Csa2G068690 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G068690
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionATP-dependent RNA helicase DOB1; contains IPR012961 (DSH, C-terminal)
LocationChr2 : 5319712 .. 5320518 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGAAAATCGAAAACTCATTTTGCTTGAAACTGTATTTCTCTAGCATTACTTTTCTATGCAGTGCATGTTCTAAATGGTTTCTTTCACTAAGAAGGACTAAATAACATACTACATTCTAAAGTAAAGTTCCTCAAATTTGCCAGTATCATGATCCGGGTGCTGAACTTTTATGTTCCTGGTTTTACATTGTAATAATGACTTTCTTGATACAGGGAGCAAGTTTCTCAGAGGTGATTCAAATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCTTGATGAATTCTTGAATCAGGTGCAGACGAATAACATATAGATTTACATATTTTCTGTCTTACTCTTGGTTGAAACCCTGAACCTGTTTCAGTTTTCAAAGACCTAGGAAAGTCATGTTTGGATTTTATATATTTGTCACAGAAATAAAGAAGCTTGGGCTTTTGGGATCCCCGAATAATAGGGTTTATGCTTCTTTTTCTATGGGATTCCTCTATCATGTTCAGGCTCTTTATTATTACTTTTTTAATTCAGTTGCGTGCTGCTGCCAATGCTGTGGGGGAGGTAAACTTAGAGAGCAAGTTTTCTGCAGCCAGTGAAAGCCTTCGCAGAGGTATAATGTTCGCAAACTCACTCTATTTGTAGATTGTCCCCTGCTTTGGTTGCATCTTCAGGGGTTCATGAAGCTCTGAGATTGTGGTTTTCACCAACCATTTTTCATAGAGGTATTTTCTCTATTTTCCATGTTTAAGATGTACTGGAATACAAATTTTTGGATATTTTAGCATAAACTAGAAA

mRNA sequence

ATGTGGGAAAATCGAAAACTCATTTTGCTTGAAACTGGAGCAAGTTTCTCAGAGGTGATTCAAATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCTTGATGAATTCTTGAATCAGTTGCGTGCTGCTGCCAATGCTGTGGGGGAGGTAAACTTAGAGAGCAAGTTTTCTGCAGCCAGTGAAAGCCTTCGCAGAGGTATAATGTTCGCAAACTCACTCTATTTGTAG

Coding sequence (CDS)

ATGTGGGAAAATCGAAAACTCATTTTGCTTGAAACTGGAGCAAGTTTCTCAGAGGTGATTCAAATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCTTGATGAATTCTTGAATCAGTTGCGTGCTGCTGCCAATGCTGTGGGGGAGGTAAACTTAGAGAGCAAGTTTTCTGCAGCCAGTGAAAGCCTTCGCAGAGGTATAATGTTCGCAAACTCACTCTATTTGTAG

Protein sequence

MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIMFANSLYL*
Homology
[Close]
BLAST of Csa2G068690 vs. Swiss-Prot
Match: HEN2_ARATH (DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana GN=HEN2 PE=1 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 4.0e-26
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1 

Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
           GASF+E+IQMTDIFEGSIIRSARRLDEFLNQLRAAA AVGE +LESKF+AASESLRRGIM
Sbjct: 929 GASFAEIIQMTDIFEGSIIRSARRLDEFLNQLRAAAEAVGESSLESKFAAASESLRRGIM 988

Query: 73  FANSLYL 80
           FANSLYL
Sbjct: 989 FANSLYL 995

[Close]
BLAST of Csa2G068690 vs. Swiss-Prot
Match: SK2L2_HUMAN (Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3)

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-13
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 12   TGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGI 71
            TGA+F+ + +MTD+FEGSIIR  RRL+E L Q+  AA A+G   LE+KF+     ++R I
Sbjct: 975  TGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDI 1034

Query: 72   MFANSLYL 80
            +FA SLYL
Sbjct: 1035 VFAASLYL 1042

[Close]
BLAST of Csa2G068690 vs. Swiss-Prot
Match: SK2L2_MOUSE (Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-13
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 12   TGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGI 71
            TGA+F+ + +MTD+FEGSIIR  RRL+E L Q+  AA A+G   LE+KF+     ++R I
Sbjct: 973  TGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDI 1032

Query: 72   MFANSLYL 80
            +FA SLYL
Sbjct: 1033 VFAASLYL 1040

[Close]
BLAST of Csa2G068690 vs. Swiss-Prot
Match: MTR4_CAEEL (mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 13   GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
            GA+FSE+++ TD+FEGSIIR+ RRL+E L ++  AA A+    LE KF  A ++L+R I+
Sbjct: 960  GATFSEIVKTTDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDARKNLKRDIV 1019

