Csa2G279280 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G279280
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 13406290 .. 13407099 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATGGGTGCGGTCATGTAAGTGTTCTTCGCAATTTTACATCCCTTCCTTTTACCCTTTATCAATTAATCAATCAATTTAGAGATTTGATCTATTGATTTTGACGTTCGAATTGCTATCTACCTATCATTGATTGATTGAATTTGAAATTTGATTCAATAATTTTGTTATCTTCCCTCTCAATTCTTGTTTCTCCATTTTGGATGGGTTCAGTTTGCTTCTCTGTCTATTGTAATAAGAATTTCGTTATTGAATATAACAATAATGTGTGCAAAAACTGAAGAATGTTGAAAGGTTTGAAGTTCTTGGGTTTAGTTAGGGAAGATTTCTAATTTACTTACAGTGTCTCAAGTTTTGTTAATGCAAGATGTTTATGAAGGCTGGAAAACAACGAAATTTTATATTTGTGAAGTTTTTACAGAAAGGGGTTCTGTTCATATTCGACTTTCTATAGGTTGTAGCATTAGTTGTTTATGAATTAATATTGTTTTCCATTTTGGTGATAAGCTCTGTGTTTCAACAATTCATTCTTGGAAGTTTTGCACAGTGTTTTTAAGCTCTTGATGAGTTTTGGGCCGAAAGTAAAACCATTGATTCAGAATGGAAAATTACTTGACAAGTTGATTAGACTGTAATATATTTGTTGCTTGCAGCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTACTAGTACTACCAGCTCAACTTAG

mRNA sequence

ATGTTGGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATGGGTGCGGTCATCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTACTAGTACTACCAGCTCAACTTAG

Coding sequence (CDS)

ATGTTGGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATGGGTGCGGTCATCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTACTAGTACTACCAGCTCAACTTAG

Protein sequence

MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST*

Homology

[Close]

BLAST of Csa2G279280 vs. TrEMBL
Match: A0A0A0LPX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G279280 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.7e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST 58
          MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST
Sbjct: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST 57

[Close]

BLAST of Csa2G279280 vs. TrEMBL
Match: U5GB04_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14760g PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.7e-18
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTT 55
          M  RSRFLSFP+V+GAVIIGVVSGKAIFGPPLDEYWKKKL+EEAAAKET TS+T
Sbjct: 1  MFFRSRFLSFPLVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKETDTSST 54

[Close]

BLAST of Csa2G279280 vs. TrEMBL
Match: D6CH05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0988g00020 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.0e-17
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTST 54
          M GR RFLSFP+V+GAV+IGVVSGKAIFGPPLDEYWKKKL+EEAAAKET  S+
Sbjct: 1  MFGRRRFLSFPLVIGAVVIGVVSGKAIFGPPLDEYWKKKLQEEAAAKETDASS 53

[Close]

BLAST of Csa2G279280 vs. TrEMBL
Match: A0A061DHT2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000831 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.4e-16
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKE 49
          M  RSRFLSFPMV+GAVIIGVVSGKAIFGPPLDEYW+KKL+EEAAAKE
Sbjct: 1  MFRRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLQEEAAAKE 48

[Close]

BLAST of Csa2G279280 vs. TrEMBL
Match: K7KPI7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-15
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEE---AAAKETGTSTTSST 58
          M GR RFLSFPMV+GAVIIGVVSGKAIFGPPLDEYWKKK +EE   AAAKE  +++TS++
Sbjct: 33 MFGRRRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKQQEEVAAAAAKENDSTSTSTS 92

[Close]

BLAST of Csa2G279280 vs. TAIR10
Match: AT5G65880.1 (AT5G65880.1 unknown protein)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-15
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAA--AKE---TGTSTTS 58
          M  R+RFLS PMV+GAV+IGVVSGKAIFGPPLD+YWK+KLE E A  AKE     +S +S
Sbjct: 1  MFRRNRFLSLPMVIGAVVIGVVSGKAIFGPPLDQYWKEKLEREEAVVAKEEVIEKSSDSS 60

[Close]

BLAST of Csa2G279280 vs. NCBI nr
Match: gi|700206872|gb|KGN61991.1| (hypothetical protein Csa_2G279280 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST 58
          MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST
Sbjct: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST 57

[Close]

BLAST of Csa2G279280 vs. NCBI nr
Match: gi|566181362|ref|XP_006380825.1| (hypothetical protein POPTR_0007s14760g [Populus trichocarpa])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTT 55
          M  RSRFLSFP+V+GAVIIGVVSGKAIFGPPLDEYWKKKL+EEAAAKET TS+T
Sbjct: 1  MFFRSRFLSFPLVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKETDTSST 54

[Close]

BLAST of Csa2G279280 vs. NCBI nr
Match: gi|296083544|emb|CBI23537.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-17
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTST 54
          M GR RFLSFP+V+GAV+IGVVSGKAIFGPPLDEYWKKKL+EEAAAKET  S+
Sbjct: 1  MFGRRRFLSFPLVIGAVVIGVVSGKAIFGPPLDEYWKKKLQEEAAAKETDASS 53

