Cla97C08G159040 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G159040
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr08 : 26217306 .. 26217614 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTATGTCCCCTCAGCCTTATTCTGTCGAGAAGAAGATCGTCGGAGATCAAGAGGAGGCAGAGGCAGAAACAGAGGCGGCGGCGATAGGCCAAGCTGTGACGAGGCATATTGTGGTGAAGTCTTCGTCTTCTCAATCCAACCAAGCACTGGAGAAAGCGGTGGTGCTGCGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTCAGGGCGGTGGTTGGAGCTCTGTTCAGTTCACCGTTTACCGAAAAAACAGAGGAGACCCATCAGAGGAAATGGGTGGACGAACCCTTCACTTCACTCTAG

mRNA sequence

ATGGCGGCTATGTCCCCTCAGCCTTATTCTGTCGAGAAGAAGATCGTCGGAGATCAAGAGGAGGCAGAGGCAGAAACAGAGGCGGCGGCGATAGGCCAAGCTGTGACGAGGCATATTGTGGTGAAGTCTTCGTCTTCTCAATCCAACCAAGCACTGGAGAAAGCGGTGGTGCTGCGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTCAGGGCGGTGGTTGGAGCTCTGTTCAGTTCACCGTTTACCGAAAAAACAGAGGAGACCCATCAGAGGAAATGGGTGGACGAACCCTTCACTTCACTCTAG

Coding sequence (CDS)

ATGGCGGCTATGTCCCCTCAGCCTTATTCTGTCGAGAAGAAGATCGTCGGAGATCAAGAGGAGGCAGAGGCAGAAACAGAGGCGGCGGCGATAGGCCAAGCTGTGACGAGGCATATTGTGGTGAAGTCTTCGTCTTCTCAATCCAACCAAGCACTGGAGAAAGCGGTGGTGCTGCGGCGGATCCGGCAACGGAAGCGTGTTAACAAGTTCAGGGCGGTGGTTGGAGCTCTGTTCAGTTCACCGTTTACCGAAAAAACAGAGGAGACCCATCAGAGGAAATGGGTGGACGAACCCTTCACTTCACTCTAG

Protein sequence

MAAMSPQPYSVEKKIVGDQEEAEAETEAAAIGQAVTRHIVVKSSSSQSNQALEKAVVLRRIRQRKRVNKFRAVVGALFSSPFTEKTEETHQRKWVDEPFTSL

Homology

[Close]

BLAST of Cla97C08G159040 vs. NCBI nr
Match: KGN62559.1 (hypothetical protein Csa_2G360760 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 78/113 (69.03%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 1   MAAMSPQPYSVEKKIVGDQEEA-------EAETEAAAIGQAVTRHIVV----KSSSSQSN 60
           MAAMSPQPYSVEKKI GDQ EA               +G AVTRHIVV         QSN
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAXXXXXXXXXXXXXXXLGPAVTRHIVVXXXXXXXXXQSN 60

Query: 61  QALEKAVVLRRIRQRKRVNKFRAVVGALFSSPFTEKTEETHQRKWVDEPFTSL 103
           QALEKAVVLRRIRQRKRVNK RA VGALFSSPFT+KTE    RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTE----RKWVDEPFTSL 109

[Close]

BLAST of Cla97C08G159040 vs. NCBI nr
Match: XP_020984257.1 (uncharacterized protein LOC110274446 [Arachis duranensis])

HSP 1 Score: 72.8 bits (177), Expect = 7.7e-10
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 19  QEEAEAETEAAAIGQAVTRHIVVKSSSSQSNQALEKAVVLRRIRQRKRVNKFRAVVGALF 78
           +EE EAE E       VT  + +K S +Q    ++K VVLRRIR R+RVNK RA VG+ F
Sbjct: 14  REEDEAEFEKEESVPTVTSKLFLKPSENQKPGNMDKEVVLRRIRHRRRVNKVRAAVGSFF 73

Query: 79  SSPFTEKTEETHQRKWVDEPFTSL 103
           SSPF+      H RKWVD+PF +L
Sbjct: 74  SSPFS----TDHHRKWVDDPFAAL 93

[Close]

