query: 89  EPFTS 94
           + F +
Sbjct: 99  DAFAA 103

[Close]

BLAST of Carg04081 vs. NCBI nr
Match: POF22437.1 (hypothetical protein CFP56_49761 [Quercus suber])

HSP 1 Score: 69.3 bits (168), Expect = 7.8e-09
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 29  VTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEA---RQRK 88
           VT H+ +K + STQ L+K VVLRRIRQRKRVNK++A+V AL SS F  K  +A    ++K
Sbjct: 37  VTSHLYIKPTDSTQTLDKEVVLRRIRQRKRVNKWKAMVQALVSSAFSAKPEKAVSIHEKK 96

Query: 89  WVDEPFTS 94
           W+D+ F +
Sbjct: 97  WIDDAFAA 104

[Close]

BLAST of Carg04081 vs. NCBI nr
Match: PIN19109.1 (hypothetical protein CDL12_08220 [Handroanthus impetiginosus])

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 29  VTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPF------GDKTGEAR 88
           VT H+ LK +H+T  L+K VVLRRIR RKRVNK ++ V ALFSSPF        KT    
Sbjct: 31  VTSHLYLKPAHTTGTLDKTVVLRRIRHRKRVNKVKSAVQALFSSPFTSVKTDDKKTSSVG 90

Query: 89  QRKWVDEPFTS 94
           Q +W D+ F +
Sbjct: 91  QIRWADDAFAA 101

[Close]

BLAST of Carg04081 vs. NCBI nr
Match: XP_021614020.1 (uncharacterized protein LOC110616030 [Manihot esculenta] >OAY50839.1 hypothetical protein MANES_05G166500 [Manihot esculenta])

HSP 1 Score: 65.9 bits (159), Expect = 8.6e-08
Identity = 35/73 (47.95%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 22  DAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEA 81
           +  +S  VT H+ LK +HS Q L K VVLRRIRQRKR NK +A V   F      KT + 
Sbjct: 33  EIGSSVPVTSHVLLKPAHSNQTLNKEVVLRRIRQRKRHNKVRAAVQGFFGLRDSSKTDDR 92

Query: 82  RQRKWVDEPFTSL 95
              KWVD+ F +L
Sbjct: 93  VSVKWVDDAFAAL 105

[Close]

BLAST of Carg04081 vs. TrEMBL
Match: tr|A0A0A0LNJ0|A0A0A0LNJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.2e-15
Identity = 60/113 (53.10%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 1   MAAVSPHSYPV-----GDQEK--------DKTVADAAASPDVTRHI------RLKSSHST 60
           MAA+SP  Y V     GDQ +                  P VTRHI            S 
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAXXXXXXXXXXXXXXXLGPAVTRHIVVXXXXXXXXXQSN 60

Query: 61  QVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 95
           Q LEKAVVLRRIRQRKRVNK +A VGALFSSPF DKT    +RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

[Close]

BLAST of Carg04081 vs. TrEMBL
Match: tr|A0A2N9G0R5|A0A2N9G0R5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-09
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 29  VTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGE--ARQRKW 88
           VT H+ +K +HSTQ L+K VVLRRIRQRKRVNK +A   AL SSPF  K  +    ++KW
Sbjct: 38  VTSHLYIKPTHSTQPLDKEVVLRRIRQRKRVNKVKATFQALVSSPFSAKPDKVSVHKKKW 97

Query: 89  VDEPFTSL 95
            D+ F +L
Sbjct: 98  ADDAFAAL 105

[Close]

BLAST of Carg04081 vs. TrEMBL
Match: tr|A0A2P4MY36|A0A2P4MY36_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_49761 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-09
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 29  VTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEA---RQRK 88
           VT H+ +K + STQ L+K VVLRRIRQRKRVNK++A+V AL SS F  K  +A    ++K
Sbjct: 37  VTSHLYIKPTDSTQTLDKEVVLRRIRQRKRVNKWKAMVQALVSSAFSAKPEKAVSIHEKK 96

Query: 89  WVDEPFTS 94
           W+D+ F +
Sbjct: 97  WIDDAFAA 104

[Close]

BLAST of Carg04081 vs. TrEMBL
Match: tr|A0A2G9HNK9|A0A2G9HNK9_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08220 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 29  VTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPF------GDKTGEAR 88
           VT H+ LK +H+T  L+K VVLRRIR RKRVNK ++ V ALFSSPF        KT    
Sbjct: 31  VTSHLYLKPAHTTGTLDKTVVLRRIRHRKRVNKVKSAVQALFSSPFTSVKTDDKKTSSVG 90

