ClCG02G012200 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G012200
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 25494543 .. 25496728 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTCCCAAAACTTAAACATCCATTTAGATTTAGAAGGGAAGAACCCCCCGTGCGAAGAACGAGTAAAACGCGACCCGCAACCCTTGAGAAGCAACGCGAGATCAAGCTAAAGGGATTTCCAATCACTAGGTTTTGAATTCAGAATGTTCGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATTGGTGCTGTCATGTAAGTTTCTTCCCAATTTACATACCTTCCTTTACCCCTAATGAAGTAATCAATCAATTACACACTGTTATCTGCAGGTTTTTTGATGTTCGAATCGTTAATCTATCATTGATTAAATATGAAATTTGATTCATAACTTTGTTTACTTTCCATTTCTTTCCTTGAATCAAGAGGGATGATTATTACGATCAGTAGGTGAGATGTCTTTTTGGTTTAAGGTAATCAAATTAATTGATGCTTGAGAGAAACCGAAGTGGTAGGACAGTCTTTCAGCATTGCTTATTCAATAATTTTGTTTCTTTCCTGTCAAATCTTGTTTTTCCATGATGCATTTTGGATTTGAGGTTTCAGATTGCTTCTCTGTCTGTTTAAGAATGCTTATAACAATCTCCTCTTTGAATCTAATATTGTGTGCAAAAACTGAAGGATACTGAATGGTTTGAAGTTCTTGGTTTAGTTAGGGAAGATTTCTAAACTCCTTTAGCCATTATTAGTTACTGGAACACGTATGGTTTATTGTTTCCTCCGCTAATTTAAGTACAATGCCTCAGGAACCAAAGTTTTGTTAATGCTAGCTGTTTATGAGGGCTGGGAAACAAGGAAATCTTTTATTTGCAAACTTTTTACAGAAAAAGTTTCTGTTCACAATCGACTTTCTATAGGTTGTAGCATTAGTTTATGAATTCATATTGTTTTCCATTTTGATGATAAGCCCTGTGTTCCATTTAAGTAGAACCGAAGTTGGATTCATTCTTGGACGTTTGGCATAATATTTTTAAGCTCTCAATGAGTATTGGGCTAGAAGTAAAACATTGTTTCTGAATGGTAAATTACTTGAGCAGTTGATTAGGGTGTAATATATATGTTGCAGCATTGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTAGACGAAGAGGCAACCGCGAAGGAGACAGGCACTACCAGCTCAAGTTAGCATTGGTGAGGATAGTCATGCTTAGCAACATGGATATGTAGAGCTAGGAGAAATATTTTTTATGAAATAATCATTGAATATGTATAATCTTACATAGATATTTAAGGATTGGACCAAAACATTTGCAAAGGTTACCTTCTTTTACTTGTGACACCACGCCGATTATAAATGGTTCAATAGGAACCAACAAGGCCTTCTCTTTTGACGTAACCTTAGTGATTCAGGCATGGTCAAAATCACTTTCGTCATTGCCAAAATTACTTTGCTTTTCAATGATGACATTTGACAAAGGGACAAAACCATTTTAGAAAAATCTAAAATCATTTATAATTGATTTTCTTTTTTTAACCAACATGGGTTGGCCTAGTGGTAAAAAGGAGACATAGTCTCAATAAATGATTAAGAGGTTGGTTCAATCCATAGTGGCCACCTACCTAGGAATTAATTTTTCTATGAGTTGCTTTCAGTACCTCACGAATATCAGGCCTATATAATTTCTTACTCTCGATTGGAAGTTCCTCTTGCTACTGGAGGCTCATCTTCCTCACCCTTGCAGCATCTTCAAACGAATCTTTTTGCTCCGATCTCTCTCTCTCTCTTGTTTTCGTGATTGCTTCCCTCATTTTGCAGGTTGTTATCTTCATCCGTGTTTGAGTTTTGGACTTGTGGTTTCTTATTGATTTTGTTGTTTGTTTGTGTAATTTCGTTTCAATTTGTGGAAATAGTTTTGATGAAATTGAATGTTGAGTGTATACGTTGTGAAAGCTTCGGCTCATCGGTTGTGTATTGGTTGAAAAATCTTGCTTGCATGTTTGTGGTGAATCTTGTTTCGATTACTCTACTTGACGAATCTTGATTTCAATTTGGTTTATGGCACTCAAAGCTACTTTAACTTGTTGCTTTTTATTGGCATATTATTAGTTGGAAGTTTGAGTGCAAGATGGGTCCTTTCGCTCAGTTATTGGATATTGTCTTCAAGAGCTCTCTCTCTCTCTCTCTCT