BLAST of Cla97C08G159040 vs. NCBI nr
Match: XP_025612539.1 (uncharacterized protein LOC112705787 [Arachis hypogaea])

HSP 1 Score: 72.8 bits (177), Expect = 7.7e-10
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 19  QEEAEAETEAAAIGQAVTRHIVVKSSSSQSNQALEKAVVLRRIRQRKRVNKFRAVVGALF 78
           +EE EAE E       VT  + +K S +Q    ++K VVLRRIR R+RVNK RA VG+ F
Sbjct: 14  REEDEAEFEKEESVPTVTSKLFLKPSENQKPGNMDKEVVLRRIRHRRRVNKVRAAVGSFF 73

Query: 79  SSPFTEKTEETHQRKWVDEPFTSL 103
           SSPF+      H RKWVD+PF +L
Sbjct: 74  SSPFS----TDHHRKWVDDPFAAL 93

[Close]

BLAST of Cla97C08G159040 vs. NCBI nr
Match: XP_020961870.1 (uncharacterized protein LOC107610174 isoform X2 [Arachis ipaensis] >XP_025666398.1 uncharacterized protein LOC112764817 isoform X1 [Arachis hypogaea])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 19  QEEAEAETEAAAIGQAVTRHIVVKSSSSQSNQALEKAVVLRRIRQRKRVNKFRAVVGALF 78
           +EE EAE E       VT  + +K S +Q    ++K VVLRRIR R+RVNK RA VG+ F
Sbjct: 14  REEDEAEFEKEESVPTVTSKLFLKPSENQKPGNMDKEVVLRRIRHRRRVNKVRAAVGSFF 73

Query: 79  SSPFTEKTEETHQRKWVDEPFTSL 103
           SSPF+      H RKW+D+PF +L
Sbjct: 74  SSPFS----TDHHRKWLDDPFAAL 93

[Close]

BLAST of Cla97C08G159040 vs. NCBI nr
Match: POF22437.1 (hypothetical protein CFP56_49761 [Quercus suber])

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 35  VTRHIVVKSSSSQSNQALEKAVVLRRIRQRKRVNKFRAVVGALFSSPFTEKTEET---HQ 94
           VT H+ +K   + S Q L+K VVLRRIRQRKRVNK++A+V AL SS F+ K E+    H+
Sbjct: 37  VTSHLYIK--PTDSTQTLDKEVVLRRIRQRKRVNKWKAMVQALVSSAFSAKPEKAVSIHE 96

Query: 95  RKWVDEPFTS 102
           +KW+D+ F +
Sbjct: 97  KKWIDDAFAA 104

[Close]

BLAST of Cla97C08G159040 vs. TrEMBL
Match: tr|A0A0A0LNJ0|A0A0A0LNJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.6e-26
Identity = 78/113 (69.03%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 1   MAAMSPQPYSVEKKIVGDQEEA-------EAETEAAAIGQAVTRHIVV----KSSSSQSN 60
           MAAMSPQPYSVEKKI GDQ EA               +G AVTRHIVV         QSN
Sbjct: 1   MAAMSPQPYSVEKKIAGDQVEAXXXXXXXXXXXXXXXLGPAVTRHIVVXXXXXXXXXQSN 60

Query: 61  QALEKAVVLRRIRQRKRVNKFRAVVGALFSSPFTEKTEETHQRKWVDEPFTSL 103
           QALEKAVVLRRIRQRKRVNK RA VGALFSSPFT+KTE    RKWVDEPFTSL
Sbjct: 61  QALEKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKTE----RKWVDEPFTSL 109

[Close]

BLAST of Cla97C08G159040 vs. TrEMBL
Match: tr|A0A2P4MY36|A0A2P4MY36_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_49761 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 35  VTRHIVVKSSSSQSNQALEKAVVLRRIRQRKRVNKFRAVVGALFSSPFTEKTEET---HQ 94
           VT H+ +K   + S Q L+K VVLRRIRQRKRVNK++A+V AL SS F+ K E+    H+
Sbjct: 37  VTSHLYIK--PTDSTQTLDKEVVLRRIRQRKRVNKWKAMVQALVSSAFSAKPEKAVSIHE 96

