CsGy2G013750 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G013750
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transmembrane protein
Location	Chr2 : 14054404 .. 14056021 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAGATGTGTGATATGGTTTCAAAATTTGTAATCAGTGTTGTATTATAATTAAGATGAAAAATATTCAATCCGATTTTAGTTAAAAATTACAAAAAATCGATGGTAATAATGGTAAAATGTGTAGGTTTATAGTTGAATCCAATCTTTGTAATTCATCTCATTTCTATGATACTAGTTTTCATTACGGTTGAGTAACGTGACCTAATAAATCATGGGCATAAGTCCAATCATCATAGATCCATATGTGTTATCGGCAGAACCCTCCTTTGTGACGGACCCTCAATCCTTAAGAAGCAGCGAGCGATCAAGCTAAAGAGATTTCCAATTACTAGCTTTTGTTATTCAGAATGTTGGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATGGGTGCGGTCATGTAAGTGTTCTTCGCAATTTTACATCCCTTCCTTTTACCCTTTATCAATTAATCAATCAATTTAGAGATTTGATCTATTGATTTTGACGTTCGAATTGCTATCTACCTATCATTGATTGATTGAATTTGAAATTTGATTCAATAATTTTGTTATCTTCCCTCTCAATTCTTGTTTCTCCATTTTGGATGGGTTCAGTTTGCTTCTCTGTCTATTGTAATAAGAATTTCGTTATTGAATATAACAATAATGTGTGCAAAAACTGAAGAATGTTGAAAGGTTTGAAGTTCTTGGGTTTAGTTAGGGAAGATTTCTAATTTACTTACAGTGTCTCAAGTTTTGTTAATGCAAGATGTTTATGAAGGCTGGAAAACAACGAAATTTTATATTTGTGAAGTTTTTACAGAAAGGGGTTCTGTTCATATTCGACTTTCTATAGGTTGTAGCATTAGTTGTTTATGAATTAATATTGTTTTCCATTTTGGTGATAAGCTCTGTGTTTCAACAATTCATTCTTGGAAGTTTTGCACAGTGTTTTTAAGCTCTTGATGAGTTTTGGGCCGAAAGTAAAACCATTGATTCAGAATGGAAAATTACTTGACAAGTTGATTAGACTGTAATATATTTGTTGCTTGCAGCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTACTAGTACTACCAGCTCAACTTAGCATAGGTCAGGATTCGGGATAGTCATGCTTAGCAACATGGATATGTAGAGCTAGGAGAAATATGTTTTCGATGAAACAATCATTGAATATGTATAATCTTGCATGGATATTTATGCATAAAACACCCAAGAATTTGCAAAGGTTATCTTCTTTTACTTGGGACACCATGTGGATTATCTACAAAAAAGAATGGTCCAATAGGAACCAACAAGGCCTTCCCTTTTGGCTAAACCACTAAAAGGTATGTTCGGTTGTAATTTTGACAATGTTAAACTTAAATTCACTTTTTTCACTGCCAAAGTCATTTCAAACAGCTCTTTTCACCGTGATCTCTATCTCTTGTTCTCGTGATCGCTTTCCTCATTTTCAGGTAGTGGTTTCTTAATGATTTTGTTGTTTATTTGTGTTCTTTTGTCTCAATTTGTGGAAGTAGTTCTGGGGAACTTCAGATGGAGTTGA

mRNA sequence

ATCAGATGTGTGATATGGTTTCAAAATTTGTAATCAGTGTTGTATTATAATTAAGATGAAAAATATTCAATCCGATTTTAGTTAAAAATTACAAAAAATCGATGGTAATAATGGTAAAATGTGTAGGTTTATAGTTGAATCCAATCTTTGTAATTCATCTCATTTCTATGATACTAGTTTTCATTACGGTTGAGTAACGTGACCTAATAAATCATGGGCATAAGTCCAATCATCATAGATCCATATGTGTTATCGGCAGAACCCTCCTTTGTGACGGACCCTCAATCCTTAAGAAGCAGCGAGCGATCAAGCTAAAGAGATTTCCAATTACTAGCTTTTGTTATTCAGAATGTTGGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATGGGTGCGGTCATCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTAGTGGTTTCTTAATGATTTTGTTGTTTATTTGTGTTCTTTTGTCTCAATTTGTGGAAGTAGTTCTGGGGAACTTCAGATGGAGTTGA

