Cucsa.367320 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.367320
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTransmembrane protein, putative
Locationscaffold03625 : 722325 .. 723134 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATGGGTGCGGTCATGTAAGTGTTCTTCGCAATTTTACATCCCTTCCTTTTACCCTTTATCAATTAATCAATCAATTTAGAGATTTGATCTATTGATTTTGACGTTCGAATTGCTATCTACCTATCATTGATTGATTGAATTTGAAATTTGATTCAATAATTTTGTTATCTTCCCTCTCAATTCTTGTTTCTCCATTTTGGATGGGTTCAGTTTGCTTCTCTGTCTATTGTAATAAGAATTTCGTTATTGAATATAACAATAATGTGTGCAAAAACTGAAGAATGTTGAAAGGTTTGAAGTTCTTGGGTTTAGTTAGGGAAGATTTCTAATTTACTTACAGTGTCTCAAGTTTTGTTAATGCAAGATGTTTATGAAGGCTGGAAAACAACGAAATTTTATATTTGTGAAGTTTTTACAGAAAGGGGTTCTGTTCATATTCGACTTTCTATAGGTTGTAGCATTAGTTGTTTATGAATTAATATTGTTTTCCATTTTGGTGATAAGCTCTGTGTTTCAACAATTCATTCTTGGAAGTTTTGCACAGTGTTTTTAAGCTCTTGATGAGTTTTGGGCCGAAAGTAAAACCATTGATTCAGAATGGAAAATTACTTGACAAGTTGATTAGACTGTAATATATTTGTTGCTTGCAGCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTACTAGTACTACCAGCTCAACTTAG

mRNA sequence

ATGTTGGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATGGGTGCGGTCATCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTACTAGTACTACCAGCTCAACTTAG

Coding sequence (CDS)

ATGTTGGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATGGGTGCGGTCATCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTACTAGTACTACCAGCTCAACTTAG

Protein sequence

MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST*
Homology
[Close]
BLAST of Cucsa.367320 vs. TrEMBL
Match: A0A0A0LPX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G279280 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.7e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST 58
          MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST
Sbjct: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST 57

[Close]
BLAST of Cucsa.367320 vs. TrEMBL
Match: U5GB04_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14760g PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.7e-18
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1 

Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTT 55
          M  RSRFLSFP+V+GAVIIGVVSGKAIFGPPLDEYWKKKL+EEAAAKET TS+T
Sbjct: 1  MFFRSRFLSFPLVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKETDTSST 54

[Close]
BLAST of Cucsa.367320 vs. TrEMBL
Match: D6CH05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0988g00020 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.0e-17
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 

Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTST 54
          M GR RFLSFP+V+GAV+IGVVSGKAIFGPPLDEYWKKKL+EEAAAKET  S+
Sbjct: 1  MFGRRRFLSFPLVIGAVVIGVVSGKAIFGPPLDEYWKKKLQEEAAAKETDASS 53

[Close]
BLAST of Cucsa.367320 vs. TrEMBL
Match: A0A061DHT2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000831 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.4e-16
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1 

Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKE 49
          M  RSRFLSFPMV+GAVIIGVVSGKAIFGPPLDEYW+KKL+EEAAAKE
Sbjct: 1  MFRRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLQEEAAAKE 48

[Close]
BLAST of Cucsa.367320 vs. TrEMBL
Match: K7KPI7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-15
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEE---AAAKETGTSTTSST 58
          M GR RFLSFPMV+GAVIIGVVSGKAIFGPPLDEYWKKK +EE   AAAKE  +++TS++
Sbjct: 33 MFGRRRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKQQEEVAAAAAKENDSTSTSTS 92

[Close]
BLAST of Cucsa.367320 vs. TAIR10
Match: AT5G65880.1 (AT5G65880.1 unknown protein)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-15
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1 

Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAA--AKE---TGTSTTS 58
          M  R+RFLS PMV+GAV+IGVVSGKAIFGPPLD+YWK+KLE E A  AKE     +S +S
Sbjct: 1  MFRRNRFLSLPMVIGAVVIGVVSGKAIFGPPLDQYWKEKLEREEAVVAKEEVIEKSSDSS 60

[Close]
BLAST of Cucsa.367320 vs. NCBI nr
Match: gi|700206872|gb|KGN61991.1| (hypothetical protein Csa_2G279280 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST 58
          MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST
Sbjct: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTSST 57