Query: 95  RKWVDEPFTS 102
           +KW+D+ F +
Sbjct: 97  KKWIDDAFAA 104

[Close]

BLAST of Cla97C08G159040 vs. TrEMBL
Match: tr|A0A2N9G0R5|A0A2N9G0R5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 15  IVGDQEEAEAETEAAAIGQAVTRHIVVKSSSSQSNQALEKAVVLRRIRQRKRVNKFRAVV 74
           I  D+E+   ET+       VT H+ +K   + S Q L+K VVLRRIRQRKRVNK +A  
Sbjct: 23  IAVDEEQEVPETQ-----NPVTSHLYIK--PTHSTQPLDKEVVLRRIRQRKRVNKVKATF 82

Query: 75  GALFSSPFTEKTEE--THQRKWVDEPFTSL 103
            AL SSPF+ K ++   H++KW D+ F +L
Sbjct: 83  QALVSSPFSAKPDKVSVHKKKWADDAFAAL 105

[Close]

BLAST of Cla97C08G159040 vs. TrEMBL
Match: tr|A0A2C9VX00|A0A2C9VX00_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G166500 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-06
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 35  VTRHIVVKSSSSQSNQALEKAVVLRRIRQRKRVNKFRAVVGALFSSPFTEKTEETHQRKW 94
           VT H+++K   + SNQ L K VVLRRIRQRKR NK RA V   F    + KT++    KW
Sbjct: 40  VTSHVLLK--PAHSNQTLNKEVVLRRIRQRKRHNKVRAAVQGFFGLRDSSKTDDRVSVKW 99

Query: 95  VDEPFTSL 103
           VD+ F +L
Sbjct: 100 VDDAFAAL 105

[Close]

BLAST of Cla97C08G159040 vs. TrEMBL
Match: tr|A0A2G9HNK9|A0A2G9HNK9_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08220 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 20  EEAEAETEAAAIGQAVTRHIVVKSSSSQSNQALEKAVVLRRIRQRKRVNKFRAVVGALFS 79
           E A+ E E       VT H+ +K   + +   L+K VVLRRIR RKRVNK ++ V ALFS
Sbjct: 16  EAAQEENELQEQENPVTSHLYLK--PAHTTGTLDKTVVLRRIRHRKRVNKVKSAVQALFS 75

Query: 80  SPFT------EKTEETHQRKWVDEPFTS 102
           SPFT      +KT    Q +W D+ F +
Sbjct: 76  SPFTSVKTDDKKTSSVGQIRWADDAFAA 101

The following BLAST results are available for this feature:

BLAST of Cla97C08G159040 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62559.1	1.0e-25	69.03	hypothetical protein Csa_2G360760 [Cucumis sativus]	[more]
XP_020984257.1	7.7e-10	50.00	uncharacterized protein LOC110274446 [Arachis duranensis]	[more]
XP_025612539.1	7.7e-10	50.00	uncharacterized protein LOC112705787 [Arachis hypogaea]	[more]
XP_020961870.1	1.7e-09	48.81	uncharacterized protein LOC107610174 isoform X2 [Arachis ipaensis] >XP_025666398...	[more]
POF22437.1	4.2e-08	51.43	hypothetical protein CFP56_49761 [Quercus suber]	[more]

BLAST of Cla97C08G159040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNJ0\|A0A0A0LNJ0_CUCSA	6.6e-26	69.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1	[more]
tr\|A0A2P4MY36\|A0A2P4MY36_QUESU	2.8e-08	51.43	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_49761 PE=4 SV=1	[more]
tr\|A0A2N9G0R5\|A0A2N9G0R5_FAGSY	3.6e-08	45.56	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1	[more]
tr\|A0A2C9VX00\|A0A2C9VX00_MANES	2.6e-06	50.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G166500 PE=4 SV=...	[more]
tr\|A0A2G9HNK9\|A0A2G9HNK9_9LAMI	4.4e-06	43.18	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08220 P...	[more]