Coding sequence (CDS)

ATGTTGGGTCGAAGCAGGTTCCTCTCGTTTCCCATGGTAATGGGTGCGGTCATCATCGGTGTTGTTTCTGGGAAAGCAATATTTGGGCCACCTCTTGATGAATACTGGAAAAAGAAGCTGGAAGAAGAGGCGGCCGCAAAGGAGACAGGTAGTGGTTTCTTAATGATTTTGTTGTTTATTTGTGTTCTTTTGTCTCAATTTGTGGAAGTAGTTCTGGGGAACTTCAGATGGAGTTGA

Protein sequence

MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGSGFLMILLFICVLLSQFVEVVLGNFRWS

Homology

[Close]

BLAST of CsGy2G013750 vs. NCBI nr
Match: KGN61991.1 (hypothetical protein Csa_2G279280 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGS 52
          MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETG+
Sbjct: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGT 51

[Close]

BLAST of CsGy2G013750 vs. NCBI nr
Match: XP_022149438.1 (uncharacterized protein LOC111017867 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGS 52
          M GRSRFLSFPMV+GAVIIGVVSGKAIFGPPLDEYWKKKLEEEA AK+TG+
Sbjct: 1  MFGRSRFLSFPMVIGAVIIGVVSGKAIFGPPLDEYWKKKLEEEATAKKTGT 51

[Close]

BLAST of CsGy2G013750 vs. NCBI nr
Match: CBI23537.3 (unnamed protein product, partial [Vitis vinifera] >CBI38496.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 93.2 bits (230), Expect = 4.2e-16
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKET 50
          M GR RFLSFP+V+GAV+IGVVSGKAIFGPPLDEYWKKKL+EEAAAKET
Sbjct: 1  MFGRRRFLSFPLVIGAVVIGVVSGKAIFGPPLDEYWKKKLQEEAAAKET 49

[Close]

BLAST of CsGy2G013750 vs. NCBI nr
Match: PNT26302.1 (hypothetical protein POPTR_007G006700v3 [Populus trichocarpa])

HSP 1 Score: 92.0 bits (227), Expect = 9.3e-16
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKET 50
          M  RSRFLSFP+V+GAVIIGVVSGKAIFGPPLDEYWKKKL+EEAAAKET
Sbjct: 1  MFFRSRFLSFPLVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKET 49

[Close]

BLAST of CsGy2G013750 vs. NCBI nr
Match: PKI71335.1 (hypothetical protein CRG98_008335 [Punica granatum])

HSP 1 Score: 92.0 bits (227), Expect = 9.3e-16
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGS 52
          M GR +FLSFPMV+GAV+IGVVSGKAIFGPPLDEYWKKKL+EEA AKET +
Sbjct: 1  MFGRRKFLSFPMVIGAVVIGVVSGKAIFGPPLDEYWKKKLQEEAPAKETNA 51

[Close]

BLAST of CsGy2G013750 vs. TAIR10
Match: AT5G65880.1 (unknown protein)

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-15
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAA--AKE 49
          M  R+RFLS PMV+GAV+IGVVSGKAIFGPPLD+YWK+KLE E A  AKE
Sbjct: 1  MFRRNRFLSLPMVIGAVVIGVVSGKAIFGPPLDQYWKEKLEREEAVVAKE 50

[Close]

BLAST of CsGy2G013750 vs. TrEMBL
Match: tr|A0A0A0LPX1|A0A0A0LPX1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279280 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGS 52
          MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETG+
Sbjct: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGT 51

[Close]

BLAST of CsGy2G013750 vs. TrEMBL
Match: tr|D6CH05|D6CH05_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0988g00020 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-16
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKET 50
          M GR RFLSFP+V+GAV+IGVVSGKAIFGPPLDEYWKKKL+EEAAAKET
Sbjct: 1  MFGRRRFLSFPLVIGAVVIGVVSGKAIFGPPLDEYWKKKLQEEAAAKET 49

[Close]

BLAST of CsGy2G013750 vs. TrEMBL
Match: tr|U5GB04|U5GB04_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G006700v3 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.2e-16
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKET 50
          M  RSRFLSFP+V+GAVIIGVVSGKAIFGPPLDEYWKKKL+EEAAAKET
Sbjct: 1  MFFRSRFLSFPLVIGAVIIGVVSGKAIFGPPLDEYWKKKLDEEAAAKET 49

