CU123653 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU123653
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ATP-dependent RNA helicase
Location	Chr2 : 5312385 .. 5320026 (+)
Sequence length	221

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CAAGATAGTGCAAGAAGAATTGCTGAGATACAACATGAGTGCAAGTTGGATATAAATGTGGAAGAATATGTGGAATCAACAGTAAGGCCGCATTTGATGGATGTCATTTACTGTTGGTCAAAGGGAGCAAGTTTCTCAGAGGTGATTCAAATGACAGATATTTTCGAGGGTAGCATCATCCGAAGTGCTAGACGGCTTGATGAATTCTCGAATCAGTTGCG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU123653 vs. Swiss-Prot
Match: HEN2_ARATH (DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana GN=HEN2 PE=1 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-30
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           QDSAR+IAEIQHECKL+I+VEEYVEST+RP LMDVIY WSKGASF+E+IQMTDIFEGSII
Sbjct: 888 QDSARKIAEIQHECKLEIDVEEYVESTIRPFLMDVIYSWSKGASFAEIIQMTDIFEGSII 947

Query: 61  RSARRLDEFSNQL 120
           RSARRLDEF NQL
Sbjct: 948 RSARRLDEFLNQL 960

Query: 121  180
           
Sbjct: 1008  960

Query: 181  220
           
Sbjct: 1068  960

[Close]

BLAST of CU123653 vs. Swiss-Prot
Match: MTR4_ARATH (DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana GN=MTR4 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-15
Identity = 36/73 (49.32%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           QD+ARR+AE+Q +CK++I+VE +V+S  RP +M+ +Y W+KG+ F EV+++  +FEGS+I
Sbjct: 882 QDTARRVAEVQLDCKVEIDVESFVQS-FRPDIMEAVYAWAKGSKFYEVMEIARVFEGSLI 941

Query: 61  RSARRLDEFSNQL 120
           R+ RR++E   QL
Sbjct: 942 RAIRRMEEVLQQL 953

Query: 121  180
           
Sbjct: 1002  953

Query: 181  220
           
Sbjct: 1062  953

[Close]

BLAST of CU123653 vs. Swiss-Prot
Match: SK2L2_HUMAN (Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-15
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 1    QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
            Q+ A+RIA++  E KL+I+ E Y+ S+ +PHLMDV+Y W+ GA+F+ + +MTD+FEGSII
Sbjct: 936  QECAKRIAKVSAEAKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVFEGSII 995

Query: 61   RSARRLDEFSNQL 120
            R  RRL+E   Q+
Sbjct: 996  RCMRRLEELLRQM 1007

Query: 121   180
            
Sbjct: 1056  1007

Query: 181   220
            
Sbjct: 1116  1007

[Close]

BLAST of CU123653 vs. Swiss-Prot
Match: SK2L2_MOUSE (Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-15
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 1    QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
            Q+ A+RIA++  E KL+I+ E Y+ S+ +PHLMDV+Y W+ GA+F+ + +MTD+FEGSII
Sbjct: 934  QECAKRIAKVSAEAKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVFEGSII 993

Query: 61   RSARRLDEFSNQL 120
            R  RRL+E   Q+
Sbjct: 994  RCMRRLEELLRQM 1005

Query: 121   180
            
Sbjct: 1054  1005

Query: 181   220
            
Sbjct: 1114  1005

[Close]

BLAST of CU123653 vs. Swiss-Prot
Match: MTR4_SCHPO (ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.0e-15
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1


Query: 1    QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
            Q+ ARRIA++  E K ++N EEYV S  +P LM+V+Y W+ GASF+++ +MTD++EGS+I
Sbjct: 1011 QEMARRIAKVSKESKQELNEEEYVNS-FKPSLMEVVYAWAHGASFAQICKMTDVYEGSLI 1070

Query: 61   RSARRLDEFSNQL 120
            R  RRL+E   Q+
Sbjct: 1071 RMFRRLEELIRQM 1082

Query: 121   180
            
Sbjct: 1131  1082

Query: 181   220
            
Sbjct: 1191  1082

[Close]

BLAST of CU123653 vs. TrEMBL
Match: A0A059CJH4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00066 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-30
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           QDSARRIAE+Q ECKLD+NVEEYVESTVRP+LMDVIYCWSKGASF+EVIQMTDIFEGSII
Sbjct: 886 QDSARRIAEVQKECKLDVNVEEYVESTVRPYLMDVIYCWSKGASFAEVIQMTDIFEGSII 945