mRNA sequence

ATTTTTCCCAAAACTTAAACATCCATTTAGATTTAGAAGGGAAGAACCCCCCGTGCGAAGAACGAGTAAAACGCGACCCGCAACCCTTGAGAAGCAACGCGAGATCAAGCTAAAGGGATTTCCAATCACTAGGTTTTGAATTCAGAATGTTCGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATTGGTGCTGTCATCATTGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTAGACGAAGAGGCAACCGCGAAGGAGACAGGCACTACCAGCTCAAGTTAGCATTGTTGGAAGTTTGAGTGCAAGATGGGTCCTTTCGCTCAGTTATTGGATATTGTCTTCAAGAGCTCTCTCTCTCTCTCTCTCT

Coding sequence (CDS)

ATGTTCGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATTGGTGCTGTCATCATTGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTAGACGAAGAGGCAACCGCGAAGGAGACAGGCACTACCAGCTCAAGTTAG

Protein sequence

MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEATAKETGTTSSS

Homology

[Close]

BLAST of ClCG02G012200 vs. TrEMBL
Match: A0A0A0LPX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G279280 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.0e-19
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 1  MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEATAKETGTTSSS 56
          M GRSRFLSFPMV+GAVIIGVVSGKAIFGPPLDEYWKKKL+EEA AKETGT+++S
Sbjct: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTS 55

[Close]

BLAST of ClCG02G012200 vs. TrEMBL
Match: U5GB04_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14760g PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-18
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 1  MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEATAKETGTTSS 55
          MF RSRFLSFP+VIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEA AKET T+S+
Sbjct: 1  MFFRSRFLSFPLVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKETDTSST 54

[Close]

BLAST of ClCG02G012200 vs. TrEMBL
Match: D6CH05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0988g00020 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-17
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1


Query: 1  MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEATAKETGTTS 54
          MFGR RFLSFP+VIGAV+IGVVSGKAIFGPPLDEYWKKKL EEA AKET  +S
Sbjct: 1  MFGRRRFLSFPLVIGAVVIGVVSGKAIFGPPLDEYWKKKLQEEAAAKETDASS 53

[Close]

BLAST of ClCG02G012200 vs. TrEMBL
Match: A0A061DHT2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000831 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-16
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 1  MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEATAKE 49
          MF RSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYW+KKL EEA AKE
Sbjct: 1  MFRRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWRKKLQEEAAAKE 48

[Close]

BLAST of ClCG02G012200 vs. TrEMBL
Match: A0A0B2QGL1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_027852 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-16
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1


Query: 1  MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEE---ATAKETGTTSSS 56
          MFGR RFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKK  EE   A AKE  +TS+S
Sbjct: 1  MFGRRRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKQQEEVAAAAAKENDSTSTS 58

[Close]

BLAST of ClCG02G012200 vs. TAIR10
Match: AT5G65880.1 (AT5G65880.1 unknown protein)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-15
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 1  MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEE--ATAKETGTTSSS 56
          MF R+RFLS PMVIGAV+IGVVSGKAIFGPPLD+YWK+KL+ E    AKE     SS
Sbjct: 1  MFRRNRFLSLPMVIGAVVIGVVSGKAIFGPPLDQYWKEKLEREEAVVAKEEVIEKSS 57

[Close]

BLAST of ClCG02G012200 vs. NCBI nr
Match: gi|700206872|gb|KGN61991.1| (hypothetical protein Csa_2G279280 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-19
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 1  MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEATAKETGTTSSS 56
          M GRSRFLSFPMV+GAVIIGVVSGKAIFGPPLDEYWKKKL+EEA AKETGT+++S
Sbjct: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGTSTTS 55

[Close]

BLAST of ClCG02G012200 vs. NCBI nr
Match: gi|566181362|ref|XP_006380825.1| (hypothetical protein POPTR_0007s14760g [Populus trichocarpa])

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-18
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 1  MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEATAKETGTTSS 55
          MF RSRFLSFP+VIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEA AKET T+S+
Sbjct: 1  MFFRSRFLSFPLVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKETDTSST 54

[Close]

BLAST of ClCG02G012200 vs. NCBI nr
Match: gi|296083544|emb|CBI23537.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-17
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1


Query: 1  MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEATAKETGTTS 54
          MFGR RFLSFP+VIGAV+IGVVSGKAIFGPPLDEYWKKKL EEA AKET  +S
Sbjct: 1  MFGRRRFLSFPLVIGAVVIGVVSGKAIFGPPLDEYWKKKLQEEAAAKETDASS 53

[Close]

