Csa2G023860 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G023860
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	50S ribosomal protein L27; contains IPR001684 (Ribosomal protein L27)
Location	Chr2 : 2768738 .. 2771773 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAACCATCGGCGTTGTTCATCTTCTCACCTGCGATTCACAAACGGTCACCACCACCGTCCTCCTTCATTCGGCGATTCACGAACCACACCACCACCTTCAGTTTTTTCGCTGCCTCCGTCGCGGCCGCCGTTCAAGGTTTGTCTTTTCATTTCTGTCTTCATTTCCATAACTTATTTGTTTCAACTTCAATTTTCTAGTTAAAATTTAATTTAAGTTTGATTTAGAAATATGTTCAACTAAATTTGCATCTTGACAATTAACACAAAGCTTTTTTTTTTTAGTAGATTACATTTCTATCCTAGTTTTTTTGGAGATTAGTGTATCACTGTCATCGTATCTCTACCTTATATCAGTGTCAACACTTTTTAGTTTTCAAATCTAGAAAACATTTTTTTAAATAAATATTTTCACCAAAACCTTGATGAAGGTCTATAGTGATCATGATTTTTTTAGTTTTTCCATTCACTAGTTACACGGGTTTGGATTCATTTCTCACCAAAATTTTTACATTTAGATTAGAATCAGGGAAGTCCCTGTTGACTATGTCAAATGTCATCTCTGTGGTCAAGTTAAATTATTCTATCTTTTTCCTTCAATTTCCATTCATCAATAGATTTGTTAGCAATGGGGAAGGTTTCTAGTATTTGCCTGCCGTTATCAAGGTTGATTGAAATTCCATATTAGTGTACAGGAGGAATGAGGATGTATTTGAGTACTTTTAAATGCACTCTACCTGCAATCTTACTTGCATACAGATAAGACTGATAAGTGATAACTGATAGGTTTGTTGTCATTGTCGGATTTGGCATCGCTTTCTTCGATGCAAATTTAAGTTTCATTGAGTCTATCATAAAAGATCAATTTTCAATAAAGTCATGGAACTCTGTCGGGTTAGGTTATGTTCGATGATGCTCTATGAGTTTTTTAGAATTTCAACTGTGTAGAAAACTTATTTTTTCTCTTAACTGGTGACTACTAGCTGTCTTTTCTAGTCAGCTTAGGGCTATTTTTTGCTTTAGTGTAAGATCCACTTCTTGAAAGGAAGTAAGAACCCCCTGTTAGTTTTGAGCTGATTATTAACTTCTGTAAGTTCAGTCTTGATTTCCACTTTCGTAGAACCTTTTTAAGTTCACTGTCATGGAATTAAGGCCCCATTTTGAAAAAAAAAAAACAAAATGGTTATCAAATGTGGCCCAAGTTCTTTTGATTTTTGAAATCCTCCAATTTTGTTGTTTCATAATAGTTAATAGTGTTTTCCATTAAGAAAAGAAATAGATCTAATAATGCCTAGTGATTATTGTATGATAGAACCTAAACAACTAGAACATTGTCCAAATATTATTCTTACTCAACAGTCAAGCCTACAGCCAGAAAACAATGGTATCTTCCTCTCTTCCCACTCTCTCTATATATAATCAATTCTAATAATTTTTACAACTCAAGGGCACAATTCTACAACCTATATAACAACTCCTGTTCAAATAAGTTAGTTACATAATCAATTCAAATTGCCTACTCTTTGGATAATTACTCTTATGAATTTAATAATTATTTTACTTGTTTGGTAAGCAAATTTTTTTCTTCTTTAATTTTATTATATAAATTGTTGTGTGCTTTTGCTAGGCATTGGTTGAAGCATTTGAATGGAAATCTACACTTTCACTTTGGTTTGCAATATCCGTGTCTGTTTCTTGAATTTGAGTTGTTAACCATGAAGGATTTAAATGATGTAACCTTTTGAAAAAGTTGTTGGAGGTTTGTTACAAAGTTTTTCGATATTAATAGTTGGCCATGGCCTGTTATTAGAATATGCAGGTAGCTTCTTGAACTAGATTATGTAATATATGGTAGATTTATATTGGAAGTTGTTCATTTGATCTTGTTGAACTATGTTTTACATGTGTTAAGTATCTTGTGACATTTTCAGGATAAACTACATATACATACAACCATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTCTATAGCAGTTTTAGTGGTAAGAATGGTTCATCCAGAACATGTTGTGTACTTATCATGCTAATTTGTCTTCATATTTTGGTGATTACATTGTTTGTTGAATCTAATCTCAGATGGAGCTACTGCTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCAACAAAAAATGGACGAGACTCGAATCCCAAGTATCTTGGTGTAAAGAAATTTGGTGGGGAGGTGAGTGGCAGGACAAACAAAAATCACATTGTCATAAAACTTGCACTGAAATTTCTATTTATTGAAGCGGTTTTGTTGTTAACTTATTTACGGAGAGTTATTCCTTCTGGATACAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAAGAAGGCAATGTCAAGTTTGAAAAGAACAAGCTGAGCGGGCGTAAGTGGGTACACGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGAAACTACTTCTACTTCTCTACAATTGAAGACAGCAGCATAATCTTTGGTGCTCGGTTGATGAACATGATCGGCAATGGTACAAATTTTCCTGTTGTTTGTCATGGTCCACACCAAATTTTAACCAAACTCGATCGCCTCGGGAGGAGGGGATGTAGGCAGTCTCTTTAAGCGCCTGTTTTTAATGTTTTATTATTTCTTTTTCTGGAAAGGCTATTGGATGTCACTTTAACCAATATGGATACGATGGACGTCCGCTTCTAGCTCGACCCGCTTAAAAATCTGATGGTGAAGAGAGAAATTTCCATTGTAATTAAGTTGCCTCTTTTTTAAGCAAGTGAAGATGTGCGAAGAATTATAGGTGTACTCCGAGTGAATTTCAGGCCCTCTTTTAACCTCCTCCCCTAGCAAGGAATATTTTCTCTATTGACATTTCAAATAGTTGGTTTAATAATATTTTCTCTATTGA