Query: 61  RSARRLDEFSNQL 120
           RSARRLDEF NQL
Sbjct: 946 RSARRLDEFLNQL 958

Query: 121  180
           
Sbjct: 1006  958

Query: 181  220
           
Sbjct: 1066  958

[Close]

BLAST of CU123653 vs. TrEMBL
Match: W9RVH1_9ROSA (Superkiller viralicidic activity 2-like 2 OS=Morus notabilis GN=L484_008223 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.0e-30
Identity = 66/73 (90.41%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           QDSARRIAEIQHECKL+INV+EYVESTVRP+LMDVIYCWSKGA+F++VIQMTDIFEGSII
Sbjct: 874 QDSARRIAEIQHECKLEINVDEYVESTVRPYLMDVIYCWSKGANFADVIQMTDIFEGSII 933

Query: 61  RSARRLDEFSNQL 120
           RSARRLDEF NQL
Sbjct: 934 RSARRLDEFLNQL 946

Query: 121  180
           
Sbjct: 994  946

Query: 181  220
           
Sbjct: 1054  946

[Close]

BLAST of CU123653 vs. TrEMBL
Match: F6H9P7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00340 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.5e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           QDSARRIAEIQHECKL++NV+EYVEST RP+LMDVIYCWSKGA+F+EVIQMTDIFEGSII
Sbjct: 888 QDSARRIAEIQHECKLEVNVDEYVESTARPYLMDVIYCWSKGATFAEVIQMTDIFEGSII 947

Query: 61  RSARRLDEFSNQL 120
           RSARRLDEF NQL
Sbjct: 948 RSARRLDEFLNQL 960

Query: 121  180
           
Sbjct: 1008  960

Query: 181  220
           
Sbjct: 1068  960

[Close]

BLAST of CU123653 vs. TrEMBL
Match: A0A067LM94_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17082 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-29
Identity = 66/73 (90.41%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           Q+SAR+IAEIQ+ECKLDINV+EYVESTVRP+LMDVIYCWSKGASF+EVIQMTDIFEGSII
Sbjct: 882 QESARKIAEIQYECKLDINVDEYVESTVRPYLMDVIYCWSKGASFAEVIQMTDIFEGSII 941

Query: 61  RSARRLDEFSNQL 120
           RSARRLDEF NQL
Sbjct: 942 RSARRLDEFLNQL 954

Query: 121  180
           
Sbjct: 1002  954

Query: 181  220
           
Sbjct: 1062  954

[Close]

BLAST of CU123653 vs. TrEMBL
Match: A0A0B0P7U0_GOSAR (Superkiller viralicidic activity 2-like 2 OS=Gossypium arboreum GN=F383_08319 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-29
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           Q+SAR+IAEIQHECKLD+N++EYVESTVRP LMDVIYCWSKGA+F+EVIQMTDIFEGSII
Sbjct: 883 QESARKIAEIQHECKLDVNIDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSII 942

Query: 61  RSARRLDEFSNQL 120
           RSARRLDEF NQL
Sbjct: 943 RSARRLDEFLNQL 955

Query: 121  180
           
Sbjct: 1003  955

Query: 181  220
           
Sbjct: 1063  955

[Close]

BLAST of CU123653 vs. NCBI nr
Match: gi|449470374|ref|XP_004152892.1| (PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-32
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII
Sbjct: 907 QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 966

Query: 61  RSARRLDEFSNQL 120
           RSARRLDEF NQL
Sbjct: 967 RSARRLDEFLNQL 979

Query: 121  180
           
Sbjct: 1027  979

Query: 181  220
           
Sbjct: 1087  979

[Close]

BLAST of CU123653 vs. NCBI nr
Match: gi|659069579|ref|XP_008450745.1| (PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 7.6e-32
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           QDSARRIAEIQHECKLDINVEEYVESTVRP+LMDVIYCWSKGASFSEVIQMTDIFEGSII
Sbjct: 907 QDSARRIAEIQHECKLDINVEEYVESTVRPYLMDVIYCWSKGASFSEVIQMTDIFEGSII 966

Query: 61  RSARRLDEFSNQL 120
           RSARRLDEF NQL
Sbjct: 967 RSARRLDEFLNQL 979

Query: 121  180
           
Sbjct: 1027  979

Query: 181  220
           
Sbjct: 1087  979

[Close]

