CsaV3_2G009840 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G009840
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 6419149 .. 6419725 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAATTTCCCCGATTTTCTTGCGGTCTGTTTTCTTCTCCTTTTCTCCTCCGATAATTTGGTTTTTTTCTTTGATTCATTGCTCAGCAACTCGATGCAAGATTCCCCAACTTTTTTCTCTCTCTTTTCTCTTGTTTTTTTTCTCTTGCTTTTTGGTTGGGGGTTTTTGAATCGAACTTGCTCTTGCTGCCAATTGTTGAGTTTTTAGTTGGTGGAGGGTTTTTTTTATTCTTGTATTTTTTTTAAAAAAAAATGAATTGCTTCTCGATGGAATTGAAGTGGGTATTGCTTTGTTCATCAAGTGAATGGGAGTTTCTTGCTTGGGATTTCGTTCTTTGGGGCTTTCAAGCTCTGTGTTTACTTTATTAATAAATGGGTTTTCATTCTGTTTATTGTTTCTTCTGCAGATTTGGGGTTTCTGATTGCTTCATTGTGTGGCAGAAGGCAGCAGAGTTTGAGATCAGGCTGTTTGTGTGGTGTCTGTCAGTTCAGTTAGCTGCTGAAAATGGTCGAGATTTGAGGACGACGAAGTTATGTGAGTTATCTGATTTGAGGCTCTTTCGGTTGTCTAGCTACTGA

mRNA sequence

ATGGGTTTTCATTCTGTTTATTGTTTCTTCTGCAGATTTGGGGTTTCTGATTGCTTCATTGTGTGGCAGAAGGCAGCAGAGTTTGAGATCAGGCTGTTTGTGTGGTGTCTGTCAGTTCAGTTAGCTGCTGAAAATGGTCGAGATTTGAGGACGACGAAGTTATGTGAGTTATCTGATTTGAGGCTCTTTCGGTTGTCTAGCTACTGA

Coding sequence (CDS)

ATGGGTTTTCATTCTGTTTATTGTTTCTTCTGCAGATTTGGGGTTTCTGATTGCTTCATTGTGTGGCAGAAGGCAGCAGAGTTTGAGATCAGGCTGTTTGTGTGGTGTCTGTCAGTTCAGTTAGCTGCTGAAAATGGTCGAGATTTGAGGACGACGAAGTTATGTGAGTTATCTGATTTGAGGCTCTTTCGGTTGTCTAGCTACTGA

Protein sequence

MGFHSVYCFFCRFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAAENGRDLRTTKLCELSDLRLFRLSSY
Homology
[Close]
BLAST of CsaV3_2G009840 vs. NCBI nr
Match: KGN61280.1 (hypothetical protein Csa_2G075390 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 9  FFCRFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAAENGRDLRTTKLCELSDLRLFRLSSY 68
          F   FGVSDCFIVWQKAAEFEIRLFVWCLSVQLAAENGRDLRTTKLCELSDLRLFRLSSY
Sbjct: 26 FQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAAENGRDLRTTKLCELSDLRLFRLSSY 85

[Close]
BLAST of CsaV3_2G009840 vs. TrEMBL
Match: tr|A0A0A0LH52|A0A0A0LH52_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G075390 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.3e-24
Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 9  FFCRFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAAENGRDLRTTKLCELSDLRLFRLSSY 68
          F   FGVSDCFIVWQKAAEFEIRLFVWCLSVQLAAENGRDLRTTKLCELSDLRLFRLSSY
Sbjct: 26 FQALFGVSDCFIVWQKAAEFEIRLFVWCLSVQLAAENGRDLRTTKLCELSDLRLFRLSSY 85

The following BLAST results are available for this feature:
BLAST of CsaV3_2G009840 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61280.11.4e-2395.00hypothetical protein Csa_2G075390 [Cucumis sativus][more]
BLAST of CsaV3_2G009840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LH52|A0A0A0LH52_CUCSA9.3e-2495.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G075390 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G009840.1CsaV3_2G009840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G009840CSPI02G07380Wild cucumber (PI 183967)cpicucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G009840Silver-seed gourdcarcucB0191
CsaV3_2G009840Silver-seed gourdcarcucB0755
CsaV3_2G009840Cucumber (Gy14) v2cgybcucB064
CsaV3_2G009840Cucumber (Gy14) v1cgycucB287
CsaV3_2G009840Cucurbita maxima (Rimu)cmacucB0193
CsaV3_2G009840Cucurbita maxima (Rimu)cmacucB0928
CsaV3_2G009840Cucurbita moschata (Rifu)cmocucB0177
CsaV3_2G009840Cucurbita moschata (Rifu)cmocucB0920
CsaV3_2G009840Cucurbita pepo (Zucchini)cpecucB0108
CsaV3_2G009840Cucurbita pepo (Zucchini)cpecucB1005
CsaV3_2G009840Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G009840Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G009840Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G009840Watermelon (Charleston Gray)cucwcgB119
CsaV3_2G009840Watermelon (97103) v1cucwmB167
CsaV3_2G009840Watermelon (97103) v2cucwmbB114
CsaV3_2G009840Wax gourdcucwgoB146