mRNA sequence

ATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTCTATAGCAGTTTTAGTGATGGAGCTACTGCTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCAACAAAAAATGGACGAGACTCGAATCCCAAGTATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAAGAAGGCAATGTCAAGTTTGAAAAGAACAAGCTGAGCGGGCGTAAGTGGGTACACGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGAAACTACTTCTACTTCTCTACAATTGAAGACAGCAGCATAA

Coding sequence (CDS)

ATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTCTATAGCAGTTTTAGTGATGGAGCTACTGCTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCAACAAAAAATGGACGAGACTCGAATCCCAAGTATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAAGAAGGCAATGTCAAGTTTGAAAAGAACAAGCTGAGCGGGCGTAAGTGGGTACACGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGAAACTACTTCTACTTCTCTACAATTGAAGACAGCAGCATAA

Protein sequence

MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA*

Homology

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BLAST of Csa2G023860 vs. Swiss-Prot
Match: RL27_BART1 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 59/83 (71.08%), Postives = 63/83 (75.90%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS  K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGNVKFEKNKLSGRKWVHVIP 126
           L EG V F++ K   R +V VIP
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

[Close]

BLAST of Csa2G023860 vs. Swiss-Prot
Match: RL27_BARHE (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.3e-25
Identity = 58/83 (69.88%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS  K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGNVKFEKNKLSGRKWVHVIP 126
           L +G V F++ K + R +V VIP
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

[Close]

BLAST of Csa2G023860 vs. Swiss-Prot
Match: RL27_ALTMD (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 55/82 (67.07%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GSTKNGRDS  K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 103 LKEGNVKFEKNKLSGRKWVHVI 125
           LK+G V+F+      RK+V ++
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

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BLAST of Csa2G023860 vs. Swiss-Prot
Match: RL27_AGRFC (50S ribosomal protein L27 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 57/84 (67.86%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS  K LGVKKFGGE VIPGNII+RQRGT++HPG  VGIGKDHT+FA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIPGNIILRQRGTQWHPGANVGIGKDHTIFA 61

Query: 103 LKEGNVKFEKNKLSGRKWVHVIPK 127
           L  GNV F + K +GR +V V PK
Sbjct: 62  LTAGNVNF-RTKANGRVFVSVAPK 84

[Close]

BLAST of Csa2G023860 vs. Swiss-Prot
Match: RL27_SINMW (50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 57/84 (67.86%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS  K LGVKKFGGE VI GNIIVRQRGT++HPG  VG+GKDHT+FA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGENVIAGNIIVRQRGTKWHPGANVGLGKDHTIFA 61

Query: 103 LKEGNVKFEKNKLSGRKWVHVIPK 127
           L  GNV F K K +GR +V V+PK
Sbjct: 62  LTAGNVDFRK-KANGRVYVSVMPK 84

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BLAST of Csa2G023860 vs. TrEMBL
Match: A0A0A0LIQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G023860 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 6.3e-80
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
           YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 149
           VHVIPKEGHVLHPVYETTSTSLQLKTAA
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 148