BLAST of CU123653 vs. NCBI nr
Match: gi|702288787|ref|XP_010046886.1| (PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-30
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           QDSARRIAE+Q ECKLD+NVEEYVESTVRP+LMDVIYCWSKGASF+EVIQMTDIFEGSII
Sbjct: 886 QDSARRIAEVQKECKLDVNVEEYVESTVRPYLMDVIYCWSKGASFAEVIQMTDIFEGSII 945

Query: 61  RSARRLDEFSNQL 120
           RSARRLDEF NQL
Sbjct: 946 RSARRLDEFLNQL 958

Query: 121  180
           
Sbjct: 1006  958

Query: 181  220
           
Sbjct: 1066  958

[Close]

BLAST of CU123653 vs. NCBI nr
Match: gi|703139301|ref|XP_010106947.1| (Superkiller viralicidic activity 2-like 2 [Morus notabilis])

HSP 1 Score: 138.3 bits (347), Expect = 5.5e-30
Identity = 66/73 (90.41%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           QDSARRIAEIQHECKL+INV+EYVESTVRP+LMDVIYCWSKGA+F++VIQMTDIFEGSII
Sbjct: 874 QDSARRIAEIQHECKLEINVDEYVESTVRPYLMDVIYCWSKGANFADVIQMTDIFEGSII 933

Query: 61  RSARRLDEFSNQL 120
           RSARRLDEF NQL
Sbjct: 934 RSARRLDEFLNQL 946

Query: 121  180
           
Sbjct: 994  946

Query: 181  220
           
Sbjct: 1054  946

[Close]

BLAST of CU123653 vs. NCBI nr
Match: gi|297736019|emb|CBI24057.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 137.5 bits (345), Expect = 9.3e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1   QDSARRIAEIQHECKLDINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIFEGSII 60
           QDSARRIAEIQHECKL++NV+EYVEST RP+LMDVIYCWSKGA+F+EVIQMTDIFEGSII
Sbjct: 831 QDSARRIAEIQHECKLEVNVDEYVESTARPYLMDVIYCWSKGATFAEVIQMTDIFEGSII 890

Query: 61  RSARRLDEFSNQL 120
           RSARRLDEF NQL
Sbjct: 891 RSARRLDEFLNQL 903

Query: 121  180
           
Sbjct: 951  903

Query: 181  220
           
Sbjct: 1011  903

The following BLAST results are available for this feature:

BLAST of CU123653 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HEN2_ARATH	1.9e-30	87.67	DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana GN=HEN2 PE=1 ...	[more]
MTR4_ARATH	1.0e-15	49.32	DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana GN=MTR4 PE=2 S...	[more]
SK2L2_HUMAN	1.3e-15	52.05	Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3	[more]
SK2L2_MOUSE	1.3e-15	52.05	Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=1 SV=1	[more]
MTR4_SCHPO	5.0e-15	50.68	ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]

BLAST of CU123653 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059CJH4_EUCGR	2.9e-30	91.78	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00066 PE=4 SV=1	[more]
W9RVH1_9ROSA	5.0e-30	90.41	Superkiller viralicidic activity 2-like 2 OS=Morus notabilis GN=L484_008223 PE=4...	[more]
F6H9P7_VITVI	8.5e-30	89.04	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00340 PE=4 SV=...	[more]
A0A067LM94_JATCU	1.1e-29	90.41	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17082 PE=4 SV=1	[more]
A0A0B0P7U0_GOSAR	1.9e-29	87.67	Superkiller viralicidic activity 2-like 2 OS=Gossypium arboreum GN=F383_08319 PE...	[more]

BLAST of CU123653 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470374\|ref\|XP_004152892.1\|	1.5e-32	98.63	PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis sativus]	[more]
gi\|659069579\|ref\|XP_008450745.1\|	7.6e-32	97.26	PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis melo]	[more]
gi\|702288787\|ref\|XP_010046886.1\|	3.2e-30	91.78	PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Eucalyptus gran...	[more]
gi\|703139301\|ref\|XP_010106947.1\|	5.5e-30	90.41	Superkiller viralicidic activity 2-like 2 [Morus notabilis]	[more]
gi\|297736019\|emb\|CBI24057.3\|	9.3e-30	89.04	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR012961	Ski2_C

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G068690	Csa2G068690	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KMCAA	FKNP3UI02KMCAA	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012961	ATP-dependent RNA helicase Ski2, C-terminal	PFAM	PF08148	DSHCT	coord: 4..74 score: 9.8
IPR012961	ATP-dependent RNA helicase Ski2, C-terminal	SMART	SM01142	DSHCT_2	coord: 1..73 score: 7.