[Close]

BLAST of CsGy2G013750 vs. TrEMBL
Match: tr|A0A2I0KS84|A0A2I0KS84_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_008335 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.2e-16
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETGS 52
          M GR +FLSFPMV+GAV+IGVVSGKAIFGPPLDEYWKKKL+EEA AKET +
Sbjct: 1  MFGRRKFLSFPMVIGAVVIGVVSGKAIFGPPLDEYWKKKLQEEAPAKETNA 51

[Close]

BLAST of CsGy2G013750 vs. TrEMBL
Match: tr|A0A2P5AUW1|A0A2P5AUW1_PARAD (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298160 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.1e-16
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MLGRSRFLSFPMVMGAVIIGVVSGKAIFGPPLDEYWKKKLEEEAAAKETG 51
          M GR+RFLSFP V+GAV+IGVVSGKAIFGPPL+EYW+KKLEEEAAAKE G
Sbjct: 1  MFGRNRFLSFPTVIGAVLIGVVSGKAIFGPPLEEYWRKKLEEEAAAKENG 50

The following BLAST results are available for this feature:

BLAST of CsGy2G013750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61991.1	2.4e-19	98.04	hypothetical protein Csa_2G279280 [Cucumis sativus]	[more]
XP_022149438.1	1.7e-17	90.20	uncharacterized protein LOC111017867 [Momordica charantia]	[more]
CBI23537.3	4.2e-16	87.76	unnamed protein product, partial [Vitis vinifera] >CBI38496.3 unnamed protein pr...	[more]
PNT26302.1	9.3e-16	89.80	hypothetical protein POPTR_007G006700v3 [Populus trichocarpa]	[more]
PKI71335.1	9.3e-16	82.35	hypothetical protein CRG98_008335 [Punica granatum]	[more]

BLAST of CsGy2G013750 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65880.1	4.3e-15	76.00	unknown protein	[more]

BLAST of CsGy2G013750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G013750 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPX1\|A0A0A0LPX1_CUCSA	1.6e-19	98.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279280 PE=4 SV=1	[more]
tr\|D6CH05\|D6CH05_VITVI	2.8e-16	87.76	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0988g00020 PE=4 SV=...	[more]
tr\|U5GB04\|U5GB04_POPTR	6.2e-16	89.80	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G006700v3 PE=...	[more]
tr\|A0A2I0KS84\|A0A2I0KS84_PUNGR	6.2e-16	82.35	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_008335 PE=4 SV=1	[more]
tr\|A0A2P5AUW1\|A0A2P5AUW1_PARAD	8.1e-16	84.00	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298160 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G013750.1	CsGy2G013750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36815	FAMILY NOT NAMED	coord: 1..51

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G013750	Cla020247	Watermelon (97103) v1	cgybwmB133
CsGy2G013750	Csa2G279280	Cucumber (Chinese Long) v2	cgybcuB062
CsGy2G013750	ClCG02G012200	Watermelon (Charleston Gray)	cgybwcgB115
CsGy2G013750	CmoCh02G005370	Cucurbita moschata (Rifu)	cgybcmoB223
CsGy2G013750	Cp4.1LG05g11530	Cucurbita pepo (Zucchini)	cgybcpeB244
CsGy2G013750	CsaV3_2G016360	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G013750	Cla97C02G037870	Watermelon (97103) v2	cgybwmbB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G013750	Cucumber (Gy14) v2	cgybcgybB070
CsGy2G013750	Cucurbita maxima (Rimu)	cgybcmaB221
CsGy2G013750	Cucurbita maxima (Rimu)	cgybcmaB233
CsGy2G013750	Cucurbita moschata (Rifu)	cgybcmoB213
CsGy2G013750	Cucurbita pepo (Zucchini)	cgybcpeB197
CsGy2G013750	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G013750	Bottle gourd (USVL1VR-Ls)	cgyblsiB086
CsGy2G013750	Melon (DHL92) v3.5.1	cgybmeB084
CsGy2G013750	Melon (DHL92) v3.6.1	cgybmedB079
CsGy2G013750	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G013750	Silver-seed gourd	carcgybB0792
CsGy2G013750	Wax gourd	cgybwgoB175