BLAST of Cla97C08G159040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G159040 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G159040.1	Cla97C08G159040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35324	FAMILY NOT NAMED	coord: 7..101
None	No IPR available	PANTHER	PTHR35324:SF1	SUBFAMILY NOT NAMED	coord: 7..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G159040	Cla022528	Watermelon (97103) v1	wmwmbB100
Cla97C08G159040	Csa2G360760	Cucumber (Chinese Long) v2	cuwmbB163
Cla97C08G159040	MELO3C010908	Melon (DHL92) v3.5.1	mewmbB302
Cla97C08G159040	ClCG08G015480	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G159040	CSPI02G19610	Wild cucumber (PI 183967)	cpiwmbB166
Cla97C08G159040	CmaCh12G005040	Cucurbita maxima (Rimu)	cmawmbB194
Cla97C08G159040	CmaCh05G002150	Cucurbita maxima (Rimu)	cmawmbB832
Cla97C08G159040	CmoCh12G004470	Cucurbita moschata (Rifu)	cmowmbB178
Cla97C08G159040	Lsi08G014280	Bottle gourd (USVL1VR-Ls)	lsiwmbB444
Cla97C08G159040	MELO3C010908.2	Melon (DHL92) v3.6.1	medwmbB289
Cla97C08G159040	Carg04081	Silver-seed gourd	carwmbB1034
Cla97C08G159040	CsaV3_2G028310	Cucumber (Chinese Long) v3	cucwmbB164
Cla97C08G159040	Bhi04G000265	Wax gourd	wgowmbB313

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G159040	Wax gourd	wgowmbB447
Cla97C08G159040	Wax gourd	wgowmbB602
Cla97C08G159040	Watermelon (97103) v2	wmbwmbB039
Cla97C08G159040	Watermelon (97103) v2	wmbwmbB108
Cla97C08G159040	Watermelon (97103) v2	wmbwmbB142
Cla97C08G159040	Silver-seed gourd	carwmbB0109
Cla97C08G159040	Silver-seed gourd	carwmbB0190
Cla97C08G159040	Silver-seed gourd	carwmbB0434
Cla97C08G159040	Silver-seed gourd	carwmbB0850
Cla97C08G159040	Cucumber (Gy14) v2	cgybwmbB156
Cla97C08G159040	Cucumber (Gy14) v2	cgybwmbB471
Cla97C08G159040	Cucumber (Gy14) v1	cgywmbB134
Cla97C08G159040	Cucumber (Gy14) v1	cgywmbB409
Cla97C08G159040	Cucumber (Gy14) v1	cgywmbB590
Cla97C08G159040	Cucurbita maxima (Rimu)	cmawmbB035
Cla97C08G159040	Cucurbita maxima (Rimu)	cmawmbB504
Cla97C08G159040	Cucurbita maxima (Rimu)	cmawmbB702
Cla97C08G159040	Cucurbita maxima (Rimu)	cmawmbB907
Cla97C08G159040	Cucurbita moschata (Rifu)	cmowmbB023
Cla97C08G159040	Cucurbita moschata (Rifu)	cmowmbB128
Cla97C08G159040	Cucurbita moschata (Rifu)	cmowmbB486
Cla97C08G159040	Cucurbita moschata (Rifu)	cmowmbB802
Cla97C08G159040	Cucurbita moschata (Rifu)	cmowmbB877
Cla97C08G159040	Wild cucumber (PI 183967)	cpiwmbB256
Cla97C08G159040	Wild cucumber (PI 183967)	cpiwmbB521
Cla97C08G159040	Cucumber (Chinese Long) v3	cucwmbB250
Cla97C08G159040	Cucumber (Chinese Long) v3	cucwmbB513
Cla97C08G159040	Cucumber (Chinese Long) v2	cuwmbB248
Cla97C08G159040	Cucumber (Chinese Long) v2	cuwmbB495
Cla97C08G159040	Bottle gourd (USVL1VR-Ls)	lsiwmbB151
Cla97C08G159040	Melon (DHL92) v3.6.1	medwmbB548
Cla97C08G159040	Melon (DHL92) v3.5.1	mewmbB554
Cla97C08G159040	Watermelon (Charleston Gray)	wcgwmbB123
Cla97C08G159040	Watermelon (Charleston Gray)	wcgwmbB243
Cla97C08G159040	Watermelon (97103) v1	wmwmbB222
Cla97C08G159040	Watermelon (97103) v1	wmwmbB348