CSPI02G07380 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G07380
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 6313334 .. 6313645 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTGAAGTGGGTATTGTTTTGTTCATCAAGTGAATGGGAGTTTCTTGCTTGGGATTTCGTTCTTTGGGGCTTTCAAGCTCTGTGTTTACTTTATTTATAAATGGGTTTTCATTCTGTTTATTGTTTCTTCTGCAGATTTGGGGTTTCTGATTGCTTCATTGTGTGGCAGAAGGCAGCAGAGTTTGAGATCAGGCTGTTTGTGTGGTGTCTGTCAGTTCAGTTAGCTGCTGAAAATGGTCGAGATTTGAGGACGACGAAGTTATGTGAGTTATCTGATTTGAGGCTCTTTCGGTTGTCTAGCTACTGA

mRNA sequence

ATGGAATTGAAGTGGGTATTGTTTTGTTCATCAAGTGAATGGGAGTTTCTTGCTTGGGATTTCGTTCTTTGGGGCTTTCAAGCTCTATTTGGGGTTTCTGATTGCTTCATTGTGTGGCAGAAGGCAGCAGAGTTTGAGATCAGGCTGTTTGTGTGGTGTCTGTCAGTTCAGTTAGCTGCTGAAAATGGTCGAGATTTGAGGACGACGAAGTTATGTGAGTTATCTGATTTGAGGCTCTTTCGGTTGTCTAGCTACTGA

Coding sequence (CDS)

ATGGAATTGAAGTGGGTATTGTTTTGTTCATCAAGTGAATGGGAGTTTCTTGCTTGGGATTTCGTTCTTTGGGGCTTTCAAGCTCTATTTGGGGTTTCTGATTGCTTCATTGTGTGGCAGAAGGCAGCAGAGTTTGAGATCAGGCTGTTTGTGTGGTGTCTGTCAGTTCAGTTAGCTGCTGAAAATGGTCGAGATTTGAGGACGACGAAGTTATGTGAGTTATCTGATTTGAGGCTCTTTCGGTTGTCTAGCTACTGA

Homology

[Close]

BLAST of CSPI02G07380 vs. TrEMBL
Match: A0A0A0LH52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075390 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.0e-42
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1


Query: 1  MELKWVLFCSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA 60
          MELKWVL CSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA
Sbjct: 1  MELKWVLLCSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA 60

Query: 61 ENGRDLRTTKLCELSDLRLFRLSSY 86
          ENGRDLRTTKLCELSDLRLFRLSSY
Sbjct: 61 ENGRDLRTTKLCELSDLRLFRLSSY 85

[Close]

BLAST of CSPI02G07380 vs. NCBI nr
Match: gi|700206161|gb|KGN61280.1| (hypothetical protein Csa_2G075390 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.3e-42
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1


Query: 1  MELKWVLFCSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA 60
          MELKWVL CSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA
Sbjct: 1  MELKWVLLCSSSEWEFLAWDFVLWGFQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAA 60

Query: 61 ENGRDLRTTKLCELSDLRLFRLSSY 86
          ENGRDLRTTKLCELSDLRLFRLSSY
Sbjct: 61 ENGRDLRTTKLCELSDLRLFRLSSY 85

The following BLAST results are available for this feature:

BLAST of CSPI02G07380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G07380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH52_CUCSA	3.0e-42	98.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075390 PE=4 SV=1	[more]

BLAST of CSPI02G07380 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G07380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206161\|gb\|KGN61280.1\|	4.3e-42	98.82	hypothetical protein Csa_2G075390 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G07380.1	CSPI02G07380.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G07380	Csa2G075390	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G07380	CsaV3_2G009840	Cucumber (Chinese Long) v3	cpicucB080

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G07380	Cucumber (Gy14) v1	cgycpiB284
CSPI02G07380	Cucurbita maxima (Rimu)	cmacpiB166
CSPI02G07380	Cucurbita maxima (Rimu)	cmacpiB795
CSPI02G07380	Cucurbita moschata (Rifu)	cmocpiB151
CSPI02G07380	Cucurbita moschata (Rifu)	cmocpiB784
CSPI02G07380	Melon (DHL92) v3.5.1	cpimeB139
CSPI02G07380	Watermelon (Charleston Gray)	cpiwcgB110
CSPI02G07380	Watermelon (97103) v1	cpiwmB158
CSPI02G07380	Cucurbita pepo (Zucchini)	cpecpiB094
CSPI02G07380	Cucurbita pepo (Zucchini)	cpecpiB812
CSPI02G07380	Bottle gourd (USVL1VR-Ls)	cpilsiB096
CSPI02G07380	Melon (DHL92) v3.6.1	cpimedB132
CSPI02G07380	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G07380	Silver-seed gourd	carcpiB0191
CSPI02G07380	Silver-seed gourd	carcpiB0752
CSPI02G07380	Watermelon (97103) v2	cpiwmbB111
CSPI02G07380	Wax gourd	cpiwgoB139