[Close]
BLAST of Cucsa.367320 vs. NCBI nr
Match: gi|566181362|ref|XP_006380825.1| (hypothetical protein POPTR_0007s14760g [Populus trichocarpa])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1 

Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTT 55
          M  RSRFLSFP+V+GAVIIGVVSGKAIFGPPLDEYWKKKL+EEAAAKET TS+T
Sbjct: 1  MFFRSRFLSFPLVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKETDTSST 54

[Close]
BLAST of Cucsa.367320 vs. NCBI nr
Match: gi|296083544|emb|CBI23537.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-17
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 

Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTST 54
          M GR RFLSFP+V+GAV+IGVVSGKAIFGPPLDEYWKKKL+EEAAAKET  S+
Sbjct: 1  MFGRRRFLSFPLVIGAVVIGVVSGKAIFGPPLDEYWKKKLQEEAAAKETDASS 53

[Close]
BLAST of Cucsa.367320 vs. NCBI nr
Match: gi|702454674|ref|XP_010026538.1| (PREDICTED: uncharacterized protein LOC104416903 [Eucalyptus grandis])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 1   MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTT 55
           M GRSRFLSFP V+GAV+IGVVSGKAIFGPPLDEYWKKK EEEAA K T +S++
Sbjct: 60  MFGRSRFLSFPTVIGAVVIGVVSGKAIFGPPLDEYWKKKHEEEAAVKGTDSSSS 113

[Close]
BLAST of Cucsa.367320 vs. NCBI nr
Match: gi|590705967|ref|XP_007047590.1| (Uncharacterized protein TCM_000831 [Theobroma cacao])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 1 

Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKE 49
          M  RSRFLSFPMV+GAVIIGVVSGKAIFGPPLDEYW+KKL+EEAAAKE
Sbjct: 1  MFRRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLQEEAAAKE 48

The following BLAST results are available for this feature:
BLAST of Cucsa.367320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPX1_CUCSA2.7e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G279280 PE=4 SV=1[more]
U5GB04_POPTR7.7e-1887.04Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14760g PE=4 SV=1[more]
D6CH05_VITVI5.0e-1783.02Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0988g00020 PE=4 SV=... [more]
A0A061DHT2_THECC9.4e-1689.58Uncharacterized protein OS=Theobroma cacao GN=TCM_000831 PE=4 SV=1[more]
K7KPI7_SOYBN1.2e-1575.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
BLAST of Cucsa.367320 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G65880.13.2e-1567.74 unknown protein[more]
BLAST of Cucsa.367320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206872|gb|KGN61991.1|3.9e-23100.00hypothetical protein Csa_2G279280 [Cucumis sativus][more]
gi|566181362|ref|XP_006380825.1|1.1e-1787.04hypothetical protein POPTR_0007s14760g [Populus trichocarpa][more]
gi|296083544|emb|CBI23537.3|7.2e-1783.02unnamed protein product [Vitis vinifera][more]
gi|702454674|ref|XP_010026538.1|1.4e-1579.63PREDICTED: uncharacterized protein LOC104416903 [Eucalyptus grandis][more]
gi|590705967|ref|XP_007047590.1|1.4e-1589.58Uncharacterized protein TCM_000831 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.367320.1Cucsa.367320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36815FAMILY NOT NAMEDcoord: 1..54
score: 8.5
NoneNo IPR availablePANTHERPTHR36815:SF1SUBFAMILY NOT NAMEDcoord: 1..54
score: 8.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.367320Cla020247Watermelon (97103) v1cgywmB667
Cucsa.367320Csa2G279280Cucumber (Chinese Long) v2cgycuB512
Cucsa.367320ClCG02G012200Watermelon (Charleston Gray)cgywcgB629
Cucsa.367320CmaCh02G005260Cucurbita maxima (Rimu)cgycmaB1018
Cucsa.367320CmoCh02G005370Cucurbita moschata (Rifu)cgycmoB1017
Cucsa.367320Lsi10G005180Bottle gourd (USVL1VR-Ls)cgylsiB594
Cucsa.367320Cp4.1LG05g11530Cucurbita pepo (Zucchini)cgycpeB0975
Cucsa.367320CsaV3_2G016360Cucumber (Chinese Long) v3cgycucB557
Cucsa.367320Cla97C02G037870Watermelon (97103) v2cgywmbB635
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None