Query: 73   FANSLYL 80
            FA SLYL
Sbjct: 1020 FAASLYL 1026

[Close]
BLAST of Csa2G068690 vs. Swiss-Prot
Match: MTR4_ARATH (DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana GN=MTR4 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.2e-11
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
           G+ F EV+++  +FEGS+IR+ RR++E L QL  AA ++GE  LE+K   A   ++R I+
Sbjct: 922 GSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSIGETQLEAKLEEAVSKIKRDIV 981

Query: 73  FANSLYL 80
           FA SLYL
Sbjct: 982 FAASLYL 988

[Close]
BLAST of Csa2G068690 vs. TrEMBL
Match: A0A0A0LHE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G068690 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF 60
          MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF
Sbjct: 1  MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF 60

Query: 61 SAASESLRRGIMFANSLYL 80
          SAASESLRRGIMFANSLYL
Sbjct: 61 SAASESLRRGIMFANSLYL 79

[Close]
BLAST of Csa2G068690 vs. TrEMBL
Match: A0A059CJH4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00066 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-25
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
           GASF+EVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGE NLE+KF+AASESLRRGIM
Sbjct: 927 GASFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGETNLENKFAAASESLRRGIM 986

Query: 73  FANSLYL 80
           FANSLYL
Sbjct: 987 FANSLYL 993

[Close]
BLAST of Csa2G068690 vs. TrEMBL
Match: B9HBA6_POPTR (HUA ENHANCER 2 family protein OS=Populus trichocarpa GN=POPTR_0006s07760g PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-25
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
           GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAA AVGEV+LESKF+AASESLRRGIM
Sbjct: 919 GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVSLESKFAAASESLRRGIM 978

Query: 73  FANSLYL 80
           FANSLYL
Sbjct: 979 FANSLYL 985

[Close]
BLAST of Csa2G068690 vs. TrEMBL
Match: A0A0B0P7U0_GOSAR (Superkiller viralicidic activity 2-like 2 OS=Gossypium arboreum GN=F383_08319 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.0e-25
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
           GA+F+EVIQMTDIFEGSIIRSARRLDEFLNQLRAAA AVGEVNLESKF+AASESLRRGIM
Sbjct: 924 GATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLESKFAAASESLRRGIM 983

Query: 73  FANSLYL 80
           FANSLYL
Sbjct: 984 FANSLYL 990

[Close]
BLAST of Csa2G068690 vs. TrEMBL
Match: F6H9P7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00340 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.3e-25
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
           GA+F+EVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGE NLE+KF+AASESLRRGIM
Sbjct: 929 GATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEANLENKFAAASESLRRGIM 988

Query: 73  FANSLYL 80
           FANSLYL
Sbjct: 989 FANSLYL 995

[Close]
BLAST of Csa2G068690 vs. TAIR10
Match: AT2G06990.1 (AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein)

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-27
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1 

Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
           GASF+E+IQMTDIFEGSIIRSARRLDEFLNQLRAAA AVGE +LESKF+AASESLRRGIM
Sbjct: 929 GASFAEIIQMTDIFEGSIIRSARRLDEFLNQLRAAAEAVGESSLESKFAAASESLRRGIM 988

Query: 73  FANSLYL 80
           FANSLYL
Sbjct: 989 FANSLYL 995

[Close]
BLAST of Csa2G068690 vs. TAIR10
Match: AT1G59760.1 (AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein)

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-12
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
           G+ F EV+++  +FEGS+IR+ RR++E L QL  AA ++GE  LE+K   A   ++R I+
Sbjct: 922 GSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSIGETQLEAKLEEAVSKIKRDIV 981

Query: 73  FANSLYL 80
           FA SLYL
Sbjct: 982 FAASLYL 988

[Close]
BLAST of Csa2G068690 vs. TAIR10
Match: AT3G46960.1 (AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-09
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 1 

Query: 3    ENRKLILLET------GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNL 62
            EN K  L+E       G  F+E+ ++TD+ EG I+R+  RLDE   + + AA  +G   L
Sbjct: 1262 ENLKFGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSAL 1321

Query: 63   ESKFSAASESLRRGIMFANSLYL 80
              K  AAS +++R I+FA SLY+
Sbjct: 1322 HKKMDAASNAIKRDIVFAASLYV 1344

[Close]
BLAST of Csa2G068690 vs. NCBI nr
Match: gi|700206079|gb|KGN61198.1| (hypothetical protein Csa_2G068690 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 5.2e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF 60
          MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF
Sbjct: 1  MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF 60

Query: 61 SAASESLRRGIMFANSLYL 80
          SAASESLRRGIMFANSLYL
Sbjct: 61 SAASESLRRGIMFANSLYL 79

[Close]
BLAST of Csa2G068690 vs. NCBI nr
Match: gi|449470374|ref|XP_004152892.1| (PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-26
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 13   GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
            GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM
Sbjct: 948  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 1007

Query: 73   FANSLYL 80
            FANSLYL
Sbjct: 1008 FANSLYL 1014

[Close]
BLAST of Csa2G068690 vs. NCBI nr
Match: gi|659069579|ref|XP_008450745.1| (PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-26
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 13   GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
            GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAAS+SLRRGIM
Sbjct: 948  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASDSLRRGIM 1007