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BLAST of Csa2G023860 vs. TrEMBL
Match: V4SKH7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002763mg PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-61
Identity = 118/151 (78.15%), Postives = 131/151 (86.75%), Query Frame = 1


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           M N A T CKRLNVK+LV+NV VY S +DG+  GL+L+FRRWATKKTAGSTKNGRDS PK
Sbjct: 3   MFNFANTLCKRLNVKELVSNVSVYGSVADGSAGGLSLMFRRWATKKTAGSTKNGRDSKPK 62

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVG+GKDHTL+ALKEG VKFEK+KLSGRKW
Sbjct: 63  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKW 122

Query: 121 VHVIPKEGHVLHPVY---ETTSTSLQLKTAA 149
           VHV PKEGHVLHP+Y      ++S QL+TAA
Sbjct: 123 VHVEPKEGHVLHPLYANATANASSPQLETAA 153

[Close]

BLAST of Csa2G023860 vs. TrEMBL
Match: A0A061FDJ8_THECC (Ribosomal protein L27 family protein isoform 1 OS=Theobroma cacao GN=TCM_034043 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.8e-61
Identity = 116/147 (78.91%), Postives = 132/147 (89.80%), Query Frame = 1


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           M NIA TFCKR++VK+LVT+ PVY S +DG+++GL+L+F+RWATKKTAGSTKNGRDS PK
Sbjct: 1   MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEG VKFE  KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTA 148
           VHV PKEGHVLHPVY  T+ S +LKTA
Sbjct: 121 VHVEPKEGHVLHPVY-VTAASEELKTA 146

[Close]

BLAST of Csa2G023860 vs. TrEMBL
Match: A0A061FCK6_THECC (Ribosomal protein L27 family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_034043 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.8e-61
Identity = 116/147 (78.91%), Postives = 132/147 (89.80%), Query Frame = 1


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           M NIA TFCKR++VK+LVT+ PVY S +DG+++GL+L+F+RWATKKTAGSTKNGRDS PK
Sbjct: 34  MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 93

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEG VKFE  KLSGRKW
Sbjct: 94  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 153

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTA 148
           VHV PKEGHVLHPVY  T+ S +LKTA
Sbjct: 154 VHVEPKEGHVLHPVY-VTAASEELKTA 179

[Close]

BLAST of Csa2G023860 vs. TrEMBL
Match: V7BSH1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G024900g PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.2e-60
Identity = 112/140 (80.00%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 2   LNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPKY 61
           +N A +FC+RLN+K+LVTNVPVY S SD +  GL+++FRRWATKKTAGSTKNGRDS PK 
Sbjct: 1   MNFAASFCRRLNIKELVTNVPVYRSTSDVSGEGLSMVFRRWATKKTAGSTKNGRDSKPKN 60

Query: 62  LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKWV 121
           LGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTLFALKEG VKFEKNKL+GRKWV
Sbjct: 61  LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFEKNKLTGRKWV 120

Query: 122 HVIPKEGHVLHPVYETTSTS 142
           HV PKEGHVLHP+Y   S S
Sbjct: 121 HVEPKEGHVLHPLYANASAS 140

[Close]

BLAST of Csa2G023860 vs. TAIR10
Match: AT5G15220.1 (AT5G15220.1 Ribosomal protein L27 family protein)

HSP 1 Score: 228.0 bits (580), Expect = 3.8e-60
Identity = 107/151 (70.86%), Postives = 129/151 (85.43%), Query Frame = 1


Query: 2   LNIATTFCKRLNVKDLVTNVPVYS--SFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNP 61
           LN A + C+R+++++L+T VP YS  S SDG+++GL+L+F+RWATKKTAGSTKNGRDSNP
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 62  KYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRK 121
           K+LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK+K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPVY--ETTSTSLQLKTAA 149
           W+HV P  GHVLHP+Y     + S +LKTA+
Sbjct: 124 WIHVDPTGGHVLHPIYTKAAAAQSTKLKTAS 154

[Close]

BLAST of Csa2G023860 vs. TAIR10
Match: AT2G16930.2 (AT2G16930.2 Ribosomal protein L27 family protein)

HSP 1 Score: 223.0 bits (567), Expect = 1.2e-58
Identity = 105/151 (69.54%), Postives = 127/151 (84.11%), Query Frame = 1


