Csa2G075390 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G075390
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 6171029 .. 6171340 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTGAAGTGGGTATTGCTTTGTTCATCAAGTGAATGGGAGTTTCTTGCTTGGGATTTCGTTCTTTGGGGCTTTCAAGCTCTGTGTTTACTTTATTAATAAATGGGTTTTCATTCTGTTTATTGTTTCTTCTGCAGATTTGGGGTTTCTGATTGCTTCATTGTGTGGCAGAAGGCAGCAGAGTTTGAGATCAGGCTGTTTGTGTGGTGTCTGTCAGTTCAGTTAGCTGCTGAAAATGGTCGAGATTTGAGGACGACGAAGTTATGTGAGTTATCTGATTTGAGGCTCTTTCGGTTGTCTAGCTACTGA

mRNA sequence

ATGGAATTGAAGTGGGTATTGCTTTGTTCATCAAGTGAATGGGAGTTTCTTGCTTGGGATTTCGTTCTTTGGGGCTTTCAAGCTCTATTTGGGGTTTCTGATTGCTTCATTGTGTGGCAGAAGGCAGCAGAGTTTGAGATCAGGCTGTTTGTGTGGTGTCTGTCAGTTCAGTTAGCTGCTGAAAATGGTCGAGATTTGAGGACGACGAAGTTATGTGAGTTATCTGATTTGAGGCTCTTTCGGTTGTCTAGCTACTGA

Coding sequence (CDS)

ATGGAATTGAAGTGGGTATTGCTTTGTTCATCAAGTGAATGGGAGTTTCTTGCTTGGGATTTCGTTCTTTGGGGCTTTCAAGCTCTATTTGGGGTTTCTGATTGCTTCATTGTGTGGCAGAAGGCAGCAGAGTTTGAGATCAGGCTGTTTGTGTGGTGTCTGTCAGTTCAGTTAGCTGCTGAAAATGGTCGAGATTTGAGGACGACGAAGTTATGTGAGTTATCTGATTTGAGGCTCTTTCGGTTGTCTAGCTACTGA

Protein sequence

MELKWVLLCSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAAENGRDLRTTKLCELSDLRLFRLSSY*
Homology
[Close]
BLAST of Csa2G075390 vs. TrEMBL
Match: A0A0A0LH52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075390 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.0e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MELKWVLLCSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA 60
          MELKWVLLCSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA
Sbjct: 1  MELKWVLLCSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA 60

Query: 61 ENGRDLRTTKLCELSDLRLFRLSSY 86
          ENGRDLRTTKLCELSDLRLFRLSSY
Sbjct: 61 ENGRDLRTTKLCELSDLRLFRLSSY 85

[Close]
BLAST of Csa2G075390 vs. NCBI nr
Match: gi|700206161|gb|KGN61280.1| (hypothetical protein Csa_2G075390 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 8.7e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MELKWVLLCSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA 60
          MELKWVLLCSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA
Sbjct: 1  MELKWVLLCSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA 60

Query: 61 ENGRDLRTTKLCELSDLRLFRLSSY 86
          ENGRDLRTTKLCELSDLRLFRLSSY
Sbjct: 61 ENGRDLRTTKLCELSDLRLFRLSSY 85

The following BLAST results are available for this feature:
BLAST of Csa2G075390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH52_CUCSA6.0e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075390 PE=4 SV=1[more]
BLAST of Csa2G075390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206161|gb|KGN61280.1|8.7e-43100.00hypothetical protein Csa_2G075390 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103680cucumber EST collection version 3.0transcribed_cluster
CU173805cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G075390.1Csa2G075390.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103680CU103680transcribed_cluster
CU173805CU173805transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G075390CSPI02G07380Wild cucumber (PI 183967)cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G075390Cucumber (Gy14) v1cgycuB274
Csa2G075390Cucurbita maxima (Rimu)cmacuB165
Csa2G075390Cucurbita maxima (Rimu)cmacuB786
Csa2G075390Cucurbita moschata (Rifu)cmocuB150
Csa2G075390Cucurbita moschata (Rifu)cmocuB779
Csa2G075390Melon (DHL92) v3.5.1cumeB133
Csa2G075390Watermelon (Charleston Gray)cuwcgB103
Csa2G075390Watermelon (97103) v1cuwmB156
Csa2G075390Cucurbita pepo (Zucchini)cpecuB098
Csa2G075390Cucurbita pepo (Zucchini)cpecuB811
Csa2G075390Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G075390Cucumber (Gy14) v2cgybcuB056
Csa2G075390Melon (DHL92) v3.6.1cumedB132
Csa2G075390Silver-seed gourdcarcuB0184
Csa2G075390Silver-seed gourdcarcuB0736
Csa2G075390Watermelon (97103) v2cuwmbB109
Csa2G075390Wax gourdcuwgoB139