Query: 73   FANSLYL 80
            FANSLYL
Sbjct: 1008 FANSLYL 1014

[Close]
BLAST of Csa2G068690 vs. NCBI nr
Match: gi|702288787|ref|XP_010046886.1| (PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 122.5 bits (306), Expect = 3.4e-25
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
           GASF+EVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGE NLE+KF+AASESLRRGIM
Sbjct: 927 GASFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGETNLENKFAAASESLRRGIM 986

Query: 73  FANSLYL 80
           FANSLYL
Sbjct: 987 FANSLYL 993

[Close]
BLAST of Csa2G068690 vs. NCBI nr
Match: gi|702288797|ref|XP_010046888.1| (PREDICTED: superkiller viralicidic activity 2-like 2 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 122.5 bits (306), Expect = 3.4e-25
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIM 72
           GASF+EVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGE NLE+KF+AASESLRRGIM
Sbjct: 895 GASFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGETNLENKFAAASESLRRGIM 954

Query: 73  FANSLYL 80
           FANSLYL
Sbjct: 955 FANSLYL 961

The following BLAST results are available for this feature:
BLAST of Csa2G068690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HEN2_ARATH4.0e-2691.04DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana GN=HEN2 PE=1 ... [more]
SK2L2_HUMAN3.0e-1352.94Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3[more]
SK2L2_MOUSE3.0e-1352.94Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=1 SV=1[more]
MTR4_CAEEL1.1e-1253.73mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1[more]
MTR4_ARATH6.2e-1147.76DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana GN=MTR4 PE=2 S... [more]
BLAST of Csa2G068690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHE5_CUCSA3.6e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G068690 PE=4 SV=1[more]
A0A059CJH4_EUCGR2.4e-2594.03Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00066 PE=4 SV=1[more]
B9HBA6_POPTR3.1e-2595.52HUA ENHANCER 2 family protein OS=Populus trichocarpa GN=POPTR_0006s07760g PE=4 S... [more]
A0A0B0P7U0_GOSAR4.0e-2594.03Superkiller viralicidic activity 2-like 2 OS=Gossypium arboreum GN=F383_08319 PE... [more]
F6H9P7_VITVI5.3e-2592.54Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00340 PE=4 SV=... [more]
BLAST of Csa2G068690 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G06990.12.3e-2791.04 RNA helicase, ATP-dependent, SK12/DOB1 protein[more]
AT1G59760.13.5e-1247.76 RNA helicase, ATP-dependent, SK12/DOB1 protein[more]
AT3G46960.12.1e-0939.76 RNA helicase, ATP-dependent, SK12/DOB1 protein[more]
BLAST of Csa2G068690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206079|gb|KGN61198.1|5.2e-34100.00hypothetical protein Csa_2G068690 [Cucumis sativus][more]
gi|449470374|ref|XP_004152892.1|1.1e-26100.00PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis sativus][more]
gi|659069579|ref|XP_008450745.1|2.4e-2698.51PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis melo][more]
gi|702288787|ref|XP_010046886.1|3.4e-2594.03PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Eucalyptus gran... [more]
gi|702288797|ref|XP_010046888.1|3.4e-2594.03PREDICTED: superkiller viralicidic activity 2-like 2 isoform X2 [Eucalyptus gran... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012961Ski2_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045010 actin nucleation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
biological_process GO:0060149 negative regulation of posttranscriptional gene silencing
biological_process GO:0006397 mRNA processing
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0010093 specification of floral organ identity
biological_process GO:0009845 seed germination
biological_process GO:0010162 seed dormancy process
biological_process GO:0007155 cell adhesion
biological_process GO:0050826 response to freezing
biological_process GO:0009909 regulation of flower development
biological_process GO:0006401 RNA catabolic process
biological_process GO:0016579 protein deubiquitination
biological_process GO:0019915 lipid storage
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0043687 post-translational protein modification
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009640 photomorphogenesis
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0009933 meristem structural organization
biological_process GO:0000338 protein deneddylation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016571 histone methylation
cellular_component GO:0055087 Ski complex
cellular_component GO:0016607 nuclear speck
cellular_component GO:0005634 nucleus
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0005829 cytosol
molecular_function GO:0003724 RNA helicase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004004 ATP-dependent RNA helicase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU118486cucumber EST collection version 3.0transcribed_cluster
CU123622cucumber EST collection version 3.0transcribed_cluster
CU123653cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G068690.1Csa2G068690.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU123653CU123653transcribed_cluster
CU123622CU123622transcribed_cluster
CU118486CU118486transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012961ATP-dependent RNA helicase Ski2, C-terminalPFAMPF08148DSHCTcoord: 13..74
score: 7.0
IPR012961ATP-dependent RNA helicase Ski2, C-terminalSMARTSM01142DSHCT_2coord: 1..79
score: 1.