Query: 89  QRKWVDEPFTS 94
           Q +W D+ F +
Sbjct: 91  QIRWADDAFAA 101

[Close]

BLAST of Carg04081 vs. TrEMBL
Match: tr|A0A2C9VX00|A0A2C9VX00_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G166500 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-08
Identity = 35/73 (47.95%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 22  DAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFSSPFGDKTGEA 81
           +  +S  VT H+ LK +HS Q L K VVLRRIRQRKR NK +A V   F      KT + 
Sbjct: 33  EIGSSVPVTSHVLLKPAHSNQTLNKEVVLRRIRQRKRHNKVRAAVQGFFGLRDSSKTDDR 92

Query: 82  RQRKWVDEPFTSL 95
              KWVD+ F +L
Sbjct: 93  VSVKWVDDAFAAL 105

The following BLAST results are available for this feature:

BLAST of Carg04081 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62559.1	1.2e-14	53.10	hypothetical protein Csa_2G360760 [Cucumis sativus]	[more]
XP_021670508.1	1.2e-09	55.38	uncharacterized protein LOC110657576 [Hevea brasiliensis]	[more]
POF22437.1	7.8e-09	52.94	hypothetical protein CFP56_49761 [Quercus suber]	[more]
PIN19109.1	2.3e-08	50.70	hypothetical protein CDL12_08220 [Handroanthus impetiginosus]	[more]
XP_021614020.1	8.6e-08	47.95	uncharacterized protein LOC110616030 [Manihot esculenta] >OAY50839.1 hypothetica...	[more]

BLAST of Carg04081 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg04081 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04081 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNJ0\|A0A0A0LNJ0_CUCSA	8.2e-15	53.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1	[more]
tr\|A0A2N9G0R5\|A0A2N9G0R5_FAGSY	1.0e-09	54.41	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1	[more]
tr\|A0A2P4MY36\|A0A2P4MY36_QUESU	5.2e-09	52.94	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_49761 PE=4 SV=1	[more]
tr\|A0A2G9HNK9\|A0A2G9HNK9_9LAMI	1.5e-08	50.70	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08220 P...	[more]
tr\|A0A2C9VX00\|A0A2C9VX00_MANES	5.7e-08	47.95	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G166500 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04081-RA	Carg04081-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR35324:SF1	SUBFAMILY NOT NAMED	coord: 12..93
None	No IPR available	PANTHER	PTHR35324	FAMILY NOT NAMED	coord: 12..93

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04081	Cla022528	Watermelon (97103) v1	carwmB0978
Carg04081	Csa2G360760	Cucumber (Chinese Long) v2	carcuB0989
Carg04081	MELO3C010908	Melon (DHL92) v3.5.1	carmeB0953
Carg04081	ClCG08G015480	Watermelon (Charleston Gray)	carwcgB0958
Carg04081	CSPI02G19610	Wild cucumber (PI 183967)	carcpiB1012
Carg04081	CmaCh12G005040	Cucurbita maxima (Rimu)	carcmaB1349
Carg04081	CmaCh05G002150	Cucurbita maxima (Rimu)	carcmaB1357
Carg04081	CmoCh12G004470	Cucurbita moschata (Rifu)	carcmoB1310
Carg04081	Lsi08G014280	Bottle gourd (USVL1VR-Ls)	carlsiB898
Carg04081	Cp4.1LG07g04590	Cucurbita pepo (Zucchini)	carcpeB1368
Carg04081	Cp4.1LG11g01610	Cucurbita pepo (Zucchini)	carcpeB1352
Carg04081	MELO3C010908.2	Melon (DHL92) v3.6.1	carmedB0959
Carg04081	CsaV3_2G028310	Cucumber (Chinese Long) v3	carcucB1017
Carg04081	Cla97C08G159040	Watermelon (97103) v2	carwmbB1034
Carg04081	Bhi04G000265	Wax gourd	carwgoB1143

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04081	Silver-seed gourd	carcarB126
Carg04081	Silver-seed gourd	carcarB227
Carg04081	Cucumber (Gy14) v2	carcgybB0962
Carg04081	Cucumber (Gy14) v1	carcgyB1094