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+ +RWATKKTAGSTKNGRDSNP
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRK 121
           K+LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK+K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPVY--ETTSTSLQLKTAA 149
           W+HV P  GHVLHP+Y     + S +L TA+
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of Csa2G023860 vs. TAIR10
Match: AT5G40950.1 (AT5G40950.1 ribosomal protein large subunit 27)

HSP 1 Score: 94.7 bits (234), Expect = 5.0e-20
Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 103 LKEGNVKFEKNKLSGRKWVHVIPKE 128
           L +G VKFEK     RK + V P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

[Close]

BLAST of Csa2G023860 vs. NCBI nr
Match: gi|449442805|ref|XP_004139171.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 9.0e-80
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
           YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 149
           VHVIPKEGHVLHPVYETTSTSLQLKTAA
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 148

[Close]

BLAST of Csa2G023860 vs. NCBI nr
Match: gi|567884869|ref|XP_006434993.1| (hypothetical protein CICLE_v10002763mg [Citrus clementina])

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 118/151 (78.15%), Postives = 131/151 (86.75%), Query Frame = 1


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           M N A T CKRLNVK+LV+NV VY S +DG+  GL+L+FRRWATKKTAGSTKNGRDS PK
Sbjct: 3   MFNFANTLCKRLNVKELVSNVSVYGSVADGSAGGLSLMFRRWATKKTAGSTKNGRDSKPK 62

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVG+GKDHTL+ALKEG VKFEK+KLSGRKW
Sbjct: 63  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKW 122

Query: 121 VHVIPKEGHVLHPVY---ETTSTSLQLKTAA 149
           VHV PKEGHVLHP+Y      ++S QL+TAA
Sbjct: 123 VHVEPKEGHVLHPLYANATANASSPQLETAA 153

[Close]

BLAST of Csa2G023860 vs. NCBI nr
Match: gi|590593351|ref|XP_007017541.1| (Ribosomal protein L27 family protein isoform 2, partial [Theobroma cacao])

HSP 1 Score: 242.3 bits (617), Expect = 5.5e-61
Identity = 116/147 (78.91%), Postives = 132/147 (89.80%), Query Frame = 1


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           M NIA TFCKR++VK+LVT+ PVY S +DG+++GL+L+F+RWATKKTAGSTKNGRDS PK
Sbjct: 34  MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 93

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEG VKFE  KLSGRKW
Sbjct: 94  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 153

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTA 148
           VHV PKEGHVLHPVY  T+ S +LKTA
Sbjct: 154 VHVEPKEGHVLHPVY-VTAASEELKTA 179

[Close]

BLAST of Csa2G023860 vs. NCBI nr
Match: gi|590593347|ref|XP_007017540.1| (Ribosomal protein L27 family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 242.3 bits (617), Expect = 5.5e-61
Identity = 116/147 (78.91%), Postives = 132/147 (89.80%), Query Frame = 1


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           M NIA TFCKR++VK+LVT+ PVY S +DG+++GL+L+F+RWATKKTAGSTKNGRDS PK
Sbjct: 1   MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEG VKFE  KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTA 148
           VHV PKEGHVLHPVY  T+ S +LKTA
Sbjct: 121 VHVEPKEGHVLHPVY-VTAASEELKTA 146

[Close]

BLAST of Csa2G023860 vs. NCBI nr
Match: gi|593696866|ref|XP_007148915.1| (hypothetical protein PHAVU_005G024900g [Phaseolus vulgaris])

HSP 1 Score: 238.8 bits (608), Expect = 6.1e-60
Identity = 112/140 (80.00%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 2   LNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPKY 61
           +N A +FC+RLN+K+LVTNVPVY S SD +  GL+++FRRWATKKTAGSTKNGRDS PK 
Sbjct: 1   MNFAASFCRRLNIKELVTNVPVYRSTSDVSGEGLSMVFRRWATKKTAGSTKNGRDSKPKN 60

Query: 62  LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKWV 121
           LGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTLFALKEG VKFEKNKL+GRKWV
Sbjct: 61  LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEGLVKFEKNKLTGRKWV 120

Query: 122 HVIPKEGHVLHPVYETTSTS 142
           HV PKEGHVLHP+Y   S S
Sbjct: 121 HVEPKEGHVLHPLYANASAS 140

The following BLAST results are available for this feature:

BLAST of Csa2G023860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL27_BART1	1.7e-25	71.08	50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)...	[more]
RL27_BARHE	6.3e-25	69.88	50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ...	[more]
RL27_ALTMD	1.1e-24	67.07	50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11...	[more]
RL27_AGRFC	1.4e-24	67.86	50S ribosomal protein L27 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=r...	[more]
RL27_SINMW	1.4e-24	67.86	50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) GN=rpmA PE=3 ...	[more]

