CU123622 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU123622
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionATP-dependent RNA helicase DOB1
LocationChr2 : 5312521 .. 5320009 (+)
Sequence length162
The following sequences are available for this feature:

transcribed_cluster sequence

TGGGATATAAATGTGGAAGAATATGTGGAATCAACAGTAAGGCCGCATTTGATGGATGTCATTTACTGTTGGTCAAAGGGAGCAAGTTTCTCAGAGGTGATTCAAAATGACAGACTATTTTCGAGGGTAGTCGATCATTCGAAGTGCTAGACGGCTTGATGA
Library categoryESTs
fruit (8DPP) library1
BLAST of CU123622 vs. Swiss-Prot
Match: HEN2_ARATH (DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana GN=HEN2 PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-09
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1

Query: 4   DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQNDRLF 63
           +I+VEEYVEST+RP LMDVIY WSKGASF+E+IQ   +F
Sbjct: 904 EIDVEEYVESTIRPFLMDVIYSWSKGASFAEIIQMTDIF 942

Query: 64  121
           
Sbjct: 964 942

BLAST of CU123622 vs. TrEMBL
Match: A0A059CJH4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00066 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-10
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1

Query: 4   DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQNDRLF 63
           D+NVEEYVESTVRP+LMDVIYCWSKGASF+EVIQ   +F
Sbjct: 902 DVNVEEYVESTVRPYLMDVIYCWSKGASFAEVIQMTDIF 940

Query: 64  121
           
Sbjct: 962 940

BLAST of CU123622 vs. TrEMBL
Match: A0A067LM94_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17082 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.2e-10
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1

Query: 4   DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQNDRLF 63
           DINV+EYVESTVRP+LMDVIYCWSKGASF+EVIQ   +F
Sbjct: 898 DINVDEYVESTVRPYLMDVIYCWSKGASFAEVIQMTDIF 936

Query: 64  121
           
Sbjct: 958 936

BLAST of CU123622 vs. TrEMBL
Match: A0A0K9RHG7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071150 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-09
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1

Query: 4   DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQNDRLF 63
           D+NVEEYVEST RP+LMDVIYCWSKGA+FSEVIQ   +F
Sbjct: 946 DVNVEEYVESTARPYLMDVIYCWSKGANFSEVIQMTDIF 984

Query: 64  121
           
Sbjct: 1006 984

BLAST of CU123622 vs. TrEMBL
Match: U5FGE4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s14280g PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-09
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 1

Query: 4   DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQNDRLFSRVVDHS 63
           DINV+EYVESTVRP LMDVIYCWSKGASFSEV+Q   +F   V  S
Sbjct: 841 DINVDEYVESTVRPFLMDVIYCWSKGASFSEVMQMTDIFEGSVIRS 886

Query: 64  123
           
Sbjct: 901 886

Query: 124 142
           
Sbjct: 961 886

BLAST of CU123622 vs. TrEMBL
Match: A0A0J8CVK1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035760 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-09
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1

Query: 4    DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQNDRLF 63
            D+NVEEYVEST RP+LMDVIYCWSKGA+FSEVIQ   +F
Sbjct: 962  DVNVEEYVESTARPYLMDVIYCWSKGANFSEVIQMTDIF 1000

Query: 64   121
            
Sbjct: 1022 1000

BLAST of CU123622 vs. NCBI nr
Match: gi|449470374|ref|XP_004152892.1| (PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.0e-12
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1

Query: 4   DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQNDRLF 63
           DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQ   +F
Sbjct: 923 DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQMTDIF 961

Query: 64  121
           
Sbjct: 983 961

BLAST of CU123622 vs. NCBI nr
Match: gi|659069579|ref|XP_008450745.1| (PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-11
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 1

Query: 4   DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQNDRLF 63
           DINVEEYVESTVRP+LMDVIYCWSKGASFSEVIQ   +F
Sbjct: 923 DINVEEYVESTVRPYLMDVIYCWSKGASFSEVIQMTDIF 961

Query: 64  121
           
Sbjct: 983 961

BLAST of CU123622 vs. NCBI nr
Match: gi|702288787|ref|XP_010046886.1| (PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 74.3 bits (181), Expect = 7.2e-11
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1

Query: 4   DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQNDRLF 63
           D+NVEEYVESTVRP+LMDVIYCWSKGASF+EVIQ   +F
Sbjct: 902 DVNVEEYVESTVRPYLMDVIYCWSKGASFAEVIQMTDIF 940

Query: 64  121
           
Sbjct: 962 940

BLAST of CU123622 vs. NCBI nr
Match: gi|566215817|ref|XP_006372203.1| (hypothetical protein POPTR_0018s14280g [Populus trichocarpa])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 1

Query: 4   DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQNDRLFSRVVDHS 63
           DINV+EYVESTVRP LMDVIYCWSKGASFSEV+Q   +F   V  S
Sbjct: 841 DINVDEYVESTVRPFLMDVIYCWSKGASFSEVMQMTDIFEGSVIRS 886

Query: 64  123
           
Sbjct: 901 886

Query: 124 142
           
Sbjct: 961 886

BLAST of CU123622 vs. NCBI nr
Match: gi|802542055|ref|XP_012080959.1| (PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1

Query: 4   DINVEEYVESTVRPHLMDVIYCWSKGASFSEVIQNDRLF 63
           DINV+EYVESTVRP+LMDVIYCWSKGASF+EVIQ   +F
Sbjct: 898 DINVDEYVESTVRPYLMDVIYCWSKGASFAEVIQMTDIF 936

Query: 64  121
           
Sbjct: 958 936

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
HEN2_ARATH1.8e-0971.79DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana GN=HEN2 PE=1 ... [more]
Match NameE-valueIdentityDescription
A0A059CJH4_EUCGR4.2e-1082.05Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00066 PE=4 SV=1[more]
A0A067LM94_JATCU7.2e-1082.05Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17082 PE=4 SV=1[more]
A0A0K9RHG7_SPIOL1.2e-0979.49Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071150 PE=4 SV=1[more]
U5FGE4_POPTR1.2e-0973.91Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s14280g PE=4 SV=1[more]
A0A0J8CVK1_BETVU1.2e-0979.49Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035760 PE=4 S... [more]
Match NameE-valueIdentityDescription
gi|449470374|ref|XP_004152892.1|5.0e-1289.74PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis sativus][more]
gi|659069579|ref|XP_008450745.1|2.5e-1187.18PREDICTED: superkiller viralicidic activity 2-like 2 [Cucumis melo][more]
gi|702288787|ref|XP_010046886.1|7.2e-1182.05PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Eucalyptus gran... [more]
gi|566215817|ref|XP_006372203.1|1.2e-1073.91hypothetical protein POPTR_0018s14280g [Populus trichocarpa][more]
gi|802542055|ref|XP_012080959.1|1.2e-1082.05PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa2G068690Csa2G068690gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02KLSUFFKNP3UI02KLSUFEST