BLAST of ClCG02G012200 vs. NCBI nr
Match: gi|702454674|ref|XP_010026538.1| (PREDICTED: uncharacterized protein LOC104416903 [Eucalyptus grandis])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-16
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 1   MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEATAKETGTTSS 55
           MFGRSRFLSFP VIGAV+IGVVSGKAIFGPPLDEYWKKK +EEA  K T ++SS
Sbjct: 60  MFGRSRFLSFPTVIGAVVIGVVSGKAIFGPPLDEYWKKKHEEEAAVKGTDSSSS 113

[Close]

BLAST of ClCG02G012200 vs. NCBI nr
Match: gi|947109823|gb|KRH58149.1| (hypothetical protein GLYMA_05G107700 [Glycine max])

HSP 1 Score: 91.3 bits (225), Expect = 5.8e-16
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1


Query: 1  MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEE---ATAKETGTTSSS 56
          MFGR RFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKK  EE   A AKE  +TS+S
Sbjct: 1  MFGRRRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKQQEEVAAAAAKENDSTSTS 58

The following BLAST results are available for this feature:

BLAST of ClCG02G012200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPX1_CUCSA	3.0e-19	87.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G279280 PE=4 SV=1	[more]
U5GB04_POPTR	1.9e-18	88.89	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14760g PE=4 SV=1	[more]
D6CH05_VITVI	2.1e-17	84.91	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0988g00020 PE=4 SV=...	[more]
A0A061DHT2_THECC	4.0e-16	91.67	Uncharacterized protein OS=Theobroma cacao GN=TCM_000831 PE=4 SV=1	[more]
A0A0B2QGL1_GLYSO	4.0e-16	81.03	Uncharacterized protein OS=Glycine soja GN=glysoja_027852 PE=4 SV=1	[more]

BLAST of ClCG02G012200 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65880.1	1.0e-15	70.18	unknown protein	[more]

BLAST of ClCG02G012200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206872\|gb\|KGN61991.1\|	4.3e-19	87.27	hypothetical protein Csa_2G279280 [Cucumis sativus]	[more]
gi\|566181362\|ref\|XP_006380825.1\|	2.8e-18	88.89	hypothetical protein POPTR_0007s14760g [Populus trichocarpa]	[more]
gi\|296083544\|emb\|CBI23537.3\|	3.1e-17	84.91	unnamed protein product [Vitis vinifera]	[more]
gi\|702454674\|ref\|XP_010026538.1\|	3.4e-16	81.48	PREDICTED: uncharacterized protein LOC104416903 [Eucalyptus grandis]	[more]
gi\|947109823\|gb\|KRH58149.1\|	5.8e-16	81.03	hypothetical protein GLYMA_05G107700 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G012200.1	ClCG02G012200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36815	FAMILY NOT NAMED	coord: 1..54 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G012200	Csa2G279280	Cucumber (Chinese Long) v2	cuwcgB125
ClCG02G012200	Cla020247	Watermelon (97103) v1	wcgwmB197
ClCG02G012200	Cla97C02G037870	Watermelon (97103) v2	wcgwmbB138
ClCG02G012200	Cucsa.367320	Cucumber (Gy14) v1	cgywcgB629
ClCG02G012200	CmaCh02G005260	Cucurbita maxima (Rimu)	cmawcgB545
ClCG02G012200	CmoCh02G005370	Cucurbita moschata (Rifu)	cmowcgB542
ClCG02G012200	Cp4.1LG05g11530	Cucurbita pepo (Zucchini)	cpewcgB648
ClCG02G012200	CsGy2G013750	Cucumber (Gy14) v2	cgybwcgB115
ClCG02G012200	CsaV3_2G016360	Cucumber (Chinese Long) v3	cucwcgB134

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G012200	Cucurbita pepo (Zucchini)	cpewcgB262
ClCG02G012200	Bottle gourd (USVL1VR-Ls)	lsiwcgB045
ClCG02G012200	Melon (DHL92) v3.6.1	medwcgB102
ClCG02G012200	Silver-seed gourd	carwcgB0780
ClCG02G012200	Wax gourd	wcgwgoB302
ClCG02G012200	Cucurbita maxima (Rimu)	cmawcgB496
ClCG02G012200	Cucurbita moschata (Rifu)	cmowcgB578
ClCG02G012200	Cucurbita moschata (Rifu)	cmowcgB497
ClCG02G012200	Wild cucumber (PI 183967)	cpiwcgB125
ClCG02G012200	Cucumber (Chinese Long) v2	cuwcgB119
ClCG02G012200	Melon (DHL92) v3.5.1	mewcgB106