BLAST of Csa2G023860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIQ3_CUCSA	6.3e-80	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G023860 PE=3 SV=1	[more]
V4SKH7_9ROSI	1.3e-61	78.15	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002763mg PE=3 SV=1	[more]
A0A061FDJ8_THECC	3.8e-61	78.91	Ribosomal protein L27 family protein isoform 1 OS=Theobroma cacao GN=TCM_034043 ...	[more]
A0A061FCK6_THECC	3.8e-61	78.91	Ribosomal protein L27 family protein isoform 2 (Fragment) OS=Theobroma cacao GN=...	[more]
V7BSH1_PHAVU	4.2e-60	80.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G024900g PE=3 SV=1	[more]

BLAST of Csa2G023860 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15220.1	3.8e-60	70.86	Ribosomal protein L27 family protein	[more]
AT2G16930.2	1.2e-58	69.54	Ribosomal protein L27 family protein	[more]
AT5G40950.1	5.0e-20	61.18	ribosomal protein large subunit 27	[more]

BLAST of Csa2G023860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442805\|ref\|XP_004139171.1\|	9.0e-80	100.00	PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Cucumis sativus]	[more]
gi\|567884869\|ref\|XP_006434993.1\|	1.9e-61	78.15	hypothetical protein CICLE_v10002763mg [Citrus clementina]	[more]
gi\|590593351\|ref\|XP_007017541.1\|	5.5e-61	78.91	Ribosomal protein L27 family protein isoform 2, partial [Theobroma cacao]	[more]
gi\|590593347\|ref\|XP_007017540.1\|	5.5e-61	78.91	Ribosomal protein L27 family protein isoform 1 [Theobroma cacao]	[more]
gi\|593696866\|ref\|XP_007148915.1\|	6.1e-60	80.00	hypothetical protein PHAVU_005G024900g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001684	Ribosomal_L27
IPR018261	Ribosomal_L27_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU101963	cucumber EST collection version 3.0	transcribed_cluster
CU114793	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G023860.1	Csa2G023860.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU114793	CU114793	transcribed_cluster
CU101963	CU101963	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	PRODOM	PD003114		coord: 69..125 score: 9.0
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 95..119 score: 1.0E-35coord: 45..69 score: 1.0E-35coord: 70..94 score: 1.0
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 42..126 score: 26
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 8..141 score: 5.6
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 43..123 score: 1.8
IPR001684	Ribosomal protein L27	TIGRFAMs	TIGR00062	TIGR00062	coord: 43..123 score: 6.1
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 75..89 scor
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 61..126 score: 5.0
None	No IPR available	PANTHER	PTHR15893:SF2	50S RIBOSOMAL PROTEIN L27	coord: 8..141 score: 5.6
None	No IPR available	unknown	SSF110324	Ribosomal L27 protein-like	coord: 43..123 score: 8.89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G023860	Cla019898	Watermelon (97103) v1	cuwmB147
Csa2G023860	MELO3C004251	Melon (DHL92) v3.5.1	cumeB139
Csa2G023860	ClCG02G015720	Watermelon (Charleston Gray)	cuwcgB122
Csa2G023860	Lsi11G005570	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G023860	MELO3C004251.2	Melon (DHL92) v3.6.1	cumedB132
Csa2G023860	Cla97C02G041450	Watermelon (97103) v2	cuwmbB118
Csa2G023860	BhiUN32G22	Wax gourd	cuwgoB217
Csa2G023860	CSPI02G04040	Wild cucumber (PI 183967)	cpicuB065
Csa2G023860	CsGy2G004140	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G023860	Silver-seed gourd	carcuB0735
Csa2G023860	Wax gourd	cuwgoB128
Csa2G023860	Cucumber (Gy14) v1	cgycuB096
Csa2G023860	Cucurbita maxima (Rimu)	cmacuB173
Csa2G023860	Cucurbita maxima (Rimu)	cmacuB787
Csa2G023860	Cucurbita maxima (Rimu)	cmacuB791
Csa2G023860	Cucurbita moschata (Rifu)	cmocuB157
Csa2G023860	Cucurbita moschata (Rifu)	cmocuB781
Csa2G023860	Cucurbita moschata (Rifu)	cmocuB783
Csa2G023860	Melon (DHL92) v3.5.1	cumeB144
Csa2G023860	Cucurbita pepo (Zucchini)	cpecuB820