[Close]

BLAST of Csa2G279280 vs. NCBI nr
Match: gi|702454674|ref|XP_010026538.1| (PREDICTED: uncharacterized protein LOC104416903 [Eucalyptus grandis])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 1   MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTT 55
           M GRSRFLSFP V+GAV+IGVVSGKAIFGPPLDEYWKKK EEEAA K T +S++
Sbjct: 60  MFGRSRFLSFPTVIGAVVIGVVSGKAIFGPPLDEYWKKKHEEEAAVKGTDSSSS 113

[Close]

BLAST of Csa2G279280 vs. NCBI nr
Match: gi|590705967|ref|XP_007047590.1| (Uncharacterized protein TCM_000831 [Theobroma cacao])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKE 49
          M  RSRFLSFPMV+GAVIIGVVSGKAIFGPPLDEYW+KKL+EEAAAKE
Sbjct: 1  MFRRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLQEEAAAKE 48

The following BLAST results are available for this feature:

BLAST of Csa2G279280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPX1_CUCSA	2.7e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G279280 PE=4 SV=1	[more]
U5GB04_POPTR	7.7e-18	87.04	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14760g PE=4 SV=1	[more]
D6CH05_VITVI	5.0e-17	83.02	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0988g00020 PE=4 SV=...	[more]
A0A061DHT2_THECC	9.4e-16	89.58	Uncharacterized protein OS=Theobroma cacao GN=TCM_000831 PE=4 SV=1	[more]
K7KPI7_SOYBN	1.2e-15	75.00	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of Csa2G279280 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65880.1	3.2e-15	67.74	unknown protein	[more]

BLAST of Csa2G279280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206872\|gb\|KGN61991.1\|	3.9e-23	100.00	hypothetical protein Csa_2G279280 [Cucumis sativus]	[more]
gi\|566181362\|ref\|XP_006380825.1\|	1.1e-17	87.04	hypothetical protein POPTR_0007s14760g [Populus trichocarpa]	[more]
gi\|296083544\|emb\|CBI23537.3\|	7.2e-17	83.02	unnamed protein product [Vitis vinifera]	[more]
gi\|702454674\|ref\|XP_010026538.1\|	1.4e-15	79.63	PREDICTED: uncharacterized protein LOC104416903 [Eucalyptus grandis]	[more]
gi\|590705967\|ref\|XP_007047590.1\|	1.4e-15	89.58	Uncharacterized protein TCM_000831 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU096336	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G279280.1	Csa2G279280.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU096336	CU096336	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36815	FAMILY NOT NAMED	coord: 1..54 score: 8.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G279280	Cla020247	Watermelon (97103) v1	cuwmB148
Csa2G279280	ClCG02G012200	Watermelon (Charleston Gray)	cuwcgB125
Csa2G279280	Lsi10G005180	Bottle gourd (USVL1VR-Ls)	culsiB096
Csa2G279280	Cla97C02G037870	Watermelon (97103) v2	cuwmbB121
Csa2G279280	Cucsa.367320	Cucumber (Gy14) v1	cgycuB512
Csa2G279280	CmaCh02G005260	Cucurbita maxima (Rimu)	cmacuB582
Csa2G279280	CmoCh02G005370	Cucurbita moschata (Rifu)	cmocuB571
Csa2G279280	Cp4.1LG05g11530	Cucurbita pepo (Zucchini)	cpecuB710
Csa2G279280	CsGy2G013750	Cucumber (Gy14) v2	cgybcuB062
Csa2G279280	Carg11606	Silver-seed gourd	carcuB1070

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G279280	Melon (DHL92) v3.6.1	cumedB082
Csa2G279280	Watermelon (97103) v2	cuwmbB115
Csa2G279280	Wax gourd	cuwgoB175
Csa2G279280	Wax gourd	cuwgoB182
Csa2G279280	Cucumber (Chinese Long) v2	cucuB071
Csa2G279280	Cucumber (Gy14) v1	cgycuB513
Csa2G279280	Cucurbita maxima (Rimu)	cmacuB540
Csa2G279280	Cucurbita maxima (Rimu)	cmacuB852
Csa2G279280	Cucurbita moschata (Rifu)	cmocuB529
Csa2G279280	Cucurbita moschata (Rifu)	cmocuB839
Csa2G279280	Melon (DHL92) v3.5.1	cumeB093
Csa2G279280	Watermelon (Charleston Gray)	cuwcgB119
Csa2G279280	Watermelon (97103) v1	cuwmB138
Csa2G279280	Watermelon (97103) v1	cuwmB140
Csa2G279280	Cucurbita pepo (Zucchini)	cpecuB272
Csa2G279280	Cucurbita pepo (Zucchini)	cpecuB479
Csa2G279280	Bottle gourd (USVL1VR-Ls)	culsiB093
Csa2G279280	Cucumber (Gy14) v2	cgybcuB056